genome.fa.s445.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  65  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12282227--12282539	85	3.7	85	92	0	509	34	10	12	43	1.76
12283941--12283977	5	8.0	5	96	3	53	43	0	13	43	1.44
12284042--12284167	63	2.0	63	96	0	234	39	12	15	31	1.85
12289398--12289432	12	2.9	12	91	0	61	45	37	0	17	1.48
12289421--12289663	79	3.1	79	80	5	301	43	25	9	21	1.82
12295315--12295377	21	3.0	21	95	0	108	33	1	31	33	1.68
12299573--12300001	134	3.2	133	80	2	466	39	18	13	28	1.88
12301489--12301522	2	17.0	2	100	0	68	0	50	0	50	1.00
12301524--12301563	2	20.0	2	100	0	80	50	0	0	50	1.00
12302193--12302226	15	2.2	16	89	5	52	35	2	8	52	1.47
12302703--12302746	11	4.3	11	80	13	58	56	22	0	20	1.42
12302739--12302768	15	2.0	15	93	0	51	53	16	0	30	1.44
12303290--12303335	17	2.7	17	93	0	74	45	26	0	28	1.54
12304833--12304872	18	2.2	18	90	0	62	22	15	35	27	1.94
12305230--12305288	3	19.7	3	79	6	66	28	28	3	38	1.73
12309964--12310123	59	2.7	59	80	6	173	55	20	4	20	1.61
12313367--12313637	61	4.6	60	83	9	317	36	14	6	43	1.71
12313781--12313852	38	1.9	38	83	13	96	76	5	2	15	1.09
12314690--12314808	3	38.3	3	71	20	68	68	0	4	26	1.14
12314692--12314796	24	4.5	24	82	8	128	67	0	3	27	1.14
12314688--12314811	48	2.8	44	80	15	157	67	0	4	26	1.16
12314863--12314900	19	2.0	20	84	5	51	28	18	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12315091--12315405	42	7.4	42	78	9	237	41	17	14	26	1.88
12315296--12315418	42	3.0	41	84	3	149	47	15	14	22	1.82
12324552--12324587	3	12.3	3	94	5	65	33	0	0	66	0.92
12325442--12325496	24	2.4	24	81	6	60	16	0	5	78	0.93
12325484--12325532	27	1.9	26	84	12	66	10	8	4	77	1.10
12325607--12325689	36	2.2	38	82	10	107	61	9	3	25	1.43
12326480--12326573	46	2.0	46	91	4	154	20	11	4	63	1.44
12329590--12329634	5	9.6	5	86	13	51	86	0	8	4	0.69
12329590--12329630	9	4.4	9	90	3	55	87	0	7	4	0.65
12331714--12331849	3	46.7	3	81	8	156	32	3	1	62	1.22
12331714--12331849	32	4.2	32	86	10	181	32	3	1	62	1.22
12331748--12331849	26	3.9	27	92	2	156	34	3	0	61	1.14
12332282--12332325	18	2.4	18	84	3	52	27	0	31	40	1.56
12332294--12332353	18	3.2	18	81	9	66	10	1	31	56	1.42
12332323--12332365	9	4.9	9	91	5	70	0	4	34	60	1.17
12332305--12332365	17	3.3	18	90	6	88	4	3	34	57	1.36
12332743--12332808	17	4.1	15	76	19	53	18	3	4	74	1.12
12339102--12339174	24	2.8	25	75	10	76	41	4	16	38	1.67
12339102--12339175	14	5.6	14	78	13	68	40	4	17	37	1.69
12339271--12339340	22	3.1	22	75	2	68	28	10	20	41	1.84
12339461--12339531	33	2.2	33	81	0	79	28	14	19	38	1.91
12340073--12340119	4	11.8	4	86	0	67	23	4	2	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12341303--12341327	13	1.9	13	100	0	50	56	0	0	44	0.99
12343073--12343168	46	2.1	46	90	0	147	31	10	8	50	1.66
12343853--12343885	9	3.7	9	92	8	50	78	0	0	21	0.75
12348591--12348635	11	3.9	11	88	11	72	48	24	0	26	1.51
12348587--12348636	24	2.1	24	100	0	100	50	24	0	26	1.50
12354470--12354499	15	2.1	14	93	6	51	23	0	0	76	0.78
12354817--12354850	9	3.8	9	84	0	50	35	2	2	58	1.28
12355504--12355621	58	2.0	57	83	6	148	37	9	7	45	1.65
12356130--12356168	20	2.0	20	94	0	69	7	15	15	61	1.55
12359977--12360021	13	3.4	13	78	6	54	24	4	2	68	1.19
12360141--12360182	14	3.2	13	81	15	50	21	0	2	76	0.90
12360137--12360180	21	2.2	19	84	12	52	25	0	2	72	0.96
12360490--12360522	9	3.9	9	88	11	52	51	0	0	48	1.00
12360650--12360834	93	2.0	96	85	3	259	32	9	14	43	1.78
12360740--12361064	86	3.8	86	88	3	458	35	11	14	38	1.82
12361028--12361097	33	2.2	33	89	2	106	37	5	18	38	1.75
