genome.fa.s445.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  86  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15864041--15864105	13	5.1	13	75	3	51	18	10	20	50	1.76
15864039--15864087	25	1.9	26	87	4	73	18	14	18	48	1.80
15864096--15864152	28	2.0	28	86	0	78	22	1	19	56	1.51
15865862--15865913	7	7.8	6	80	18	50	48	32	1	17	1.58
15865862--15865908	14	3.5	13	85	8	58	46	31	2	19	1.61
15865862--15865914	27	2.0	27	88	7	81	47	32	1	18	1.60
15866542--15866588	9	5.2	9	92	0	58	46	4	0	48	1.21
15868398--15868489	29	3.1	30	81	10	102	31	26	5	36	1.79
15869872--15869935	12	5.4	12	79	9	69	78	1	15	4	1.00
15869884--15869937	23	2.3	23	90	6	83	79	0	14	5	0.90
15872499--15872592	39	2.4	40	79	13	113	34	11	11	42	1.78
15872386--15872705	41	7.9	40	71	9	177	36	14	10	38	1.80
15872566--15872794	40	5.7	41	74	4	153	41	12	10	35	1.78
15872869--15872930	22	2.8	22	70	4	54	37	24	9	29	1.87
15875380--15875444	21	3.0	21	78	10	69	43	23	1	32	1.63
15876025--15876078	23	2.3	23	78	9	56	57	0	7	35	1.27
15876908--15876940	6	5.7	6	96	3	59	12	0	15	72	1.12
15876913--15876954	13	3.3	13	90	3	59	14	0	14	71	1.15
15876921--15876959	12	3.2	12	85	7	51	15	0	15	69	1.20
15876975--15877011	3	13.0	3	83	11	51	29	0	2	67	1.04
15877189--15877237	20	2.5	20	80	9	55	63	2	4	30	1.24
15877387--15877428	19	2.2	20	86	4	59	69	4	4	21	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15889797--15889843	17	2.7	18	83	3	60	74	0	8	17	1.05
15889797--15889844	18	2.7	19	78	12	57	75	0	8	16	1.04
15894733--15894759	14	1.9	14	100	0	54	14	0	18	66	1.25
15897174--15897217	23	1.9	23	90	9	72	25	13	2	59	1.46
15897872--15897921	20	2.5	20	90	0	73	34	16	16	34	1.90
15898194--15898316	22	5.4	22	66	19	65	34	8	19	36	1.83
15898183--15898327	46	3.2	46	76	9	154	35	10	17	37	1.84
15898615--15898854	18	13.4	18	68	4	101	30	15	16	38	1.89
15898911--15899009	17	5.5	17	68	14	65	29	8	16	46	1.75
15898908--15899007	36	2.8	36	83	3	130	31	8	16	45	1.76
15899167--15899215	23	2.2	23	81	3	55	30	18	18	32	1.95
15901718--15901776	20	2.9	19	76	13	57	74	6	3	15	1.16
15903097--15903143	23	2.0	23	83	8	58	44	2	0	53	1.12
15903405--15903452	24	2.0	23	88	4	69	66	0	14	18	1.25
15904260--15904440	89	2.0	89	97	0	344	33	17	17	31	1.94
15908565--15908632	33	2.1	31	84	13	84	61	0	1	36	1.05
15909579--15909628	23	2.2	23	100	0	100	54	14	16	16	1.72
15910980--15911020	21	2.0	21	85	9	57	14	9	9	65	1.46
15912362--15912406	23	2.0	23	95	0	81	20	8	6	64	1.44
15918427--15918508	13	6.3	12	72	22	60	15	3	40	40	1.65
15918412--15918457	19	2.4	19	79	17	51	19	2	39	39	1.64
15918459--15918515	21	2.8	20	76	12	53	15	3	40	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15918446--15918529	13	6.1	14	71	17	52	17	2	36	42	1.63
15921072--15921254	48	3.8	47	74	12	149	43	15	15	25	1.87
15921097--15921455	47	7.6	47	73	10	182	43	12	16	27	1.84
15921121--15921440	94	3.4	92	78	10	285	42	12	17	27	1.85
15921120--15921440	95	3.4	92	77	10	294	42	12	17	27	1.84
15921772--15921944	78	2.2	77	87	5	251	40	19	16	23	1.91
15921924--15922097	53	3.3	53	79	4	183	37	12	18	32	1.87
15921980--15922019	20	2.0	21	95	5	73	30	10	27	32	1.89
15922075--15922147	30	2.4	30	81	2	83	35	17	15	31	1.91
15922366--15922538	41	4.2	41	74	5	136	39	13	17	29	1.88
15922555--15922663	37	2.9	36	82	11	116	41	5	20	33	1.75
15923160--15923751	301	2.0	301	89	2	911	33	11	18	35	1.88
15924324--15924389	19	3.4	18	78	19	71	1	18	1	78	0.90
15928735--15928769	13	2.7	13	90	0	52	8	0	11	80	0.92
15928749--15928794	23	2.0	23	87	8	67	15	0	13	71	1.14
15929591--15929646	25	2.2	25	81	6	69	48	5	16	30	1.68
