Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  72  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13671847--13672654
57
13.6
57
87
8
1102
45
7
12
33
1.71
13671838--13672654
180
4.6
176
89
6
1177
45
7
12
33
1.71
13671831--13672654
296
2.8
296
92
4
1335
45
7
12
33
1.71
13676421--13676481
29
2.1
29
81
6
70
78
0
18
3
0.88
13676430--13676454
11
2.3
11
100
0
50
92
0
8
0
0.40
13677723--13678038
42
7.7
42
88
7
456
22
18
21
37
1.94
13677723--13678038
82
3.9
82
92
4
530
22
18
21
37
1.94
13678048--13678136
1
89.0
1
72
0
70
86
10
0
3
0.68
13678048--13678136
10
9.3
10
84
9
98
86
10
0
3
0.68
13678048--13678136
29
3.1
28
85
11
110
86
10
0
3
0.68
13678048--13678129
39
2.1
39
86
10
116
86
10
0
2
0.66
13678230--13678268
21
1.9
21
89
5
62
20
35
28
15
1.93
13678314--13678344
14
2.2
14
94
0
53
0
16
0
83
0.64
13678386--13678468
25
3.3
24
77
19
64
34
0
7
57
1.26
13678457--13678535
36
2.2
37
82
11
92
26
3
2
67
1.21
13679045--13679100
20
2.9
19
76
5
58
30
25
14
30
1.95
13679446--13679492
12
4.1
11
82
12
51
14
2
4
78
0.99
13679515--13679539
10
2.5
10
100
0
50
16
0
0
84
0.63
13679575--13680297
182
4.0
179
93
3
1173
46
8
12
33
1.71
13680838--13680867
3
10.3
3
92
7
53
63
0
0
36
0.95
13681096--13681187
26
3.5
26
78
0
112
31
16
29
22
1.96
13681475--13681763
89
3.2
88
79
4
278
45
13
21
19
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13693292--13693329
10
3.8
10
85
0
58
71
13
0
15
1.16
13693775--13693892
3
40.7
3
81
9
93
59
0
7
32
1.31
13697619--13697660
19
2.3
18
87
4
57
64
9
0
26
1.24
13699121--13699159
20
1.9
20
89
5
60
61
7
5
25
1.44
13700747--13701066
143
2.2
145
82
4
371
42
12
11
33
1.79
13702670--13702738
19
3.7
18
74
14
59
30
2
5
60
1.34
13702689--13702775
20
4.3
21
76
12
76
34
2
5
57
1.35
13702631--13703160
212
2.5
213
77
10
526
31
7
6
54
1.53
13702640--13703444
430
1.9
437
79
7
935
30
8
6
54
1.57
13702640--13703489
218
3.9
215
75
8
704
31
8
6
53
1.57
13703855--13703892
17
2.2
18
90
4
60
26
5
5
63
1.37
13702659--13705057
931
2.6
939
78
6
2163
30
9
6
52
1.60
13704592--13704646
21
2.7
20
71
18
51
34
5
3
56
1.40
13704790--13705226
216
2.0
214
79
6
463
30
9
6
54
1.58
13702914--13705335
941
2.6
930
78
6
2162
30
10
6
52
1.61
13704932--13705421
216
2.2
216
79
4
520
30
10
6
51
1.63
13705950--13705985
18
2.0
18
94
0
63
25
5
5
63
1.38
13707024--13707058
15
2.5
14
86
13
54
17
11
5
65
1.43
13710689--13710958
58
4.6
57
80
7
283
37
14
7
40
1.75
13710993--13711129
6
22.8
6
70
16
61
72
0
3
23
1.05
13710984--13711128
12
12.4
11
72
18
82
72
0
4
22
1.06
13710993--13711128
17
7.6
17
69
16
80
72
0
3
23
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13710999--13711115
9
12.5
10
72
22
69
70
0
3
25
1.09
13711058--13711093
3
12.0
3
88
11
56
66
0
0
33
0.92
13711906--13712078
4
41.8
4
65
19
61
71
2
3
22
1.12
13711948--13712074
9
12.2
10
68
19
57
72
2
3
22
1.10
13711906--13712082
15
11.8
15
67
18
59
71
2
3
22
1.12
13711938--13712080
45
3.1
44
76
16
139
73
2
2
21
1.07
13711923--13712074
41
4.0
39
74
16
108
71
2
3
23
1.14
13711960--13712086
52
2.5
49
79
15
127
71
2
3
22
1.14
13711965--13712085
16
7.4
15
71
18
75
72
2
2
22
1.08
13712285--13712323
16
2.5
15
84
8
51
2
2
10
84
0.81
13712339--13712857
42
12.1
42
85
2
644
40
18
15
26
1.90
13712339--13712857
86
6.1
84
86
3
644
40
18
15
26
1.90
13712351--13712857
212
2.4
212
88
3
746
40
17
14
26
1.89
13713156--13713237
43
1.9
42
87
7
121
34
15
12
37
1.85
13713312--13713365
28
1.9
28
81
7
65
38
18
9
33
1.83
13713412--13713470
22
2.7
21
