Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  87  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16005859--16005897
2
19.5
2
100
0
78
51
0
0
48
1.00
16006400--16006428
14
2.0
15
93
6
51
62
0
6
31
1.22
16013188--16013244
28
2.0
28
83
6
71
75
0
12
12
1.05
16013206--16013245
17
2.4
17
87
8
55
72
0
15
12
1.12
16014311--16014589
140
2.0
140
94
0
495
36
16
10
36
1.83
16017880--16017930
12
4.2
12
80
9
50
11
7
3
76
1.13
16017893--16017954
20
3.2
19
84
10
65
16
1
6
75
1.08
16017904--16017954
20
2.5
20
87
9
77
15
0
7
76
1.00
16017892--16017958
26
2.6
26
72
13
66
16
1
5
76
1.06
16018023--16018052
16
1.9
15
93
6
51
80
0
0
20
0.72
16018192--16018232
20
2.1
19
90
4
64
78
0
2
19
0.87
16030635--16030866
39
5.9
39
75
5
207
28
14
17
39
1.88
16030616--16030802
79
2.4
79
87
0
250
28
12
17
40
1.87
16031955--16032006
12
4.2
12
87
2
68
11
15
1
71
1.23
16032479--16032512
15
2.2
15
89
5
50
73
2
0
23
0.97
16032641--16032682
21
2.0
20
86
13
57
73
2
2
21
1.06
16036081--16036105
8
3.1
8
100
0
50
12
0
0
88
0.53
16036112--16036175
27
2.4
27
84
7
78
45
1
1
51
1.20
16037274--16037313
20
2.0
21
90
5
64
17
27
7
47
1.74
16042316--16042345
11
2.6
11
94
5
51
60
0
0
40
0.97
16043569--16043611
17
2.6
16
81
7
50
41
2
0
55
1.12
16043894--16043958
20
3.2
21
75
16
66
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16043897--16043965
21
3.4
19
73
11
66
31
0
0
68
0.90
16047679--16047755
38
2.0
38
94
0
136
33
31
9
25
1.87
16051745--16051835
38
2.4
39
90
5
150
15
2
61
20
1.44
16052070--16052107
20
2.0
20
89
5
60
34
0
5
60
1.19
16052333--16052381
25
1.9
26
91
4
82
46
2
10
40
1.49
16055779--16055845
6
11.2
6
88
0
98
22
0
49
28
1.50
16055785--16055843
12
4.9
12
97
0
109
22
0
50
27
1.49
16056188--16056312
18
6.9
18
68
17
80
32
33
4
28
1.78
16056212--16056313
33
3.0
34
78
8
109
35
30
4
29
1.79
16060947--16060972
4
6.5
4
100
0
52
50
0
0
50
1.00
16061440--16061469
11
2.7
11
89
0
51
33
0
6
60
1.23
16062130--16062168
19
2.2
17
86
9
51
76
0
2
20
0.90
16062320--16062359
3
13.0
3
89
5
62
65
0
2
32
1.06
16062587--16062697
50
2.2
52
82
6
129
39
6
14
39
1.71
16072136--16072705
58
9.7
58
78
10
568
36
12
5
44
1.68
16072136--16072706
118
4.8
118
88
4
757
36
12
5
44
1.68
16072557--16072588
16
2.1
15
94
5
55
46
9
0
43
1.35
16072557--16072604
16
3.1
14
85
11
51
45
6
2
45
1.40
16072721--16072851
9
14.2
9
72
17
65
70
3
3
22
1.17
16072721--16072861
13
9.9
14
70
17
62
70
2
3
22
1.15
16072726--16072794
19
3.5
19
80
9
68
78
0
5
15
0.94
16072720--16072775
5
11.8
5
75
22
50
78
0
3
17
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16073380--16073420
12
3.2
13
80
13
57
63
17
0
19
1.31
16073672--16073744
20
3.5
21
76
20
64
71
4
4
20
1.20
16073861--16073935
11
6.9
11
74
18
50
76
2
2
18
1.03
16073887--16073971
11
7.4
11
71
22
50
78
2
3
15
0.98
16073808--16073978
45
3.7
44
71
14
107
72
1
5
20
1.13
16074181--16074377
41
5.0
37
79
15
121
37
20
18
24
1.94
16074218--16074393
41
4.3
41
95
0
307
38
22
17
22
1.93
16074379--16074409
16
1.9
16
100
0
62
38
25
12
22
1.90
16074338--16074450
57
2.0
57
98
0
217
38
24
15
22
1.92
16085885--16085974
27
3.2
27
66
22
69
37
16
5
40
1.72
16085886--16086510
58
10.7
57
76
10
534
35
13
6
44
1.69
16085886--16086510
118
5.3
117
84
7
740
35
13
6
44
1.69
16086331--16086530
63
3.3
60
77
13
189
37
10
5
47
1.60
16086532--16086581
15
3.6
14
84
7
66
78
0
2
20
0.86
16086525--16086597
19
3.8
19
84
12
96
76
0
6
16
0.99
16086614--16086651
18
2.1
18
90
9
60
71
0
0
28
0.87
