genome.fa.s445.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  96  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17620150--17620191	15	2.6	16	88	7	59	19	2	0	78	0.86
17624369--17624412	18	2.4	18	78	17	54	59	0	0	40	0.98
17624627--17624655	14	2.1	14	100	0	58	48	6	6	37	1.57
17626165--17626206	3	14.0	3	100	0	84	66	0	0	33	0.92
17636865--17636900	15	2.3	16	90	4	56	86	5	2	5	0.79
17637665--17637967	49	6.1	49	79	8	285	34	13	15	35	1.87
17640759--17640879	33	3.7	32	77	11	120	29	19	16	33	1.94
17640887--17641147	68	3.7	69	78	6	233	27	14	18	39	1.90
17640948--17641144	104	1.9	104	83	4	254	26	14	19	40	1.89
17640949--17641144	34	5.7	34	80	5	189	26	14	19	40	1.89
17641287--17641357	36	2.0	36	88	0	106	30	11	15	42	1.82
17641000--17641611	273	2.3	269	82	3	683	30	13	17	38	1.88
17641521--17641624	36	3.0	34	75	5	109	29	10	18	41	1.84
17641553--17641633	36	2.2	36	86	0	108	30	8	17	43	1.79
17642634--17642659	10	2.6	10	100	0	52	26	0	15	57	1.38
17643086--17643121	14	2.4	16	90	9	58	30	0	0	69	0.89
17643683--17643717	7	4.9	7	93	6	61	74	0	0	25	0.82
17643687--17643724	18	2.1	18	85	9	51	73	2	0	23	0.95
17644041--17644072	3	10.7	3	100	0	64	65	0	0	34	0.93
17647379--17647428	13	3.8	13	79	10	57	64	0	0	36	0.94
17647374--17647426	26	2.0	26	92	0	88	62	0	0	37	0.96
17652646--17652671	13	2.0	13	100	0	52	61	15	0	23	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17656267--17656300	3	11.3	3	93	0	59	64	0	2	32	1.08
17657345--17657427	30	2.8	30	79	3	87	38	8	1	51	1.40
17657806--17657850	20	2.2	20	80	7	56	46	4	28	20	1.69
17658198--17658244	6	7.5	6	86	13	60	19	0	0	80	0.70
17663556--17663613	22	2.5	22	81	10	62	3	27	1	67	1.17
17663926--17664331	144	2.8	144	79	5	455	40	10	13	34	1.80
17667488--17667617	44	2.9	44	80	3	136	41	17	10	30	1.84
17667592--17667658	34	2.0	34	91	5	109	38	17	8	34	1.82
17667744--17667784	21	2.0	21	95	0	73	46	19	4	29	1.71
17667853--17667907	23	2.5	23	80	11	62	41	18	7	32	1.78
17667868--17667935	23	3.0	23	82	0	73	44	13	8	33	1.74
17667895--17667952	23	2.5	23	85	0	80	43	10	10	36	1.73
17669358--17669397	21	1.9	21	90	10	64	12	10	0	77	0.99
17669371--17669419	19	2.6	20	78	12	59	14	12	0	73	1.10
17669380--17669427	17	2.8	17	76	17	55	14	12	0	72	1.11
17676321--17676347	13	2.1	13	100	0	54	37	22	14	25	1.93
17678765--17678793	2	14.5	2	100	0	58	51	48	0	0	1.00
17686065--17686130	3	22.0	3	100	0	132	66	0	0	33	0.92
17686455--17686489	14	2.4	15	90	4	54	80	2	2	14	0.95
17686766--17687079	174	1.8	174	81	4	400	43	4	8	43	1.54
17688639--17688704	33	2.1	32	88	11	100	57	3	7	31	1.42
17691304--17691507	82	2.5	82	88	1	302	43	8	9	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17695105--17695214	30	3.7	30	75	15	86	63	17	0	18	1.36
17695600--17695632	17	1.9	17	93	0	57	39	0	9	51	1.34
17696170--17696221	26	2.0	27	96	3	97	42	1	7	48	1.43
17699445--17699478	16	2.2	16	94	5	61	0	2	11	85	0.71
17706206--17707225	509	2.0	507	90	1	1623	33	19	10	36	1.86
17724479--17724519	16	2.8	14	82	13	55	0	2	9	87	0.62
17730636--17730669	13	2.6	13	95	0	59	52	14	0	32	1.42
17731833--17731892	30	2.0	30	96	0	111	38	6	11	43	1.68
17732288--17732326	18	2.2	18	86	9	53	58	2	5	33	1.33
17732334--17732404	18	4.1	18	78	10	67	35	15	19	29	1.93
17732356--17732410	17	3.2	17	73	14	51	30	14	18	36	1.91
17732351--17732462	34	3.2	33	77	7	107	30	13	20	35	1.91
17732449--17732523	34	2.2	35	79	15	86	33	16	17	33	1.92
17732566--17732603	18	2.1	18	90	0	58	42	15	5	36	1.70
17732609--17732642	16	2.1	17	88	5	52	41	11	14	32	1.82
17732903--17732935	17	1.9	17	93	0	57	30	6	21	42	1.77
