genome.fa.s445.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  75  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13987146--13987198	22	2.4	22	74	0	52	50	3	11	33	1.56
13987342--13987405	22	2.9	23	77	13	71	46	4	12	35	1.62
13987355--13987433	30	2.5	31	78	13	83	46	6	8	37	1.60
13987562--13987610	22	2.2	22	88	0	71	44	8	10	36	1.68
13988246--13988318	22	3.4	21	81	9	67	57	4	9	28	1.49
13989889--13990145	67	3.9	67	80	6	249	25	10	8	56	1.60
13990811--13990854	4	11.0	4	80	0	52	22	2	20	54	1.56
13990813--13990854	16	2.6	16	92	0	66	23	2	19	54	1.55
13997205--13999722	631	4.0	631	98	0	4741	37	17	11	33	1.86
14001098--14001199	34	3.0	34	92	1	168	35	11	8	44	1.72
14002703--14002765	3	21.0	3	93	0	108	31	0	1	66	1.01
14003245--14003393	17	8.6	17	71	16	83	34	3	1	60	1.22
14003364--14003388	13	1.9	13	100	0	50	32	0	4	64	1.12
14006577--14007123	207	2.6	206	83	4	643	55	9	10	24	1.64
14007086--14007418	166	2.0	167	89	3	510	46	7	10	35	1.66
14007456--14007604	22	6.8	22	76	0	109	45	9	10	34	1.71
14007947--14008004	21	2.8	20	75	17	55	51	17	6	24	1.69
14017141--14017188	25	1.9	25	83	8	62	66	0	31	2	1.03
14022510--14022553	8	5.4	8	78	5	52	38	2	0	59	1.10
14024863--14024895	2	16.5	2	93	0	57	51	0	3	45	1.16
14026919--14027004	10	8.7	10	81	7	86	61	2	2	33	1.21
14026919--14027004	19	4.3	20	82	5	95	61	2	2	33	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14026929--14027022	10	9.1	11	77	15	69	60	1	3	35	1.20
14027015--14027073	10	5.8	10	72	4	55	37	5	0	57	1.21
14027020--14027087	20	3.4	21	82	15	90	41	4	1	52	1.30
14027159--14027313	10	16.4	9	73	17	59	36	1	5	56	1.33
14027165--14027535	9	38.2	9	66	17	97	37	2	5	54	1.38
14027387--14027475	11	8.7	10	72	17	58	43	1	5	49	1.33
14027488--14027531	20	2.2	20	84	4	54	27	4	4	63	1.33
14028397--14028426	15	1.9	16	93	6	53	40	3	6	50	1.45
14028393--14028429	16	2.4	17	82	17	53	45	2	5	45	1.40
14028446--14028507	13	4.8	13	78	7	72	29	4	8	58	1.48
14028460--14028501	14	3.2	13	90	6	59	26	2	7	64	1.32
14029351--14029438	25	3.4	23	70	22	68	42	0	0	57	0.98
14029401--14029440	14	3.1	14	72	20	50	32	0	0	67	0.91
14031212--14031270	26	2.4	25	81	13	68	57	0	3	38	1.15
14032550--14032606	15	3.7	16	83	6	64	21	0	26	52	1.47
14032637--14032693	22	2.6	22	75	10	62	15	0	26	57	1.38
14032644--14032691	15	3.1	15	79	5	51	16	0	22	60	1.36
14033099--14033209	36	3.1	37	75	3	109	41	18	23	16	1.90
14033189--14033227	18	2.2	18	95	0	69	43	15	17	23	1.87
14033206--14033287	36	2.3	36	84	0	101	45	12	17	25	1.83
14033568--14033616	22	2.2	23	85	3	64	42	14	18	24	1.87
14033678--14033720	22	2.0	22	85	0	59	34	18	16	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14033394--14033813	220	1.9	220	85	2	576	39	17	20	21	1.92
14033394--14033815	110	3.8	111	80	3	467	39	17	20	21	1.92
14034107--14034211	41	2.6	41	83	6	124	31	17	14	37	1.89
14034785--14034936	33	4.6	33	74	4	146	34	15	19	30	1.93
14034785--14034936	65	2.3	65	84	5	207	34	15	19	30	1.93
14034796--14035082	152	1.9	151	87	3	425	32	16	19	32	1.93
14034958--14035088	32	4.1	32	76	5	120	30	16	19	32	1.95
14034864--14035022	86	1.8	87	90	1	257	35	16	16	30	1.92
14034950--14035074	65	1.9	65	93	0	214	33	18	17	30	1.94
14035568--14035609	10	4.0	10	80	20	50	11	0	4	83	0.79
14035948--14035977	11	2.9	10	95	5	51	3	20	0	76	0.92
14035940--14035998	20	3.0	20	79	18	61	5	22	0	72	1.03
14037133--14037177	18	2.5	18	81	0	54	6	13	0	80	0.91
14042988--14043059	36	2.0	35	86	7	101	47	12	20	19	1.82
14043115--14043264	35	4.1	35	70	11	106	44	19	21	15	1.87
14043000--14043451	108	4.2	108	77	3	369	44	16	20	18	1.87
