genome.fa.s445.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  137  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24996440--24996465	13	2.0	13	100	0	52	23	7	0	69	1.14
24997497--24997585	30	3.0	30	75	3	99	47	3	12	37	1.58
24998774--24998798	2	12.5	2	100	0	50	48	0	0	52	1.00
25003080--25003111	15	2.1	15	94	0	55	43	0	0	56	0.99
25005256--25005294	14	2.9	13	85	14	53	53	0	0	46	1.00
25005303--25005363	26	2.3	25	78	18	61	44	1	0	54	1.10
25005346--25005410	25	2.5	26	80	11	73	36	1	0	61	1.05
25005360--25005397	17	2.2	17	86	9	51	36	0	0	63	0.95
25005865--25005913	23	2.2	22	82	10	55	51	0	0	48	1.00
25006168--25006228	24	2.8	22	76	18	56	39	0	1	59	1.08
25006185--25006245	30	2.0	30	84	6	79	40	0	1	57	1.08
25006218--25006270	23	2.4	23	90	9	85	47	0	0	52	1.00
25010853--25011118	57	4.6	58	81	12	271	39	4	4	51	1.43
25011043--25011076	13	2.7	13	90	4	52	44	0	0	55	0.99
25011048--25011086	13	3.0	12	88	11	51	51	0	0	48	1.00
25014928--25014969	2	21.0	2	100	0	84	50	0	0	50	1.00
25016174--25016200	14	1.9	14	100	0	54	70	0	0	29	0.88
25016422--25016458	19	1.9	19	88	0	56	29	8	13	48	1.71
25016772--25016810	20	2.0	20	85	10	53	7	7	17	66	1.40
25018914--25018944	16	1.9	16	93	0	53	41	0	3	54	1.16
25018919--25018952	16	2.2	16	89	5	52	50	2	0	47	1.16
25018953--25018991	21	1.9	21	84	5	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25019041--25019142	8	13.5	8	75	14	65	43	0	0	55	1.06
25019104--25019221	15	8.0	15	71	20	72	44	0	1	53	1.10
25019039--25019219	88	2.1	84	83	10	219	43	0	1	55	1.11
25019056--25019196	40	3.7	39	78	15	122	43	0	1	54	1.08
25023389--25023423	4	8.8	4	100	0	70	51	22	0	25	1.48
25026281--25026750	161	2.9	161	89	6	670	40	17	14	27	1.88
25027125--25027171	19	2.5	19	82	0	58	21	19	29	29	1.97
25027791--25027819	3	9.7	3	100	0	58	68	0	0	31	0.89
25027981--25028045	20	3.2	20	91	0	94	20	30	32	16	1.95
25028159--25028254	1	96.0	1	88	0	138	1	0	5	93	0.38
25028146--25028255	13	7.9	14	87	10	138	2	0	6	90	0.52
25028146--25028253	48	2.2	48	95	1	189	2	0	5	91	0.49
25028262--25028876	41	15.2	39	89	8	869	38	21	16	23	1.93
25028262--25028876	83	7.6	80	91	5	926	38	21	16	23	1.93
25029888--25029992	8	11.8	9	75	17	87	11	12	0	75	1.10
25029895--25029979	9	9.6	10	77	20	52	11	12	0	75	1.05
25029917--25029988	17	4.3	17	84	10	69	12	9	1	76	1.08
25033635--25033659	2	12.5	2	100	0	50	0	0	48	52	1.00
25035706--25035745	16	2.5	16	87	0	62	50	17	0	32	1.47
25036721--25036754	16	2.1	16	88	0	50	47	0	2	50	1.16
25036821--25036884	25	2.7	24	85	4	85	39	0	1	59	1.07
25043250--25043279	10	3.1	10	95	4	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25048590--25048617	2	14.0	2	100	0	56	50	0	0	50	1.00
25052270--25052320	27	1.9	27	84	4	68	45	0	3	50	1.20
25058104--25058151	14	3.5	13	77	5	51	62	2	2	33	1.18
25059476--25059512	17	2.1	19	85	10	51	45	21	8	24	1.78
25061265--25061331	30	2.3	30	84	5	84	44	10	0	44	1.38
25061535--25061597	32	2.0	32	100	0	126	36	22	12	28	1.91
25061540--25061606	32	2.3	28	85	14	84	37	19	11	31	1.88
25062231--25062268	19	2.0	19	85	10	51	57	0	0	42	0.98
25064528--25064576	17	2.9	17	87	0	62	34	12	18	34	1.88
25070533--25070598	29	2.3	28	77	10	71	48	1	1	48	1.20
25070799--25070828	15	2.0	15	100	0	60	53	0	0	46	1.00
25083678--25083715	13	2.9	13	80	11	51	42	2	5	50	1.39
25085770--25085813	20	2.2	20	88	8	63	22	9	11	56	1.62
25096824--25096876	10	5.6	10	77	18	60	26	1	0	71	0.96
25098007--25098032	3	8.7	3	100	0	52	69	0	0	30	0.89
25098419--25098630	94	2.3	94	85	4	277	43	13	9	33	1.77