16087506--16087565
20
2.9
21
78
12
61
65
6
5
23
1.37
16087528--16087567
11
3.5
12
75
25
50
62
5
5
27
1.37
16087476--16087567
22
4.4
20
78
15
71
67
6
4
21
1.32
16087613--16087744
3
41.7
3
73
11
61
66
1
3
28
1.17
16087608--16087779
15
10.9
15
68
14
55
69
1
4
25
1.13
16087666--16087779
6
18.5
6
75
13
54
71
1
2
23
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16087751--16087787
18
2.0
19
89
5
58
83
0
2
13
0.74
16090699--16090778
41
2.0
40
82
7
99
26
11
21
41
1.86
16090880--16090942
33
1.9
32
83
3
81
28
14
14
42
1.84
16090876--16091084
79
2.7
76
82
7
212
30
13
16
39
1.87
16090946--16091187
39
6.1
39
75
3
180
28
12
17
40
1.87
16090920--16091084
39
4.2
39
77
3
152
29
15
16
38
1.89
16090917--16091084
79
2.1
79
86
1
248
29
14
16
39
1.88
16092300--16092358
6
10.8
5
81
18
57
16
3
3
76
1.06
16092323--16092351
14
2.0
15
93
6
51
20
0
3
75
0.94
16092316--16092357
20
2.0
21
86
13
61
19
0
4
76
0.96
16092337--16092410
39
1.9
37
81
10
87
35
2
2
59
1.26
16092419--16092455
11
3.2
12
88
11
51
86
0
0
13
0.57
16092419--16092455
17
2.1
18
95
5
67
86
0
0
13
0.57
16096388--16096414
13
2.1
13
100
0
54
7
7
0
85
0.75
16097901--16098464
59
9.4
59
79
12
555
36
12
7
44
1.70
16097899--16098464
182
3.1
177
84
7
698
36
12
7
44
1.70
16098494--16098546
19
2.7
19
82
8
63
77
1
7
13
1.06
16099596--16099710
8
13.8
8
69
24
62
79
1
1
17
0.91
16099600--16099710
6
18.7
6
75
14
97
79
1
1
17
0.91
16099600--16099704
42
2.5
40
82
11
122
79
1
1
17
0.92
16099611--16099710
21
4.7
21
69
25
59
79
2
1
18
0.89
16099907--16100162
42
6.1
42
88
1
336
37
23
15
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16101163--16101231
25
2.9
23
85
12
77
11
11
0
76
1.01
16101176--16101235
17
3.6
17
79
18
72
11
10
0
78
0.97
16101178--16101231
8
6.8
8
95
4
92
11
9
0
79
0.93
16104782--16104832
21
2.5
21
90
3
86
49
0
1
49
1.12
16108524--16108615
27
3.3
27
66
26
73
36
15
6
41
1.73
16108525--16108979
59
7.7
58
83
8
553
34
12
8
44
1.74
16108991--16109029
20
1.9
21
89
5
62
74
2
7
15
1.15
16109000--16109085
17
5.5
16
71
18
56
75
1
6
16
1.07
16109000--16109071
11
6.4
11
75
22
51
77
1
6
13
1.03
16109000--16109081
27
3.1
26
69
24
64
75
1
7
15
1.08
16110124--16110207
6
13.5
6
71
16
55
75
0
2
22
0.92
16110122--16110198
21
3.7
21
73
16
70
72
0
2
24
0.97
16110122--16110204
13
6.1
13
75
17
71
73
0
2
24
0.95
16110121--16110208
38
2.2
42
86
8
121
73
0
2
23
0.94
16110157--16110220
32
2.0
32
82
8
78
78
0
6
15
0.95
16115037--16115159
18
6.8
18
66
17
76
29
4
33
33
1.76
16115506--16115548
12
3.6
12
87
0
50
25
46
2
25
1.65
16115506--16115555
18
2.8
18
84
0
64
26
44
2
28
1.65
16118965--16119013
25
1.9
26
91
4
82
40
10
2
46
1.49
16119239--16119276
20
2.0
20
89
5
60
60
5
0
34
1.19
16119531--16119622
38
2.4
39
90
5
143
22
64
0
13
1.28
16119560--16119641
19
4.3
19
75
12
78
23
64
0
12
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16120179--16120270
46
2.0
46
97
0
175
46
15
20
17
1.84
16123761--16123884
62
2.0
63
87
1
178
37
15
16
30
1.90
16123884--16124912
161
6.4
161
79
5
1037
33
10
14
41
1.80
16123884--16124905
324
3.2
320
84
3
1270
33
10
14
41
1.80
16123884--16124911
485
2.1
478
82
4
1217
33
10
14
41
1.80
16125506--16125570
21
3.0
22
82
8
64
49
9
20
21
1.76
16128275--16128306
2
16.0
2
100
0
64
0
50
0
50
1.00
16141844--16141868
13
1.9
13
100
0
50
80
0
0
20
0.72
16141843--16141879
7
5.1
7
87
6
56
81
0
0
18
0.70
16141843--16141885
15
2.9
14
83
10
59
79
0
2
18
0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147