14043208--14043630	179	2.4	181	84	4	520	46	15	19	18	1.85
14043319--14043518	73	2.8	72	77	5	170	46	16	19	19	1.85
14043222--14043630	181	2.3	179	85	4	515	46	15	18	18	1.84
14043469--14043716	105	2.3	105	84	5	311	51	14	15	18	1.77
14043319--14043716	35	11.1	35	66	8	140	48	15	16	18	1.81
14044740--14044792	23	2.3	23	93	6	90	3	13	1	81	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14044725--14044793	29	2.3	29	87	7	93	4	10	2	82	0.91
14056166--14056230	15	4.2	16	75	16	75	16	1	30	50	1.55
14056573--14056620	23	2.1	23	84	0	60	29	2	2	66	1.14
14056724--14056775	18	2.8	19	75	21	56	71	5	0	23	1.07
14060575--14060628	22	2.5	21	79	8	63	11	0	27	61	1.30
14060567--14060642	38	2.0	38	87	7	111	14	0	28	56	1.39
14063311--14063355	15	2.9	15	86	3	54	33	4	2	60	1.29
14063514--14063565	20	2.6	21	80	17	58	26	5	3	63	1.34
14063512--14063953	211	2.1	217	82	6	544	30	9	7	52	1.61
14064446--14064496	22	2.4	22	80	12	61	37	5	1	54	1.36
14064461--14064510	21	2.4	22	80	10	59	46	8	0	46	1.32
14064693--14064744	20	2.5	21	84	9	70	30	3	11	53	1.54
14064669--14064743	21	3.6	20	77	12	71	32	4	9	54	1.51
14065146--14065191	17	2.7	18	80	12	53	30	10	0	58	1.32
14065472--14065557	43	2.0	43	88	4	129	30	17	9	43	1.80
14065634--14065693	21	2.8	22	69	19	54	36	10	5	48	1.59
14066303--14066345	22	2.0	22	81	9	52	25	4	6	62	1.40
14070665--14070703	18	2.2	18	95	0	69	30	12	0	56	1.37
14071439--14071569	63	2.0	66	83	4	169	46	7	10	35	1.67
14071450--14071664	44	5.0	44	74	10	153	47	7	10	33	1.66
14071472--14071664	66	3.0	66	77	3	176	47	7	9	34	1.66
14071472--14071629	22	7.2	22	76	6	115	47	8	10	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14071954--14072139	22	8.5	21	70	14	83	48	3	9	38	1.52
14071869--14072094	22	10.5	22	67	14	87	47	3	11	36	1.58
14072046--14072094	21	2.3	22	85	3	64	55	2	10	32	1.45
14072105--14072144	11	3.6	11	82	0	53	55	0	2	42	1.13
14072096--14072157	19	3.1	19	81	6	61	50	3	3	43	1.34
14072085--14072223	22	6.5	22	73	5	77	48	6	7	37	1.56
14072139--14072322	96	1.9	96	80	6	212	46	7	8	37	1.62
14072237--14072309	22	3.3	21	74	14	67	47	8	5	38	1.56
14072259--14072431	22	7.9	22	76	5	127	45	8	8	38	1.65
14072249--14072445	66	3.0	66	78	3	180	45	8	8	38	1.65
14072369--14072463	43	2.2	44	79	11	106	46	8	9	35	1.67
14072775--14072820	22	2.1	22	88	8	67	41	0	19	39	1.52
14072854--14072915	22	2.9	22	92	2	99	50	8	6	35	1.58
14072854--14072922	22	3.2	22	83	6	79	52	7	5	34	1.53
14073151--14073341	44	4.4	44	75	7	147	49	6	6	37	1.55
14073160--14073341	22	8.3	22	73	6	100	48	6	7	37	1.57
14073242--14073369	22	5.8	22	78	0	103	47	5	9	37	1.59
14073659--14073697	20	2.0	20	85	10	53	58	5	2	33	1.33
14077122--14077190	24	2.8	25	82	8	70	62	0	0	37	0.96
14077175--14077232	28	2.1	28	83	6	73	53	0	0	46	1.00
14077218--14077271	25	2.1	26	86	3	74	53	0	0	46	1.00
14084535--14084566	14	2.3	14	94	0	55	21	9	0	68	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14086581--14086617	3	12.3	3	100	0	74	32	0	0	67	0.91
14094511--14094584	20	3.7	20	73	8	69	18	25	24	31	1.98
14097006--14097045	21	1.9	21	94	0	71	42	10	2	45	1.51
14098850--14098876	3	9.0	3	100	0	54	66	0	0	33	0.92
14100693--14100731	12	3.5	11	83	16	53	74	12	0	12	1.08
14101141--14101297	52	3.0	52	85	0	215	25	22	8	42	1.83
14101322--14101361	11	3.6	11	82	0	53	52	30	0	17	1.45
14101322--14101364	22	2.0	22	95	0	77	48	30	0	20	1.50
14101626--14101689	25	2.6	25	77	5	76	23	32	7	35	1.84
14101700--14101784	31	2.7	31	92	0	143	25	27	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147