genome.fa.s445.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  46  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9271127--9271213	6	14.3	6	72	11	52	39	0	4	56	1.20
9271127--9271213	37	2.4	35	77	11	95	39	0	4	56	1.20
9274335--9274371	6	6.2	6	93	0	56	29	0	21	48	1.50
9276199--9276298	49	2.0	49	92	0	164	46	4	15	35	1.64
9277914--9279550	592	2.8	584	82	9	1891	35	16	10	38	1.83
9279972--9280009	20	1.9	20	94	0	67	36	5	5	52	1.47
9285119--9285154	17	2.1	17	90	10	56	55	0	0	44	0.99
9286038--9286109	31	2.2	31	80	7	81	48	0	0	51	1.00
9286026--9286095	37	1.9	36	85	8	97	45	0	0	54	0.99
9286062--9286117	20	2.8	20	81	10	62	48	0	1	50	1.11
9286027--9286104	37	2.1	36	81	6	86	48	0	0	51	1.00
9293854--9293884	12	2.6	12	89	0	53	29	0	0	70	0.87
9294322--9294369	25	1.9	25	95	0	87	47	0	10	41	1.37
9297787--9297858	6	12.0	6	93	0	108	22	0	50	27	1.50
9297787--9297858	30	2.4	30	100	0	144	22	0	50	27	1.50
9298201--9298288	18	5.1	18	76	8	83	34	29	4	31	1.78
9300789--9300833	14	3.3	14	82	11	58	55	0	2	42	1.12
9301332--9301395	24	2.7	22	72	15	56	59	1	3	35	1.23
9301374--9301404	15	2.1	15	94	5	55	54	0	0	45	0.99
9304566--9304622	28	2.0	28	93	0	96	52	8	17	21	1.71
9314768--9314841	27	3.2	21	75	23	62	35	2	0	62	1.10
9315324--9315382	26	2.2	27	81	3	66	52	10	8	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9317959--9318040	39	2.1	38	82	8	103	45	1	0	53	1.08
9317973--9318075	32	3.0	32	74	9	80	47	2	1	47	1.28
9318126--9318186	24	2.6	23	79	7	68	31	8	3	57	1.44
9318146--9318186	11	3.4	12	83	12	57	29	7	4	58	1.46
9324141--9324179	21	1.9	20	89	5	60	20	5	20	53	1.64
9324548--9324579	2	16.0	2	100	0	64	50	0	0	50	1.00
9336327--9336366	12	3.3	12	85	0	53	80	7	5	7	1.03
9336936--9336961	11	2.4	11	100	0	52	26	0	0	73	0.84
9344430--9344468	19	2.1	18	85	4	51	51	0	0	48	1.00
9345437--9345484	7	7.3	7	77	17	50	70	0	2	27	0.98
9345436--9345484	13	3.8	13	78	10	64	71	0	2	26	0.97
9345434--9345493	26	2.4	24	86	10	93	70	0	1	28	0.97
9350942--9350983	20	2.1	20	86	8	59	9	4	4	80	0.99
9351535--9351567	13	2.7	12	90	9	57	45	9	0	45	1.35
9351455--9351764	163	1.9	163	90	1	496	40	6	4	48	1.48
9352017--9352060	2	22.0	2	92	0	70	52	2	0	45	1.13
9353338--9353401	22	2.9	22	84	11	78	57	0	0	42	0.98
9353338--9353438	53	1.9	53	84	11	136	54	0	0	44	1.06
9353426--9353460	15	2.3	15	85	0	52	28	0	2	68	1.04
9353456--9353503	24	2.0	24	87	0	69	56	0	0	43	0.99
9353780--9353840	27	2.3	27	85	0	77	49	1	8	40	1.42
9354395--9354440	23	2.0	23	95	0	83	26	4	10	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9359038--9359097	14	4.6	13	74	17	54	48	0	1	50	1.11
9359038--9359095	25	2.2	27	82	11	68	48	0	1	50	1.11
9359123--9359152	11	2.7	11	89	0	51	53	0	0	46	1.00
9359123--9359181	22	2.9	21	74	25	63	49	0	1	49	1.11
9359136--9359213	29	2.5	32	84	14	101	50	1	1	47	1.17
9360024--9360072	13	3.8	13	75	0	53	67	4	2	26	1.19
9360019--9360080	26	2.4	26	86	2	90	66	3	1	29	1.17
9360347--9360405	28	2.1	28	87	6	84	30	3	8	57	1.45
9365565--9365608	22	2.0	22	82	8	54	18	0	9	72	1.10
9371585--9371654	27	2.6	27	86	4	97	40	22	5	31	1.78
9377736--9377777	22	1.9	22	85	0	57	33	7	9	50	1.62
9379968--9380124	52	3.0	52	85	3	201	40	7	24	27	1.82
9381668--9381725	29	2.0	29	100	0	116	34	17	6	41	1.76
9381794--9381848	28	2.0	28	82	13	69	49	3	1	45	1.30
9382715--9382762	7	7.3	7	73	21	50	68	0	2	29	1.01
9382714--9382762	13	3.8	13	83	0	71	69	0	2	28	1.00
