genome.fa.s445.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  3  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338687--338752	10	6.9	9	73	23	55	19	6	3	71	1.21
338696--338752	27	2.1	27	84	12	73	21	5	3	70	1.22
338670--338759	37	2.4	37	83	10	103	20	5	3	71	1.21
338687--338759	20	3.8	19	77	17	71	19	5	4	71	1.22
340279--340309	15	2.1	15	93	0	53	77	6	0	16	0.97
359149--359182	2	17.0	2	100	0	68	50	0	0	50	1.00
366895--366949	27	2.0	27	100	0	110	20	14	14	50	1.77
367836--367862	2	13.5	2	100	0	54	51	0	0	48	1.00
368563--368587	2	12.5	2	100	0	50	52	0	0	48	1.00
370600--370657	2	29.0	2	85	0	80	43	5	1	50	1.35
377515--377572	29	2.0	29	96	0	107	32	22	17	27	1.96
378521--378545	6	4.2	6	100	0	50	0	0	36	64	0.94
385772--385808	19	1.9	19	88	0	56	75	10	5	8	1.17
388523--388579	20	2.8	20	72	15	55	47	0	1	50	1.11
388614--388655	22	2.0	22	90	4	68	35	0	0	64	0.94
390303--390344	13	3.3	13	76	3	50	42	0	0	57	0.99
390374--390436	27	2.4	29	80	15	75	49	0	1	49	1.10
390914--390946	17	2.0	17	88	5	50	51	0	0	48	1.00
396647--396701	27	2.1	27	83	9	71	54	3	5	36	1.41
397626--397696	36	2.0	36	91	0	115	54	1	8	35	1.39
401934--401969	2	18.0	2	100	0	72	0	0	50	50	1.00
417927--417994	23	3.0	21	75	14	64	48	1	1	48	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418476--418514	19	2.1	19	85	0	51	35	2	5	56	1.35
418546--418590	20	2.2	20	84	8	54	53	2	2	42	1.25
418597--418636	21	2.0	21	90	9	66	42	2	0	55	1.13
418557--418649	48	1.9	47	81	12	109	47	1	0	51	1.07
426650--426702	19	2.9	18	75	5	54	32	5	1	60	1.31
429304--430072	256	3.0	256	97	0	1466	32	21	19	26	1.97
434677--434734	22	2.6	22	81	7	64	37	6	8	46	1.61
435177--435205	15	1.9	15	100	0	58	27	0	3	68	1.05
437327--437377	21	2.4	21	100	0	102	41	13	17	27	1.87
438183--438221	20	2.0	20	95	5	71	10	5	7	76	1.13
445217--445263	18	2.6	18	89	0	76	34	8	12	44	1.73
460905--461027	60	2.0	60	98	0	237	30	0	18	50	1.47
464631--464683	17	3.4	17	70	24	62	47	13	24	15	1.81
464618--464685	29	2.3	29	100	0	136	50	13	23	13	1.76
468329--468366	18	2.1	18	95	0	67	36	10	13	39	1.79
470083--470124	20	2.1	20	100	0	84	42	26	4	26	1.75
471921--471963	20	2.1	21	87	12	63	30	4	2	62	1.28
487335--487368	13	2.5	14	85	9	52	61	0	2	35	1.11
487533--487575	20	2.1	21	86	4	61	51	4	4	39	1.44
488012--488058	24	2.0	23	87	4	67	34	10	6	48	1.63
493394--493448	27	2.0	27	96	0	101	36	14	23	25	1.93
498365--498403	18	2.0	20	90	9	64	43	0	2	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498590--498638	25	2.0	25	100	0	98	48	6	12	32	1.65
500942--500976	2	17.5	2	100	0	70	51	0	48	0	1.00
502553--502623	20	3.5	20	67	12	56	53	0	2	43	1.15
505625--505670	19	2.3	20	92	3	76	67	0	0	32	0.91
505625--505670	10	4.7	10	79	15	60	67	0	0	32	0.91
508068--508096	15	1.9	15	100	0	58	10	41	6	41	1.66
510310--510334	11	2.3	11	100	0	50	72	0	28	0	0.86
512242--512270	2	15.0	2	92	7	51	51	0	0	48	1.00
515800--515893	30	3.1	30	98	0	179	20	8	7	63	1.46
517914--517985	26	2.8	25	82	2	90	13	23	30	31	1.94
518982--519071	41	2.2	41	82	7	110	62	5	6	25	1.42
530151--530683	89	6.0	88	76	5	371	19	22	14	43	1.88
530104--530621	178	2.9	175	79	4	513	19	21	15	43	1.87
530957--531009	26	2.0	26	82	7	63	18	22	26	32	1.97
531073--531127	3	18.3	3	81	7	67	25	1	0	72	0.94
