genome.fa.s445.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  19  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4109207--4109263	28	2.0	28	83	12	73	56	0	3	40	1.17
4110070--4110109	16	2.5	16	87	0	53	35	0	35	30	1.58
4110082--4110121	20	2.0	21	90	5	64	37	0	35	27	1.57
4110130--4110210	29	2.6	30	75	13	76	51	0	2	45	1.14
4110188--4110226	17	2.3	17	86	0	51	64	0	2	33	1.08
4113920--4113952	16	2.2	15	89	10	50	87	6	3	3	0.71
4114547--4114585	20	2.0	20	89	0	60	56	5	7	30	1.49
4119610--4119642	2	16.5	2	100	0	66	48	0	0	51	1.00
4124609--4124802	103	1.9	103	94	0	343	31	26	13	28	1.94
4125533--4125570	12	3.1	13	88	7	53	21	26	10	42	1.85
4131013--4131059	11	4.5	10	78	19	51	78	0	2	19	0.85
4131013--4131059	21	2.2	21	88	7	69	78	0	2	19	0.85
4132049--4132099	17	3.2	16	72	16	52	72	0	5	21	1.05
4133522--4133556	17	2.1	17	94	0	61	22	22	17	37	1.94
4137977--4138035	27	2.2	27	82	8	77	61	3	3	32	1.29
4138924--4138983	25	2.4	25	88	5	95	20	15	15	50	1.79
4150411--4150457	17	2.8	17	80	0	58	42	17	4	36	1.68
4161309--4161530	124	1.8	122	91	3	365	45	5	9	40	1.60
4172856--4172940	34	2.5	34	74	0	89	37	10	10	41	1.74
4178037--4178080	21	2.1	21	86	0	61	38	25	9	27	1.86
4180832--4181097	124	2.1	124	82	5	306	36	12	10	41	1.76
4181065--4181349	149	1.9	146	83	3	365	36	12	12	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4181227--4181678	186	2.4	186	82	5	520	34	11	11	42	1.76
4180927--4181546	333	1.9	327	83	4	764	35	11	11	41	1.77
4184040--4184117	38	2.1	38	90	0	120	33	30	6	29	1.83
4184141--4184193	23	2.2	25	83	6	65	49	18	11	20	1.78
4184721--4184782	16	3.8	16	72	10	54	38	12	14	33	1.84
4189686--4189807	28	4.7	25	80	8	104	22	5	27	44	1.75
4189763--4189807	12	3.7	12	88	5	72	17	6	33	42	1.76
4189763--4189816	25	2.2	25	100	0	108	18	7	31	42	1.78
4193126--4194036	305	3.0	302	82	4	1001	36	14	14	35	1.86
4196512--4196559	24	2.0	24	83	0	60	22	2	2	72	1.05
4198910--4199169	83	3.1	83	81	6	269	26	13	20	40	1.89
4200221--4200272	25	2.2	23	82	6	59	23	5	1	69	1.20
4200280--4200313	16	2.1	16	88	0	50	58	0	0	41	0.98
4206694--4206744	23	2.3	21	80	6	57	56	17	3	21	1.57
4207390--4207520	24	5.7	23	68	14	90	57	12	4	25	1.54
4207386--4207434	11	4.4	11	80	12	55	59	10	2	28	1.41
4207629--4207674	17	2.7	18	78	18	53	80	0	2	17	0.81
4207637--4207674	18	2.1	18	85	9	51	81	0	2	15	0.80
4208558--4208603	22	2.0	23	83	4	58	76	2	2	19	1.00
4209582--4209627	20	2.4	20	82	7	60	19	2	0	78	0.86
4209582--4209627	6	7.3	6	81	18	58	19	2	0	78	0.86
4209702--4209731	6	5.0	6	95	0	51	30	16	3	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4210111--4210145	15	2.3	15	90	0	52	22	5	8	62	1.45
4211265--4211354	44	2.0	44	100	0	180	36	20	4	38	1.72
4220360--4220443	6	13.3	6	75	14	71	78	2	1	17	0.92
4220360--4220438	19	4.1	19	85	3	88	79	2	1	16	0.90
4220360--4220443	32	2.7	30	83	9	98	78	2	1	17	0.92
4220647--4220690	1	44.0	1	81	0	52	0	2	6	90	0.51
4220649--4220691	17	2.4	18	92	3	70	0	2	9	88	0.60
4220647--4220690	22	2.1	20	91	8	70	0	2	6	90	0.51
4220723--4221291	42	13.6	42	85	2	718	42	14	17	25	1.88
4220723--4221291	83	6.8	83	87	2	728	42	14	17	25	1.88
4220723--4221291	125	4.5	125	86	3	770	42	14	17	25	1.88
4221261--4221319	28	2.1	28	87	0	82	55	6	13	23	1.62
4221219--4221353	69	1.9	70	86	1	191	48	11	14	26	1.77
4233150--4233193	9	5.4	8	84	12	54	13	2	9	75	1.14
4233150--4233193	17	2.6	17	86	10	56	13	2	9	75	1.14
4233701--4233739	15	2.7	14	80	7	51	0	38	0	61	0.96
