genome.fa.s445.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  108  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19617759--19618409	362	1.8	358	78	6	740	40	8	8	42	1.66
19618483--19620364	181	10.4	176	76	8	1308	41	9	8	40	1.67
19618483--19620386	362	5.3	356	76	8	1562	41	9	8	40	1.67
19620570--19620979	180	2.3	181	78	4	409	40	9	9	41	1.70
19620406--19621779	179	7.7	180	76	7	926	41	8	8	41	1.66
19620388--19625824	181	30.2	179	70	12	1978	42	9	8	40	1.68
19621630--19621935	164	1.9	164	84	5	422	40	10	7	41	1.67
19622404--19623061	182	3.6	180	75	8	406	44	10	7	37	1.68
19624210--19624242	17	2.0	17	88	5	50	39	12	0	48	1.40
19623732--19625824	358	5.9	351	73	11	1299	42	10	7	39	1.68
19625888--19625920	17	1.9	18	88	11	52	63	3	0	33	1.10
19625837--19628750	180	16.1	177	70	12	926	42	10	7	39	1.67
19626754--19626849	46	2.1	46	90	0	147	41	5	14	38	1.68
19626871--19628751	180	10.5	181	75	8	1432	41	10	7	40	1.67
19627920--19627968	18	2.8	18	81	15	66	38	10	4	46	1.57
19628758--19629381	177	3.5	176	77	9	561	41	7	9	42	1.64
19629621--19630052	179	2.4	178	82	2	497	38	8	10	42	1.70
19630442--19630507	20	3.5	20	77	6	59	50	7	4	37	1.52
19631661--19631702	14	3.0	14	78	21	52	30	4	7	57	1.47
19631791--19631836	19	2.4	19	88	3	65	54	4	0	41	1.20
19631805--19631866	25	2.5	26	78	17	62	51	3	3	41	1.34
19632350--19632402	26	2.1	25	86	10	72	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19632675--19632762	44	2.0	44	82	10	108	50	2	3	44	1.31
19633073--19633124	22	2.4	20	76	17	50	40	1	3	53	1.30
19633112--19633141	12	2.5	12	88	0	51	40	0	0	60	0.97
19633253--19633325	13	5.6	13	74	18	53	38	2	1	57	1.22
19633250--19633357	28	3.8	28	78	14	87	42	1	1	53	1.22
19633270--19633397	15	8.8	15	72	21	87	46	1	1	50	1.20
19633362--19633416	20	2.8	20	76	15	62	52	0	0	47	1.00
19633267--19633414	28	5.3	29	72	21	86	47	1	1	49	1.18
19633628--19633670	4	11.0	4	80	14	54	48	0	0	51	1.00
19633632--19633677	19	2.4	19	89	7	67	45	0	0	54	0.99
19634064--19634108	15	3.1	14	83	6	54	51	0	0	48	1.00
19634086--19634136	24	2.1	25	82	10	61	50	0	1	47	1.12
19634092--19634136	24	2.0	24	86	8	67	51	0	2	46	1.13
19634058--19634121	29	2.3	27	78	10	67	51	0	0	48	1.00
19634973--19635011	19	2.1	18	86	13	53	41	5	0	53	1.23
19635100--19635151	27	2.0	26	85	11	70	44	0	1	53	1.11
19635423--19635481	18	3.4	18	71	26	56	35	1	0	62	1.05
19636688--19636756	26	2.4	29	79	11	72	49	0	0	50	1.00
19636732--19636775	16	2.8	16	83	13	56	52	0	2	45	1.13
19636895--19636941	22	2.1	23	92	4	78	53	2	4	40	1.32
19636913--19636977	31	2.1	30	88	2	94	56	1	1	40	1.18
19636937--19637043	27	4.1	25	75	16	85	49	1	1	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19642340--19649622	181	40.3	181	71	10	2622	40	8	10	41	1.68
19642335--19650161	363	21.7	360	72	11	3686	40	8	10	41	1.68
19642340--19643648	175	7.3	180	75	9	841	40	7	10	41	1.67
19643656--19650161	181	35.9	180	72	10	3172	39	8	10	41	1.68
19646028--19646340	169	1.9	169	85	4	434	41	5	9	43	1.60
19648759--19648810	23	2.2	24	76	10	63	42	1	0	55	1.10
19650273--19650736	180	2.6	176	80	7	392	38	9	9	42	1.70
19650168--19651338	177	6.6	178	77	9	894	40	8	9	41	1.69
19650168--19651338	357	3.3	355	77	8	1032	40	8	9	41	1.69
19651176--19651479	146	2.1	146	84	5	391	39	7	9	43	1.66
19651031--19651661	327	2.0	320	81	4	755	39	8	9	41	1.69
19651323--19652248	181	5.1	179	76	5	693	40	9	10	40	1.71
19651748--19652220	177	2.6	178	77	7	404	42	8	10	37	1.71
19650503--19652189	869	2.0	859	79	6	1829	40	8	10	40	1.69
19652251--19652577	160	2.0	159	81	7	374	41	9	7	41	1.65
19652420--19663423	181	61.3	180	74	9	6563	39	8	9	41	1.69
19652409--19663423	541	20.5	533	74	9	5116	39	8	9	41	1.69