531075--531130	18	3.1	18	86	0	76	23	1	0	75	0.90
531186--531229	6	7.3	6	89	0	61	18	2	2	77	0.98
531085--531283	99	2.0	99	97	0	371	24	16	5	53	1.63
532030--532071	9	4.7	9	82	5	50	14	2	0	83	0.75
532109--532192	44	1.9	45	90	4	136	59	7	7	26	1.50
536189--536219	15	2.1	15	93	0	53	41	0	0	58	0.98
538459--538534	25	3.1	23	75	17	73	77	0	21	1	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538462--538536	27	2.9	26	81	18	95	77	0	21	1	0.85
538469--538525	30	1.9	30	89	7	89	77	0	22	0	0.77
538467--538534	10	6.8	10	72	12	59	79	0	20	0	0.73
538632--538679	24	2.1	24	84	7	64	54	2	8	35	1.42
538609--538689	23	3.6	22	71	17	69	59	3	8	28	1.44
538669--538708	17	2.3	18	86	4	55	65	2	5	27	1.27
538763--538824	26	2.4	26	76	7	63	64	11	11	12	1.50
539471--539570	22	4.5	22	65	25	68	27	9	11	53	1.66
539460--539589	65	2.0	65	100	0	260	30	7	10	50	1.65
539749--539796	15	3.2	15	87	0	78	54	22	2	20	1.55
544620--544667	13	3.8	12	78	10	60	81	2	12	4	0.93
546683--546737	23	2.4	24	81	9	69	72	3	10	12	1.24
546932--547039	57	1.9	57	90	0	171	33	15	12	37	1.86
546908--547024	29	4.1	29	72	10	96	31	13	13	41	1.84
547107--547207	28	3.6	28	78	7	98	28	17	17	35	1.93
547076--547207	57	2.3	56	82	7	151	28	18	18	34	1.94
547107--547226	28	4.3	27	74	10	82	29	16	17	36	1.92
546928--547226	85	3.5	85	76	4	260	30	17	16	35	1.92
547598--547747	81	1.9	81	84	0	201	34	9	17	39	1.82
547899--547941	3	14.3	3	100	0	86	67	0	0	32	0.91
548051--548130	35	2.3	35	82	4	99	18	18	8	53	1.69
548371--548445	27	2.8	25	71	15	60	76	10	4	9	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549929--549998	24	3.1	22	75	18	65	75	0	21	2	0.93
550096--550181	21	3.9	22	75	7	68	60	8	9	22	1.53
550687--550748	29	2.2	29	80	16	76	62	6	8	22	1.45
551600--551651	17	3.1	16	89	10	70	48	36	0	15	1.45
551587--551648	24	2.6	24	89	2	90	50	33	1	14	1.53
551603--551654	8	6.4	8	76	12	52	53	32	0	13	1.40
551600--551651	9	6.2	9	76	17	58	48	36	0	15	1.45
551610--551686	15	4.9	15	78	7	64	50	25	1	22	1.56
552923--552947	10	2.5	10	100	0	50	0	12	0	88	0.53
554799--554827	2	14.5	2	100	0	58	51	0	0	48	1.00
558386--558437	26	2.0	26	100	0	104	26	7	19	46	1.77
560049--560133	42	2.0	42	97	0	161	34	4	14	47	1.65
565513--565557	2	22.5	2	90	0	72	44	4	0	51	1.21
568471--568499	2	14.5	2	100	0	58	48	0	0	51	1.00
569608--569645	10	3.9	10	96	3	69	57	0	0	42	0.98
570398--570465	22	3.4	18	73	25	57	39	0	1	58	1.07
593042--593079	3	13.0	3	83	5	51	36	34	0	28	1.58
593392--593425	17	1.9	18	94	5	61	17	11	5	64	1.45
596297--596327	11	2.8	11	95	0	53	22	0	25	51	1.48
596352--596501	52	2.8	53	84	5	187	50	7	16	26	1.71
597048--597116	25	2.8	25	72	0	66	44	10	27	17	1.80
597471--597627	52	3.0	50	83	3	179	44	6	20	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597863--598011	74	2.0	74	89	0	226	24	5	28	41	1.77
598200--598261	2	31.0	2	100	0	124	0	50	0	50	1.00
600096--600148	27	1.9	28	84	3	72	47	0	3	49	1.19
602045--602078	11	3.2	11	87	8	52	38	0	0	61	0.96
607082--607203	51	2.4	51	97	0	226	53	6	22	18	1.67
614757--614819	3	21.3	3	96	3	119	65	0	0	34	0.93
615228--615253	11	2.4	11	100	0	52	76	0	7	15	0.99
616817--616859	16	2.4	16	85	14	50	60	4	4	30	1.37
622405--622434	8	3.6	8	95	4	51	86	0	13	0	0.57
626551--626579	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147