4234109--4234166	19	3.1	19	97	0	107	31	29	5	34	1.79
4234237--4234310	19	3.7	20	72	15	64	72	2	2	21	1.09
4234229--4234316	40	2.4	34	80	12	95	73	2	2	21	1.05
4234227--4234311	12	7.4	11	72	17	66	75	2	2	20	1.03
4234227--4234324	17	5.8	16	71	20	65	73	3	2	21	1.07
4235832--4235862	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4239680--4239724	16	2.9	16	80	3	56	44	4	8	42	1.56
4240345--4240383	15	2.7	15	92	4	62	79	0	7	12	0.93
4241231--4241283	22	2.5	20	82	11	54	43	7	11	37	1.69
4241359--4241603	18	13.4	18	72	13	110	48	11	12	27	1.75
4241568--4241615	10	5.1	9	78	16	53	60	12	2	25	1.43
4241576--4241638	8	7.2	8	77	13	54	53	14	3	28	1.56
4241568--4241615	18	2.5	19	81	15	55	60	12	2	25	1.43
4241622--4241798	44	4.0	43	73	11	151	42	14	7	35	1.74
4241627--4241801	89	2.0	89	82	8	214	42	13	8	35	1.74
4241895--4241992	23	4.5	22	70	12	67	47	13	5	33	1.64
4242046--4242094	23	2.1	22	79	17	55	38	16	8	36	1.78
4242052--4242100	23	2.1	23	92	7	82	42	12	10	34	1.76
4242074--4242189	44	2.6	44	87	5	153	45	12	6	35	1.67
4243551--4243641	16	5.4	16	71	19	53	7	18	1	72	1.14
4243549--4243653	44	2.3	44	73	16	99	9	20	1	68	1.27
4243575--4243615	21	2.0	21	90	0	64	7	17	2	73	1.17
4243565--4243638	12	5.8	12	70	20	53	5	17	1	75	1.06
4244662--4245299	139	4.8	138	78	9	651	50	13	8	26	1.71
4244975--4245006	14	2.3	14	94	0	55	53	12	6	28	1.62
4244856--4245236	123	3.0	122	82	6	469	51	14	8	25	1.70
4245972--4246095	45	2.8	44	79	9	135	57	11	6	25	1.57
4247174--4247214	18	2.4	16	84	8	55	60	4	0	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4247177--4247213	17	2.1	17	90	5	56	56	5	0	37	1.22
4261426--4261465	21	2.0	20	90	5	62	30	5	5	60	1.40
4266236--4266278	18	2.4	18	96	0	77	39	9	34	16	1.80
4267894--4267960	22	3.0	22	76	4	71	28	23	17	29	1.97
4268060--4268120	32	1.9	32	86	0	86	37	26	16	19	1.93
4268127--4268378	118	2.1	118	82	7	305	36	18	12	32	1.88
4268327--4268378	22	2.4	22	86	0	77	36	25	9	28	1.87
4268327--4268387	22	2.8	22	82	5	61	37	22	9	29	1.87
4268127--4268444	118	2.7	118	79	7	299	36	16	12	34	1.87
4268821--4268862	18	2.4	16	85	14	57	11	4	7	76	1.15
4270727--4270761	3	11.7	3	100	0	70	68	0	0	31	0.90
4275685--4275787	50	2.0	51	83	7	129	47	5	18	28	1.71
4276888--4276927	20	2.0	21	85	5	55	45	0	0	55	0.99
4279257--4279302	18	2.8	16	87	12	74	60	0	4	34	1.16
4279819--4280116	155	1.9	155	84	6	399	50	9	6	33	1.61
4280304--4280424	62	2.0	62	100	0	242	30	14	9	45	1.76
4281215--4281273	27	2.1	28	84	9	77	44	0	0	55	0.99
4281215--4281273	28	2.1	27	82	14	68	44	0	0	55	0.99
4281832--4281856	10	2.5	10	100	0	50	36	20	0	44	1.52
4283137--4283196	31	1.9	31	89	0	93	33	10	6	50	1.62
4283592--4283616	13	1.9	13	100	0	50	76	0	0	24	0.80
4283679--4283768	32	2.9	31	80	14	89	50	1	0	48	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4284127--4284174	18	2.6	19	80	12	55	58	2	0	39	1.10
4284225--4284448	115	2.0	114	93	0	385	46	10	2	40	1.52
4285239--4285268	15	2.0	15	93	0	51	60	16	6	16	1.56
4285839--4285880	15	2.6	17	82	17	54	42	4	4	47	1.45
4285909--4285946	2	19.0	2	100	0	76	50	0	0	50	1.00
4285932--4286230	149	2.0	149	95	1	537	34	12	19	33	1.90
4286560--4286646	16	5.5	16	73	2	59	42	9	6	41	1.63
4286770--4286819	26	1.9	26	87	0	73	50	6	2	42	1.38
4288036--4288105	2	38.5	2	78	18	82	44	1	0	54	1.09
4288036--4288105	17	3.8	20	78	19	82	44	1	0	54	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147