12360945--12361184	120	2.0	120	93	0	408	37	10	14	37	1.80
12360859--12361270	206	2.0	206	91	0	673	36	11	14	37	1.83
12361065--12361734	86	7.7	86	89	3	925	37	11	12	37	1.81
12361065--12361734	177	3.9	173	88	3	945	37	11	12	37	1.81
12361065--12361714	263	2.5	258	88	2	942	38	11	12	36	1.80
12363465--12363519	17	3.5	15	77	18	58	12	3	5	78	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12366148--12366201	24	2.2	23	81	18	65	25	5	3	64	1.32
12366252--12366280	3	9.7	3	100	0	58	31	0	0	68	0.89
12367213--12367245	12	2.8	12	100	0	66	12	0	6	81	0.85
12367209--12367263	28	2.0	28	85	0	74	14	1	9	74	1.14
12367273--12367722	153	3.0	152	95	1	812	29	14	17	38	1.90
12371373--12371441	28	2.5	28	78	7	77	73	0	18	7	1.05
12371403--12371454	16	3.1	16	80	8	50	75	0	19	5	1.01
12372685--12373280	41	14.5	41	90	4	932	22	17	24	34	1.96
12373287--12373403	1	117.0	1	73	0	72	84	6	0	7	0.81
12373287--12373397	10	11.1	10	76	12	95	84	7	0	7	0.81
12373288--12373403	31	3.7	30	76	13	108	84	6	0	7	0.82
12373292--12373397	50	2.1	50	87	6	153	83	7	0	7	0.84
12373573--12373626	24	2.2	23	81	18	65	25	5	3	64	1.32
12373677--12373705	3	9.7	3	100	0	58	31	0	0	68	0.89
12374246--12374288	20	2.2	20	95	0	77	44	32	18	4	1.71
12374593--12374634	14	3.1	15	80	19	56	7	42	21	28	1.79
12374593--12374629	13	2.7	14	80	20	51	8	43	24	24	1.81
12374683--12374726	15	2.9	15	86	0	52	9	0	4	86	0.70
12374681--12374709	1	29.0	1	100	0	58	0	0	0	100	0.00
12374748--12375198	153	3.0	152	95	0	812	29	14	17	38	1.90
12375998--12376199	107	1.9	106	80	4	235	42	14	9	33	1.78
12377202--12377237	19	1.9	19	94	5	65	75	5	8	11	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12378806--12378843	19	2.0	20	84	5	51	34	13	2	50	1.55
12378873--12378909	19	1.9	19	94	0	65	27	0	24	48	1.51
12379702--12379727	13	2.0	13	100	0	52	38	0	46	15	1.46
12379737--12379779	21	2.0	21	86	0	59	34	0	27	37	1.57
12380044--12380083	21	1.9	21	84	0	53	47	5	17	30	1.69
12388138--12388195	29	2.0	29	96	0	107	34	6	36	22	1.81
12392499--12392525	5	5.4	5	100	0	54	59	0	0	40	0.98
12394583--12394656	23	3.0	23	70	24	69	33	12	12	41	1.79
12395565--12395603	5	7.8	5	100	0	78	58	0	0	41	0.98
12401928--12401973	9	5.1	9	89	7	51	23	0	6	69	1.11
12402651--12402705	19	2.8	20	81	10	69	32	27	14	25	1.95
12403027--12403161	17	7.5	17	70	21	57	17	5	2	73	1.16
12403086--12403143	10	5.4	11	73	17	50	12	6	1	79	1.00
12403098--12403156	10	6.1	10	76	13	52	13	6	1	77	1.03
12403091--12403166	27	2.8	26	81	13	75	14	7	1	76	1.07
12403171--12403531	60	5.9	60	83	8	446	45	8	13	32	1.72
12403207--12403529	119	2.7	119	96	1	583	45	7	13	33	1.72
12408129--12408177	24	2.1	24	84	3	64	42	20	6	30	1.76
12408128--12408206	28	3.0	26	80	10	81	45	22	5	26	1.73
12408153--12408218	28	2.4	28	84	0	78	46	19	7	25	1.76
12408704--12409830	191	6.0	188	81	7	1103	40	11	13	34	1.81
12408705--12409850	378	3.0	374	83	4	1326	40	11	13	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12416872--12416930	21	2.9	21	69	2	57	45	13	23	16	1.83
12417611--12417677	34	2.0	34	84	0	89	34	16	17	31	1.93
12417626--12417710	34	2.5	34	82	0	98	34	16	15	34	1.90
12419065--12419115	22	2.4	22	80	12	61	49	0	1	49	1.12
12420357--12420408	22	2.2	25	80	10	65	65	7	7	19	1.43
12420555--12420581	5	5.4	5	100	0	54	59	0	0	40	0.98
12421914--12421956	20	2.2	20	100	0	86	20	4	18	55	1.60
12423247--12423836	57	9.8	59	83	9	696	33	12	8	45	1.72
12423399--12423440	22	2.0	22	86	9	61	28	2	9	59	1.41
12423435--12423523	27	3.2	27	62	20	65	37	14	6	41	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147