genome.fa.s445.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  78  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14402632--14402670	8	4.9	8	93	0	69	89	7	0	2	0.56
14402621--14402672	18	3.0	18	86	11	81	88	7	0	3	0.62
14402621--14402670	16	3.0	16	91	5	73	88	8	0	4	0.64
14402622--14402678	26	2.2	26	87	0	78	87	5	1	5	0.72
14402623--14402670	24	2.0	24	91	4	78	89	6	0	4	0.58
14402821--14402936	5	22.0	5	72	18	67	21	4	1	72	1.11
14402826--14402935	6	18.3	6	72	13	66	20	4	1	72	1.11
14403510--14403557	20	2.5	19	79	3	51	39	25	18	16	1.91
14403892--14404038	5	27.8	5	66	22	61	17	4	4	72	1.19
14403890--14404016	22	5.5	22	72	18	73	17	3	4	74	1.15
14404055--14404506	59	7.7	57	85	7	475	43	7	13	35	1.73
14404054--14404506	60	7.7	57	86	6	507	43	7	13	35	1.73
14407428--14407511	3	28.0	3	95	0	150	33	1	0	65	1.00
14407538--14407571	16	2.1	16	88	0	50	70	8	11	8	1.34
14408560--14408598	19	2.1	18	85	4	51	20	7	0	71	1.10
14408623--14408658	3	12.0	3	93	0	63	66	0	2	30	1.06
14410845--14411006	37	4.4	36	87	4	139	32	20	11	35	1.89
14410883--14410945	18	3.4	18	70	12	65	28	22	12	36	1.91
14410901--14410964	19	3.4	19	68	12	60	34	18	14	32	1.91
14410881--14411006	37	3.4	37	93	1	216	31	19	12	35	1.90
14418209--14418591	105	3.7	102	78	5	358	35	13	16	34	1.88
14418217--14418655	105	4.2	105	78	6	351	35	13	15	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14418216--14418665	210	2.1	209	79	6	464	35	13	15	35	1.87
14419211--14419263	3	17.7	3	100	0	106	33	0	0	66	0.92
14419262--14419288	3	9.0	3	100	0	54	33	33	0	33	1.58
14420323--14420366	18	2.4	18	82	14	54	20	9	0	70	1.14
14420520--14420611	11	8.0	11	72	14	62	18	4	2	75	1.08
14420596--14420636	15	2.7	16	85	7	59	24	2	2	70	1.11
14421346--14421383	21	1.9	21	84	10	53	57	0	42	0	0.98
14421650--14421697	12	4.2	11	86	5	60	14	2	0	83	0.74
14421669--14421759	11	8.3	11	75	16	50	24	1	2	72	1.02
14421656--14421744	17	5.2	17	71	15	67	21	2	2	74	1.04
14421729--14421755	11	2.5	11	100	0	54	25	0	0	74	0.83
14421786--14422185	60	6.6	60	80	8	391	41	7	14	37	1.73
14421792--14422182	122	3.2	123	82	7	444	42	6	14	36	1.72
14430557--14430620	8	8.0	8	94	0	101	84	0	4	10	0.76
14431615--14431743	41	3.1	41	84	2	170	24	16	20	37	1.93
14431756--14431809	11	5.3	11	85	10	71	85	12	0	1	0.69
14431756--14431809	16	3.6	16	83	11	62	85	12	0	1	0.69
14431750--14431809	21	3.0	20	88	7	86	81	13	0	5	0.84
14431812--14431999	43	4.3	43	91	3	279	22	14	21	40	1.90
14432154--14432208	17	3.2	18	80	12	62	14	5	1	78	1.02
14432957--14433003	9	5.0	9	78	16	51	57	0	42	0	0.98
14432957--14433003	12	3.8	13	78	15	55	57	0	42	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14432962--14433005	21	2.0	22	95	4	81	54	0	45	0	0.99
14433286--14433363	4	17.8	4	78	16	59	21	1	2	74	1.01
14433388--14433844	61	7.5	60	83	9	552	42	5	13	37	1.68
14433379--14433902	120	4.3	119	85	8	634	43	5	13	37	1.67
14443625--14443658	10	3.3	10	87	4	50	29	0	0	70	0.87
14444285--14444322	2	19.0	2	94	0	67	50	2	0	47	1.15
14445597--14445628	13	2.4	14	94	5	57	81	6	0	12	0.87
14446118--14446222	55	1.9	54	82	5	131	56	8	11	23	1.62
14446871--14446906	2	18.0	2	94	0	63	47	2	0	50	1.15
14449748--14449794	22	2.1	22	84	0	58	59	4	14	21	1.52
14453859--14453904	22	2.1	21	84	4	56	45	2	2	50	1.26
14454741--14454791	22	2.1	26	86	13	74	50	0	0	49	1.00
14463580--14463620	3	13.7	3	100	0	82	65	0	0	34	0.93
14463621--14463662	3	14.0	3	100	0	84	33	0	0	66	0.92
14464568--14464611	21	2.0	22	86	4	63	15	2	11	70	1.26
14464638--14464683	3	15.7	3	78	13	51	30	0	2	67	1.03