81
5
64
33
18
8
38
1.81
13714595--13714629
17
2.0
18
88
5
54
5
14
0
80
0.89
13716899--13716944
24
1.9
24
82
8
58
10
23
4
60
1.47
13718583--13718746
58
2.8
58
84
9
203
35
14
7
42
1.75
13718659--13718816
86
1.8
86
89
5
248
35
17
6
40
1.75
13718841--13718904
17
3.9
17
74
10
62
79
0
4
15
0.89
13718837--13718903
22
3.1
21
81
14
84
79
0
5
14
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13718837--13718905
11
6.4
11
75
18
65
78
0
7
14
0.96
13718925--13718972
17
2.9
16
84
9
60
75
0
0
25
0.81
13718925--13718975
21
2.5
20
87
12
70
76
0
0
23
0.79
13718925--13718976
20
2.5
20
81
9
61
76
0
0
23
0.78
13719308--13719346
20
2.0
20
84
0
51
28
17
17
35
1.94
13719795--13719865
17
4.1
17
71
18
56
64
2
7
25
1.32
13719787--13719969
46
4.0
45
76
12
147
69
2
4
22
1.18
13719785--13719973
4
46.8
4
66
20
58
70
2
4
22
1.17
13719903--13719969
15
4.4
15
72
10
55
76
1
1
20
0.95
13719835--13719973
33
4.4
31
69
18
81
71
1
4
22
1.11
13719914--13719980
18
3.6
18
75
20
66
77
1
1
19
0.92
13719882--13719979
39
2.4
41
75
9
103
73
1
2
23
1.00
13720091--13720144
11
4.9
11
74
17
58
51
1
11
35
1.48
13720091--13720192
44
2.3
43
78
8
116
47
5
12
34
1.66
13720089--13720200
22
5.1
22
78
6
102
48
7
11
33
1.67
13720400--13720457
22
2.6
22
76
10
64
44
6
12
36
1.68
13720632--13720774
22
6.6
22
75
7
87
46
4
9
38
1.58
13720665--13720704
19
2.1
19
85
0
53
45
5
10
40
1.60
13720722--13720772
11
4.6
11
76
9
50
49
1
9
39
1.47
13720783--13720866
22
3.8
22
73
14
66
48
7
7
36
1.58
13720784--13720868
44
1.9
44
90
0
134
49
8
5
36
1.57
13720796--13720941
66
2.2
67
74
8
154
48
7
7
36
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13720796--13720932
22
6.2
22
78
9
91
48
8
6
37
1.59
13721236--13721320
22
3.9
22
69
14
68
47
8
11
32
1.70
13721245--13721711
22
21.4
22
72
5
194
46
7
9
37
1.63
13721949--13722226
22
12.8
22
70
10
126
46
6
11
35
1.65
13720776--13722226
716
2.0
717
97
0
2715
45
8
9
36
1.67
13724276--13724324
22
2.2
22
85
0
62
51
6
4
38
1.46
13724338--13724398
22
2.8
22
73
9
61
52
4
1
40
1.33
13724383--13724425
22
2.0
22
86
9
61
44
9
4
41
1.57
13724432--13724560
22
5.9
22
73
10
93
47
6
10
36
1.62
13724844--13725015
21
8.1
21
65
6
78
47
8
9
34
1.65
13725116--13725170
3
18.3
3
100
0
110
32
0
0
67
0.91
13736429--13736573
52
2.8
52
87
2
184
26
26
8
39
1.84
13736610--13736652
22
2.0
22
90
0
68
48
27
0
23
1.51
13736623--13736652
11
2.7
11
89
0
51
46
26
0
26
1.53
13736910--13737011
25
4.1
24
79
9
98
21
31
5
41
1.77
13737543--13737699
52
3.0
53
82
3
194
26
24
8
40
1.84
13737724--13737766
22
2.0
22
90
0
68
48
27
0
23
1.51
13737737--13737766
11
2.7
11
89
0
51
46
26
0
26
1.53
13738450--13738510
25
2.5
25
81
5
63
40
8
32
18
1.80
13738774--13738815
11
3.8
11
93
0
75
21
0
28
50
1.49
13738773--13738815
22
2.0
22
100
0
86
23
0
27
48
1.51
13738840--13738995
52
3.0
51
85
1
204
39
8
26
26
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13739869--13739910
11
3.8
11
93
0
75
21
0
28
50
1.49
13739868--13739910
22
2.0
22
100
0
86
23
0
27
48
1.51
13739935--13740090
52
3.0
51
85
1
204
39
8
26
26
1.84
13740974--13741009
18
1.9
18
88
5
54
33
2
0
63
1.08
13742899--13742931
17
2.0
17
88
5
50
48
12
12
27
1.76
13745473--13745605
60
2.3
59
81
12
150
29
9
11
50
1.69
13745533--13745731
72
2.7
71
79
9
220
32
9
9
49
1.65
13745929--13745975
3
14.3
3
86
8
58
65
2
0
31
1.04
13745925--13745975
15
3.1
16
83
16
68
66
1
0
31
1.03
13748166--13748389
42
5.4
42
85
5
278
42
21
11
24
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147