19655725--19663404	540	14.2	541	74	9	4570	39	8	10	41	1.69
19661878--19663392	177	8.4	174	73	12	430	39	7	9	42	1.66
19661480--19662733	530	2.4	523	79	8	1202	41	7	8	42	1.65
19663620--19664241	181	3.4	183	77	5	555	38	9	9	43	1.69
19664336--19665327	180	5.5	179	76	8	678	41	8	8	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19664619--19665290	359	1.9	360	78	5	741	42	9	7	40	1.66
19664320--19665390	181	5.9	181	77	7	874	40	8	8	41	1.67
19665390--19667458	181	11.5	179	75	7	1417	40	8	9	41	1.66
19665421--19667455	542	3.8	539	76	6	1433	40	8	8	41	1.66
19667472--19670338	181	16.2	177	73	11	1591	40	8	10	41	1.69
19667472--19668800	182	7.4	176	77	7	987	38	8	10	42	1.69
19668799--19672621	180	21.1	179	69	14	1215	40	8	10	41	1.69
19669923--19670229	166	1.8	168	83	4	415	40	6	11	42	1.67
19671892--19672632	362	2.0	361	79	4	769	39	8	9	41	1.68
19672553--19672719	87	1.9	87	88	2	255	40	7	5	46	1.54
19673131--19673181	18	2.9	18	77	19	54	43	3	11	41	1.60
19672655--19673981	181	7.4	180	73	10	755	40	8	9	41	1.66
19674170--19675599	180	7.9	180	78	6	1230	40	7	10	41	1.68
19674323--19675602	542	2.4	541	78	5	1257	40	7	10	41	1.68
19674170--19675960	361	5.0	359	74	10	1239	39	7	10	41	1.69
19675431--19675760	161	2.0	162	81	4	389	40	7	9	42	1.65
19676418--19677085	180	3.7	182	74	7	497	39	8	10	41	1.72
19676800--19677408	322	1.9	321	81	4	735	41	7	10	40	1.68
19677096--19678274	181	6.7	179	74	11	512	41	8	9	40	1.67
19677772--19679676	181	10.7	179	74	10	1345	40	8	9	42	1.66
19678867--19679181	168	1.9	168	84	4	429	41	6	8	43	1.62
19679467--19679508	21	1.9	23	85	9	61	52	11	7	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19679687--19683093	180	19.0	181	75	7	2290	40	8	9	41	1.67
19679740--19693137	181	72.9	181	67	14	2811	40	8	9	41	1.69
19679723--19685842	542	11.5	538	72	11	3041	40	8	9	41	1.68
19681241--19681563	176	1.8	178	82	6	422	43	8	7	40	1.63
19681725--19681754	14	2.1	14	93	0	51	36	0	0	63	0.95
19681689--19683110	179	7.9	179	74	8	403	40	7	9	42	1.66
19683995--19685850	361	5.2	360	76	6	1439	40	8	9	41	1.69
19685699--19685973	135	2.0	135	82	3	331	38	7	8	45	1.63
19685336--19686346	497	2.0	493	81	6	1177	39	8	9	43	1.67
19686439--19688482	180	11.4	175	75	8	1311	40	9	9	40	1.70
19686711--19688475	537	3.3	533	78	7	1563	40	8	10	40	1.70
19688376--19688608	120	1.9	121	84	4	310	47	8	12	32	1.71
19689891--19690416	170	3.0	168	78	7	491	39	9	11	39	1.74
19691681--19691752	36	2.0	37	91	2	119	43	4	2	50	1.36
19689600--19693117	361	9.7	362	69	13	1414	40	8	10	40	1.70
19693019--19693250	120	1.9	121	85	2	324	46	8	12	32	1.72
19693793--19696315	181	14.0	178	72	12	1273	41	9	8	40	1.68
19693803--19695080	537	2.4	531	80	8	1432	41	10	7	40	1.67
19693793--19695784	180	11.2	179	74	9	1279	42	10	7	40	1.67
19693793--19696250	356	6.8	355	73	11	1398	41	9	7	40	1.68
19695699--19695736	18	2.1	19	85	5	51	44	10	2	42	1.52
19695759--19695814	25	2.2	25	93	0	94	26	7	16	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19696327--19697271	333	2.8	331	86	2	1326	25	19	25	28	1.99
19698749--19699318	177	3.2	177	77	8	469	42	7	8	41	1.63
19699205--19699454	133	1.9	133	84	2	342	40	7	8	44	1.61
19699338--19700236	182	5.0	179	75	8	699	40	8	10	41	1.68
19699334--19700068	362	2.0	360	80	6	826	40	7	10	41	1.67
19700112--19700384	138	2.0	134	80	4	305	41	6	8	43	1.59
19700246--19702511	361	6.4	355	75	10	1532	40	7	9	41	1.67
19701006--19702541	180	8.5	180	78	7	1329	41	7	9	41	1.67
19701006--19702541	541	2.8	539	81	6	1670	41	7	9	41	1.67
19702501--19702617	35	3.2	35	63	21	85	45	9	11	33	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147