14464636--14464685	25	2.0	26	92	4	84	28	0	4	68	1.08
14465619--14465661	3	14.3	3	95	0	77	37	0	0	62	0.95
14466171--14466209	19	2.1	19	85	0	51	20	2	5	71	1.17
14471905--14471969	31	2.1	31	88	0	94	36	10	6	46	1.64
14474194--14474236	22	2.2	20	84	16	54	74	2	18	4	1.10
14474194--14474237	20	2.1	21	84	12	56	75	2	18	4	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14474282--14474325	11	3.9	11	85	5	52	29	20	0	50	1.49
14474012--14474752	378	2.0	374	83	4	936	41	9	15	33	1.81
14475361--14475400	18	2.2	18	90	0	62	42	30	5	22	1.75
14475407--14475484	26	3.0	26	87	7	97	38	33	0	28	1.57
14475735--14475761	14	1.9	14	100	0	54	40	7	7	44	1.60
14476957--14477003	23	2.0	23	100	0	94	25	17	17	40	1.90
14477242--14477278	16	2.1	18	85	14	51	35	16	8	40	1.78
14477248--14477282	16	2.2	16	100	0	70	37	14	5	42	1.69
14485685--14485722	3	12.7	3	100	0	76	34	0	0	65	0.93
14486222--14487132	133	7.0	130	76	7	748	46	7	8	37	1.62
14492525--14492559	17	2.2	17	90	10	56	57	11	8	22	1.61
14501456--14501503	23	2.1	22	88	3	69	81	4	10	4	0.97
14507895--14507938	22	2.0	23	82	13	56	38	4	0	56	1.20
14510220--14510271	21	2.5	22	71	9	54	40	0	1	57	1.10
14519039--14519078	21	1.9	21	84	0	53	45	7	10	37	1.66
14524333--14524444	58	1.9	58	83	3	145	20	17	23	38	1.93
14530713--14530755	21	2.0	21	82	8	52	65	0	2	32	1.06
14532356--14532514	44	3.7	43	76	8	128	40	11	10	37	1.75
14532546--14532645	33	3.0	33	85	0	128	44	12	20	24	1.85
14532549--14532666	33	3.6	32	80	6	85	46	10	20	22	1.80
14532764--14532861	44	2.2	45	85	1	126	30	17	15	36	1.91
14532783--14532888	44	2.4	43	80	9	115	33	14	16	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14537679--14537724	10	4.7	10	81	5	58	65	0	0	34	0.93
14537681--14537724	20	2.2	20	92	4	72	68	0	0	31	0.90
14537733--14537769	15	2.4	16	78	13	51	29	5	0	64	1.15
14541090--14541138	2	24.5	2	100	0	98	0	51	0	48	1.00
14541322--14541369	25	1.9	25	83	8	62	54	0	2	43	1.12
14541312--14541371	21	2.5	25	76	12	65	60	0	1	38	1.07
14542601--14542695	46	2.1	46	91	0	154	29	5	17	47	1.70
14544808--14544846	18	2.2	18	85	0	51	41	12	15	30	1.85
14544914--14544975	31	2.0	31	90	0	97	20	4	35	38	1.74
14544931--14545003	12	5.9	12	67	17	51	13	1	38	46	1.52
14549470--14549511	19	2.2	19	95	0	75	35	7	14	42	1.73
14552028--14552102	11	6.4	11	77	17	71	65	10	1	22	1.31
14552034--14552108	25	3.0	25	76	13	82	61	13	1	24	1.40
14552025--14552102	14	6.5	12	78	17	74	65	10	1	23	1.31
14552016--14552108	47	1.9	47	87	8	134	65	10	1	22	1.30
14552063--14552191	24	5.3	24	79	7	127	57	12	4	25	1.54
14555810--14555837	11	2.5	11	100	0	56	17	28	28	25	1.98
14556954--14556992	15	2.8	13	85	14	51	79	0	2	17	0.84
14557324--14557369	22	2.1	22	84	8	58	45	13	8	32	1.73
14557445--14557540	18	5.3	18	71	5	86	45	8	18	27	1.78
14557446--14557546	36	2.8	36	77	8	116	48	6	17	26	1.73
14557450--14557587	72	1.9	72	79	5	154	47	9	13	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14557558--14557605	18	2.7	18	83	0	60	50	12	6	31	1.65
14557656--14557723	19	3.6	20	69	13	63	48	11	7	32	1.67
14557669--14557702	17	2.0	17	88	0	50	38	11	8	41	1.73
14557731--14557853	22	5.7	21	74	13	99	44	13	3	39	1.59
14557758--14557853	22	4.3	23	77	11	103	45	12	2	39	1.54
14557739--14557859	65	1.9	63	83	6	154	46	14	2	37	1.58
14557739--14557853	43	2.6	45	80	12	123	46	13	2	37	1.58
14557823--14558038	101	2.1	101	83	1	263	37	18	9	34	1.84
14559545--14559601	20	2.6	22	81	13	73	8	14	0	77	0.99
14559972--14560017	22	2.1	22	100	0	92	41	21	8	28	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147