25098684--25098717	16	2.1	17	94	5	61	32	11	17	38	1.86
25098702--25098928	50	4.7	49	77	8	196	37	14	14	33	1.87
25098505--25098889	210	1.8	210	84	2	522	40	14	11	34	1.81
25106212--25106244	15	2.1	16	88	5	50	45	0	0	54	0.99
25107718--25107834	16	7.2	16	74	10	94	44	29	3	22	1.69
25107812--25107877	23	2.8	24	81	4	71	45	25	3	25	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25114567--25114597	13	2.5	12	90	10	53	87	3	9	0	0.66
25115761--25115789	5	6.0	5	92	8	51	79	0	0	20	0.74
25115761--25115789	9	3.0	10	90	10	51	79	0	0	20	0.74
25115761--25115787	14	1.9	14	100	0	54	81	0	0	18	0.69
25115782--25116030	32	7.7	32	73	9	177	33	19	13	33	1.90
25115789--25116035	65	3.8	65	78	7	252	31	19	14	34	1.92
25116697--25116742	24	1.9	24	90	0	74	23	23	21	30	1.99
25117042--25117079	18	2.1	18	95	0	67	47	0	0	52	1.00
25117048--25117094	21	2.2	21	81	7	60	51	0	0	48	1.00
25118549--25118627	17	4.9	16	80	7	88	48	27	0	24	1.52
25118541--25118670	16	8.2	16	71	17	67	46	26	0	26	1.53
25118564--25118620	16	3.6	15	83	9	69	45	31	0	22	1.53
25118596--25118664	24	2.9	24	77	16	72	46	26	0	27	1.53
25121730--25121839	43	2.7	41	77	18	120	20	3	5	70	1.24
25122650--25122801	8	18.4	8	68	18	73	16	1	2	78	0.95
25122674--25122813	6	22.7	6	72	19	87	17	2	2	77	0.98
25122649--25122706	15	3.9	15	82	13	57	15	0	1	82	0.74
25122649--25122706	23	2.5	24	83	8	68	15	0	1	82	0.74
25122667--25122819	5	29.0	5	72	21	84	16	2	2	77	0.99
25122666--25122817	47	3.3	45	74	19	111	16	2	2	78	0.98
25122858--25123071	64	3.5	60	81	6	216	41	6	14	37	1.71
25122858--25123071	59	3.5	60	83	6	236	41	6	14	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25123017--25123043	14	1.9	14	100	0	54	59	11	0	29	1.32
25132208--25132234	14	1.9	14	100	0	54	51	0	11	37	1.37
25137247--25137288	16	2.9	14	80	13	57	71	0	0	28	0.86
25142058--25142130	27	2.7	27	82	0	92	23	27	13	35	1.92
25142226--25142319	48	2.0	47	81	12	111	20	34	10	35	1.87
25145161--25145185	3	8.3	3	100	0	50	36	0	0	64	0.94
25145220--25145278	29	2.0	29	87	6	84	49	1	3	45	1.28
25145345--25145416	27	2.7	26	75	16	67	43	0	2	54	1.15
25148063--25148121	5	12.6	5	77	16	56	32	1	0	66	1.02
25148064--25148122	11	5.2	11	76	15	66	30	1	0	67	1.00
25148064--25148108	16	2.7	17	77	16	58	28	2	0	68	1.01
25148069--25148123	13	4.0	14	76	19	62	29	1	0	69	0.99
25148573--25148622	24	2.0	25	88	3	75	36	6	12	46	1.66
25152258--25152316	29	2.0	30	83	9	77	37	5	0	57	1.21
25152276--25152360	30	2.9	27	77	18	73	34	4	2	58	1.31
25152256--25152360	28	3.7	28	75	16	74	38	3	1	56	1.29
25153227--25153251	2	12.5	2	100	0	50	48	0	0	52	1.00
25154127--25154171	22	2.0	22	86	0	63	46	4	15	33	1.66
25154835--25154902	31	2.4	26	76	21	82	54	0	2	42	1.15
25156733--25156761	9	3.0	10	90	10	51	10	0	0	89	0.48
25157020--25157052	16	2.0	17	94	5	59	30	0	0	69	0.88
25157716--25157744	13	2.1	14	93	6	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25158165--25158247	40	2.0	41	88	2	123	42	0	0	57	0.98
25158221--25158264	22	2.0	22	86	4	61	29	2	4	63	1.26
25159084--25159108	11	2.3	11	100	0	50	48	0	24	28	1.52
25163207--25163433	114	1.9	115	89	7	348	46	5	3	44	1.43
25165348--25165396	21	2.2	23	85	10	66	46	0	4	48	1.20
25167958--25167990	2	17.0	2	87	6	50	54	0	0	45	0.99
25168062--25168162	50	2.0	50	94	0	175	36	18	16	27	1.93
25171907--25171981	30	2.5	30	84	4	98	45	4	2	48	1.35
25171949--25171991	22	2.0	22	81	9	52	53	2	0	44	1.13
25171995--25172029	16	2.1	17	94	5	63	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147