17732993--17733035	18	2.5	17	77	7	50	44	6	11	37	1.68
17732856--17733264	202	2.0	201	96	0	746	39	10	14	35	1.80
17733195--17733237	18	2.5	17	77	7	50	44	6	11	37	1.68
17733315--17733710	45	8.8	46	74	11	252	42	15	6	35	1.72
17733347--17733530	22	8.2	22	63	15	65	45	15	6	32	1.71
17733377--17733714	180	1.9	179	83	4	439	41	15	5	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17733628--17733709	22	3.6	22	67	6	65	39	19	6	35	1.77
17736012--17736040	14	2.0	15	93	6	51	62	13	0	24	1.32
17736302--17736342	20	2.1	19	86	4	55	58	17	4	19	1.56
17737846--17737886	20	2.0	21	85	4	57	51	12	2	34	1.52
17737883--17737935	23	2.3	24	78	15	58	60	3	5	30	1.37
17739440--17739492	18	2.8	19	83	11	65	66	11	5	16	1.42
17739434--17739499	18	3.6	18	73	8	53	65	10	4	19	1.41
17740802--17740881	42	1.9	42	89	5	126	22	5	26	46	1.72
17742110--17742177	21	3.3	21	69	29	56	17	27	7	47	1.74
17747970--17748038	23	3.1	22	77	8	77	69	0	2	27	1.02
17747999--17748110	6	17.3	7	79	12	59	66	0	2	31	1.06
17747970--17748038	22	3.1	23	77	8	63	69	0	2	27	1.02
17748047--17748113	3	22.3	3	100	0	134	67	0	0	32	0.91
17748797--17748839	19	2.3	19	84	11	54	76	0	2	20	0.89
17748999--17749049	23	2.3	22	82	3	57	31	37	15	15	1.89
17750414--17750483	36	1.9	37	85	8	99	52	28	2	15	1.57
17750421--17750467	15	3.1	15	82	14	53	53	27	4	14	1.60
17757987--17758138	70	2.2	70	96	0	277	51	9	21	16	1.73
17761367--17761413	18	2.5	19	86	10	62	85	0	6	8	0.75
17761368--17761415	10	4.9	10	76	5	53	85	0	8	6	0.74
17762475--17762552	36	2.2	35	83	2	102	19	29	11	39	1.87
17762968--17762992	10	2.5	10	100	0	50	84	8	0	8	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17764963--17764993	15	2.1	15	93	0	53	54	22	0	22	1.44
17770487--17770538	24	2.1	25	86	10	72	13	1	32	51	1.52
17780883--17780945	27	2.3	27	91	0	99	20	3	41	34	1.68
17785024--17785076	5	10.8	5	81	4	63	79	3	1	15	0.96
17785024--17785077	19	2.7	21	80	13	69	79	3	1	14	0.95
17785021--17785078	24	2.4	24	85	0	71	81	3	1	13	0.91
17785021--17785092	29	2.4	30	90	4	110	77	5	4	12	1.08
17785021--17785103	29	2.9	27	81	16	87	78	4	4	12	1.07
17811056--17811130	25	3.0	24	75	15	62	10	2	38	48	1.52
17811108--17811548	20	22.2	20	76	9	334	15	3	36	44	1.62
17811204--17811316	26	4.0	26	70	18	82	13	1	38	46	1.53
17811202--17811298	8	14.3	7	70	24	50	13	2	38	46	1.55
17813023--17813460	144	3.0	143	79	4	418	40	12	12	34	1.82
17813023--17813599	143	4.0	144	78	4	445	40	12	12	35	1.81
17813102--17813599	144	3.5	140	79	6	446	39	12	13	35	1.81
17820114--17820141	1	28.0	1	100	0	56	0	0	100	0	0.00
17820653--17820736	39	2.2	39	91	0	132	52	7	14	26	1.67
17827018--17827089	17	4.6	17	74	23	77	13	2	37	45	1.59
17827021--17827075	29	1.9	28	88	3	83	14	1	36	47	1.55
17827085--17827149	23	2.9	23	78	14	73	10	1	40	47	1.48
17827169--17827235	20	3.3	20	87	0	89	16	2	38	41	1.64
17828347--17828381	16	2.1	17	94	5	63	57	5	11	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17828990--17829055	3	21.7	3	76	14	64	65	0	3	31	1.08
17829376--17829440	28	2.3	28	91	0	103	49	24	4	21	1.68
17829322--17829460	68	2.0	67	80	5	154	49	21	5	23	1.69
17829366--17829468	14	7.5	14	68	4	66	50	21	3	24	1.65
17829715--17829763	3	16.7	3	76	19	50	69	0	0	30	0.89
17829713--17829759	20	2.2	20	85	11	58	68	0	0	31	0.90
17837444--17837552	3	36.3	3	88	0	119	33	39	0	25	1.62
17837551--17837587	3	12.3	3	100	0	74	32	0	0	67	0.91
17846779--17846807	13	2.2	13	100	0	58	37	0	37	24	1.56
17848766--17849211	35	12.5	35	68	13	142	16	16	15	51	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147