9382715--9382765	26	2.0	26	100	0	102	66	0	1	31	1.03
9383041--9383087	14	3.4	14	78	0	58	34	4	6	55	1.45
9385090--9385142	20	2.6	19	77	13	54	32	1	5	60	1.31
9385116--9385150	14	2.5	14	82	17	54	37	0	5	57	1.23
9385574--9385629	20	2.8	20	81	8	60	19	5	26	48	1.70
9385592--9385629	20	1.9	20	94	0	67	21	5	21	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9385600--9385643	20	2.2	20	83	0	52	27	2	20	50	1.60
9386129--9386177	25	2.0	25	84	8	64	48	4	6	40	1.47
9390493--9390521	15	1.9	15	100	0	58	89	0	10	0	0.48
9391875--9392005	3	44.3	3	69	19	62	35	3	4	56	1.38
9391869--9391917	24	2.0	24	92	0	80	32	4	2	61	1.26
9391952--9392045	5	19.2	5	71	20	65	32	3	3	60	1.28
9391955--9392003	7	7.1	7	80	15	50	34	2	2	61	1.19
9392080--9392120	3	13.7	3	84	0	55	34	26	2	36	1.70
9392901--9392990	6	15.8	5	82	14	72	21	3	3	72	1.14
9392900--9392997	10	8.9	11	77	8	67	21	3	3	72	1.12
9393087--9393111	13	1.9	13	100	0	50	88	0	0	12	0.53
9397582--9397896	163	1.9	163	88	0	468	39	8	6	45	1.61
9399186--9399268	21	3.7	24	72	22	72	48	0	2	49	1.14
9405475--9405510	16	2.2	16	95	0	63	47	2	0	50	1.15
9405630--9405656	14	1.9	14	100	0	54	48	0	0	51	1.00
9405636--9405755	42	2.9	42	83	15	128	45	1	0	51	1.16
9405648--9405752	22	4.9	21	64	21	56	45	1	0	51	1.18
9405700--9405751	13	4.2	13	80	9	63	48	1	0	50	1.12
9405700--9405751	24	2.1	24	85	7	68	48	1	0	50	1.12
9405700--9405751	12	4.2	12	80	2	50	48	1	0	50	1.12
9406625--9406684	25	2.4	25	86	5	86	63	3	1	31	1.20
9411701--9411726	9	2.9	9	100	0	52	23	11	30	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9412008--9412048	3	13.7	3	89	0	64	31	0	2	65	1.05
9412109--9412149	13	3.2	12	83	16	55	9	2	2	85	0.78
9412100--9412161	7	8.6	7	79	12	63	16	1	3	79	0.95
9412100--9412161	22	2.9	21	80	11	72	16	1	3	79	0.95
9412605--9412941	162	2.1	162	88	2	489	37	5	8	47	1.59
9424922--9424975	24	2.2	24	90	6	83	20	50	0	29	1.49
9424922--9424975	12	4.5	12	80	0	63	20	50	0	29	1.49
9433173--9433224	22	2.4	21	87	9	70	19	5	1	73	1.14
9433818--9433859	20	2.0	20	86	4	57	54	0	4	40	1.21
9434337--9434391	16	3.1	17	80	17	51	47	7	1	43	1.41
9434413--9434446	17	2.0	17	88	0	50	47	0	0	52	1.00
9434732--9434756	2	12.5	2	100	0	50	52	0	0	48	1.00
9451414--9451457	2	22.0	2	100	0	88	50	0	0	50	1.00
9451766--9451807	20	2.0	22	86	9	61	54	2	0	42	1.13
9451751--9451827	33	2.3	34	82	12	97	58	1	0	40	1.06
9451760--9451820	13	5.2	13	75	18	53	54	1	0	44	1.10
9452934--9453064	32	4.1	31	74	14	104	47	0	0	51	1.06
9452934--9453022	30	2.9	29	77	12	81	46	0	1	52	1.07
9452952--9453048	30	3.2	29	77	9	79	45	0	1	53	1.07
9452983--9453058	35	2.1	38	83	11	97	50	0	1	48	1.09
9453531--9453590	27	2.2	27	82	5	68	45	3	0	51	1.17
9454321--9454367	17	2.7	17	81	18	53	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9454309--9454370	20	3.0	21	79	15	58	51	0	1	46	1.10
9454356--9454404	17	2.9	17	79	11	55	61	0	0	38	0.96
9454449--9454487	18	2.1	19	90	4	62	64	0	0	35	0.94
9463586--9463647	28	2.2	29	82	11	83	58	0	0	41	0.98
9464281--9464338	11	5.3	11	71	20	50	12	3	1	82	0.86
9464299--9464343	13	3.3	14	81	12	58	13	2	2	82	0.86
9470465--9470526	19	3.3	18	74	14	54	43	1	0	54	1.09
9476531--9476555	7	3.6	7	100	0	50	24	0	0	76	0.80
9484758--9485095	160	2.1	163	92	4	569	49	3	14	31	1.61
9489915--9489962	25	1.9	25	83	8	62	39	6	4	50	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147