genome.fa.s445.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  99  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18177717--18177758	20	2.1	20	86	8	59	30	30	7	30	1.84
18177720--18177770	7	7.6	7	78	8	52	37	31	3	27	1.75
18177720--18177781	26	2.4	26	81	5	63	40	32	3	24	1.71
18181784--18181833	20	2.5	21	75	12	52	28	10	16	46	1.78
18182987--18183025	19	2.1	19	100	0	78	51	10	0	38	1.36
18183443--18183481	18	2.2	18	90	0	60	48	10	15	25	1.76
18183549--18183760	7	31.7	7	69	12	106	19	2	33	45	1.63
18183539--18183756	20	11.0	19	69	18	92	19	2	32	44	1.65
18186825--18186982	55	2.8	55	79	4	147	43	24	13	19	1.87
18187020--18187118	33	3.0	33	77	5	110	41	14	14	30	1.85
18187024--18187133	33	3.3	33	74	3	96	42	16	12	28	1.84
18187965--18188146	87	2.1	87	96	1	339	39	15	12	32	1.85
18189783--18189821	10	3.9	10	86	0	51	0	25	0	74	0.82
18189783--18189821	20	1.9	20	89	5	60	0	25	0	74	0.82
18190951--18190980	15	2.0	15	93	0	51	0	16	0	83	0.65
18193910--18194012	37	2.8	37	85	5	131	38	11	19	30	1.87
18193916--18194040	37	3.4	36	85	7	130	35	12	20	32	1.89
18193972--18194081	39	2.9	37	80	7	98	30	9	24	35	1.87
18195080--18195134	25	2.2	25	93	0	92	52	7	12	27	1.65
18195822--18195875	14	3.8	14	87	4	81	0	14	0	85	0.61
18195822--18195875	7	7.4	8	72	19	55	0	14	0	85	0.61
18195822--18195876	15	3.8	15	84	13	71	0	14	0	85	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18196239--18196273	18	1.9	18	88	0	52	45	11	14	28	1.79
18196344--18196444	7	14.9	7	78	10	93	18	0	35	44	1.57
18196346--18196423	27	3.0	26	88	3	111	19	1	33	46	1.58
18196434--18196481	13	3.8	13	80	2	53	22	4	22	50	1.67
18197045--18197107	26	2.4	26	91	0	99	50	17	14	17	1.78
18198796--18198844	20	2.5	20	79	0	53	24	14	16	44	1.84
18201419--18201443	13	1.9	13	100	0	50	64	8	0	28	1.22
18202765--18202809	14	2.8	17	78	21	53	46	0	0	53	1.00
18202981--18203006	13	2.0	13	100	0	52	46	7	7	38	1.61
18204027--18204209	97	1.9	97	86	2	260	27	14	20	37	1.92
18204538--18204596	20	2.9	19	85	7	64	28	6	23	40	1.80
18204541--18204592	20	2.5	20	87	9	70	26	5	25	42	1.77
18204541--18204596	21	2.8	19	89	8	76	26	7	23	42	1.79
18208247--18208404	54	2.9	54	73	5	158	28	13	6	51	1.66
18209568--18209868	41	7.2	42	84	4	340	45	14	16	23	1.84
18209568--18209865	84	3.5	84	85	2	368	44	14	17	23	1.85
18209819--18209924	56	1.9	56	94	0	185	49	12	16	22	1.78
18209875--18209970	41	2.3	42	87	3	133	45	13	18	21	1.84
18210444--18210517	21	3.5	21	79	1	76	36	17	10	35	1.85
18211642--18211682	15	2.7	15	88	7	57	9	24	0	65	1.22
18211682--18211722	14	2.8	14	88	7	55	14	14	0	70	1.16
18215741--18215930	55	3.6	50	72	14	148	29	14	7	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18215779--18215942	53	3.0	53	71	7	150	28	13	6	52	1.64
18218109--18218138	15	2.0	15	100	0	60	33	13	20	33	1.91
18231206--18231243	2	19.0	2	100	0	76	50	0	0	50	1.00
18231618--18231651	15	2.4	14	85	5	50	85	0	14	0	0.60
18231619--18231651	14	2.4	14	85	14	50	84	0	15	0	0.61
18236748--18236792	9	5.3	9	76	15	51	26	0	2	71	0.98
18236741--18236791	24	2.1	24	92	0	84	23	1	3	70	1.14
18236751--18236790	15	2.6	16	84	11	57	25	0	2	72	0.97
18237061--18237115	28	2.0	28	85	0	74	67	1	1	29	1.11
18239680--18239729	13	3.9	13	76	5	57	54	40	0	6	1.25
18239672--18239736	25	2.5	26	87	5	96	50	44	0	4	1.22
18245013--18245083	25	2.7	25	80	6	79	16	33	21	28	1.95
18245113--18245173	3	20.7	3	89	3	88	32	1	1	63	1.13
18245259--18245301	11	4.2	10	82	14	52	0	20	0	79	0.74
18245259--18245301	5	8.4	5	80	14	52	0	20	0	79	0.74
18245259--18245313	15	3.4	16	85	7	76	0	23	0	76	0.79