15944450--15944482	16	2.1	16	100	0	66	30	0	24	45	1.53
15946311--15946386	12	6.5	12	71	8	50	25	2	9	63	1.37
15946335--15946384	17	2.9	18	82	8	59	28	2	8	62	1.35
15946977--15947015	20	2.0	20	94	0	69	17	0	25	56	1.41
15947122--15947162	21	2.0	21	100	0	82	26	4	9	58	1.50
15950372--15950407	17	2.0	19	89	10	58	19	22	8	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15951101--15951139	16	2.4	16	91	0	60	82	0	17	0	0.68
15951450--15951494	15	2.8	16	86	6	56	80	0	15	4	0.87
15956948--15957119	57	3.1	55	71	18	153	43	3	1	51	1.29
15961827--15961878	24	2.2	23	83	10	68	73	1	23	1	1.04
15970612--15970692	40	2.0	40	100	0	162	33	14	17	34	1.90
15980208--15980285	24	3.2	24	69	16	79	65	7	8	17	1.44
15980208--15980305	49	2.0	49	97	0	187	64	8	7	20	1.44
15980322--15980365	17	2.6	17	77	0	52	75	0	2	22	0.92
15981236--15981281	20	2.2	21	88	3	67	63	15	2	19	1.41
15981233--15981282	19	2.5	20	81	12	59	58	16	2	24	1.49
15981275--15981308	17	1.9	17	88	5	50	58	0	5	35	1.22
15981442--15981548	25	4.0	26	68	17	67	27	1	2	68	1.14
15981475--15981529	25	2.2	25	84	12	69	20	1	3	74	1.06
15981445--15981532	17	5.1	16	74	10	59	26	2	2	69	1.12
15981487--15981542	17	3.3	16	82	9	67	30	1	1	66	1.12
15981696--15981751	20	2.9	18	76	10	58	33	1	3	60	1.24
15981818--15981872	21	2.6	21	82	2	65	43	0	0	56	0.99
15981845--15981919	33	2.3	32	82	8	98	36	1	2	60	1.20
15982751--15982780	15	2.0	15	93	0	51	10	23	26	40	1.86
15986303--15986329	3	9.0	3	100	0	54	66	0	0	33	0.92
15986319--15986373	26	2.1	26	82	3	65	60	0	0	40	0.97
15987830--15987968	15	9.3	15	77	9	140	48	34	0	16	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15987916--15988024	51	2.1	51	83	6	132	51	33	0	14	1.43
15994010--15994041	8	3.9	8	95	4	55	90	0	0	9	0.45
15994009--15994042	9	3.9	9	92	7	61	91	0	0	8	0.43
15994010--15994042	17	1.9	17	100	0	66	90	0	0	9	0.44
15996483--15996805	122	2.7	122	89	1	479	32	13	15	38	1.87
15996900--15997126	110	2.1	111	80	2	260	23	18	18	39	1.92
15997016--15997198	87	2.1	88	87	3	262	22	22	18	37	1.94
15996812--15997308	197	2.5	196	81	4	536	23	19	17	38	1.93
15997115--15997419	110	2.8	109	83	6	341	23	19	17	40	1.91
15997337--15997506	88	1.9	88	84	2	225	22	17	15	43	1.87
15997223--15998009	197	4.0	197	81	3	856	23	19	16	40	1.91
15997525--15997717	88	2.2	87	80	1	224	22	20	16	40	1.91
15997713--15997907	87	2.3	87	83	6	261	23	20	16	38	1.92
15997885--15997936	22	2.3	23	80	12	72	28	21	17	32	1.96
15997799--15998029	109	2.1	110	81	9	276	24	20	17	37	1.94
15998286--15998345	22	2.7	23	81	5	77	30	20	15	35	1.93
15998411--15998454	22	2.0	22	86	0	61	29	27	13	29	1.94
15998520--15998562	22	2.0	22	85	0	59	27	20	18	32	1.96
15998314--15998782	109	4.3	108	82	6	498	22	21	17	38	1.94
15998294--15998782	110	4.5	109	82	5	524	22	21	17	38	1.94
15998314--15998782	219	2.1	219	83	3	568	22	21	17	38	1.94
15998742--15998804	22	2.9	22	97	0	117	19	28	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15998864--15998912	22	2.1	24	88	7	75	26	26	16	30	1.97
15998642--15998912	130	2.1	131	86	3	368	22	22	18	36	1.95
15998764--15998991	108	2.1	107	89	2	341	22	22	18	36	1.95
16000769--16000896	15	8.6	14	78	10	94	46	34	0	17	1.54
16000779--16000889	16	7.2	16	78	8	88	48	35	0	15	1.51
16000802--16000887	7	11.6	7	70	20	59	51	32	1	15	1.51
16000772--16000907	45	3.0	43	84	7	157	48	33	1	16	1.55
16000772--16000896	30	4.2	29	81	11	128	48	33	0	17	1.53
16002177--16002205	1	29.0	1	100	0	58	100	0	0	0	0.00
16005733--16005772	21	2.0	20	85	5	53	75	2	5	17	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147