18245260--18245310	20	2.6	20	79	14	61	0	23	0	76	0.79
18246164--18246208	13	3.4	13	82	11	56	8	2	6	82	0.93
18246164--18246209	14	3.4	14	82	17	53	8	2	8	80	0.99
18252573--18252610	19	2.0	19	85	10	51	57	13	18	10	1.63
18257350--18257667	114	2.8	114	80	0	287	26	27	12	34	1.92
18257735--18258002	114	2.4	114	86	0	356	25	26	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18258339--18258449	3	38.0	3	74	10	70	28	5	2	63	1.31
18258425--18258471	12	3.5	13	88	8	60	19	0	0	80	0.70
18258443--18258483	21	2.0	21	90	4	66	7	4	0	87	0.65
18258457--18258501	17	2.7	16	80	10	54	4	11	2	82	0.91
18258872--18258920	21	2.3	21	86	6	64	42	10	18	28	1.83
18259336--18259386	6	8.7	6	91	4	86	15	1	0	82	0.76
18259330--18259378	23	2.1	23	92	0	80	14	8	0	77	0.98
18259339--18259386	17	2.7	18	90	6	80	16	2	0	81	0.79
18259336--18259385	23	2.2	23	96	0	91	16	2	0	82	0.77
18261392--18261424	16	1.9	18	88	11	52	72	9	3	15	1.21
18263238--18263291	20	2.8	20	86	8	67	51	33	5	9	1.57
18264285--18264309	9	2.8	9	100	0	50	72	0	8	20	1.10
18264892--18264963	13	5.7	12	77	16	58	83	1	11	4	0.85
18264918--18264958	12	3.3	13	83	16	52	82	0	9	7	0.83
18264893--18264964	23	3.2	22	78	7	74	83	1	11	4	0.85
18264892--18264964	17	4.2	16	77	19	67	83	1	10	4	0.84
18273775--18273820	19	2.4	19	92	0	74	28	8	43	19	1.80
18278231--18278291	30	2.0	30	96	0	113	44	8	18	29	1.78
18283644--18283702	7	8.7	7	75	20	54	49	37	0	13	1.43
18283651--18283705	20	2.8	20	100	0	110	52	34	0	12	1.40
18284015--18284068	20	2.8	20	86	8	67	51	33	5	9	1.57
18285671--18285719	20	2.5	18	78	18	53	83	2	8	6	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18285670--18285736	21	3.2	21	81	10	75	82	1	10	5	0.91
18285669--18285731	33	1.9	33	81	12	76	79	1	11	7	1.00
18293173--18293205	16	2.1	16	100	0	66	24	18	30	27	1.98
18298984--18299044	30	2.0	30	96	0	113	44	8	18	29	1.78
18303002--18303041	21	2.0	21	85	5	55	37	12	20	30	1.89
18305992--18306032	21	1.9	22	90	5	66	73	2	17	7	1.17
18306978--18307347	144	2.6	144	77	10	328	33	12	11	42	1.80
18308855--18308914	19	3.2	19	83	4	77	53	30	1	15	1.51
18308900--18308950	27	2.0	25	84	7	66	52	35	3	7	1.49
18309018--18309155	39	3.4	39	70	19	109	52	36	2	8	1.47
18309008--18309201	84	2.3	84	86	6	268	51	38	2	7	1.45
18311120--18311175	23	2.4	24	82	8	62	75	5	12	7	1.18
18311753--18311806	24	2.3	23	75	9	56	35	3	0	61	1.14
18311938--18312118	99	1.8	100	81	4	231	39	14	8	36	1.78
18313115--18313154	4	10.2	4	83	5	55	25	5	0	70	1.08
18321993--18322020	14	2.0	14	100	0	56	21	28	7	42	1.79
18324045--18324493	208	2.2	208	78	5	453	44	14	20	20	1.86
18325780--18326076	88	3.4	88	84	3	393	34	17	14	32	1.91
18326038--18326119	33	2.5	33	85	0	119	28	26	15	29	1.96
18326853--18326915	26	2.5	25	84	2	81	31	15	15	36	1.90
18326881--18327197	41	8.2	41	72	15	282	33	13	18	34	1.90
18326967--18327178	72	2.9	73	88	3	295	33	11	17	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18327156--18327258	37	2.8	37	81	8	113	27	13	21	37	1.91
18327263--18327859	33	18.3	33	71	10	323	28	16	20	34	1.94
18327283--18327925	64	9.9	64	78	6	549	29	16	20	33	1.94
18327283--18327789	193	2.6	196	81	5	537	28	16	20	34	1.94
18327420--18327859	98	4.5	99	74	11	248	30	16	19	34	1.93
18327284--18327925	131	4.9	130	80	5	627	29	16	19	33	1.94
18328762--18328800	20	2.0	20	85	10	53	5	20	0	74	1.01
18328762--18328812	16	3.2	16	85	0	66	3	17	0	78	0.90
18328782--18328832	24	2.1	25	89	7	79	1	11	3	82	0.89
18328802--18328839	20	1.9	20	94	0	67	0	10	7	81	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147