genome.fa.s445.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  74  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13878826--13879082	67	3.9	67	79	7	242	25	10	7	56	1.60
13879738--13879793	4	14.0	4	88	0	85	28	0	19	51	1.47
13889624--13889653	14	2.1	14	100	0	60	36	6	13	43	1.70
13890101--13890162	15	4.1	15	80	10	63	30	3	0	66	1.08
13890123--13890217	24	3.9	24	77	14	97	35	5	1	57	1.28
13890132--13890254	44	2.8	42	77	14	122	34	5	1	58	1.31
13890125--13890254	48	2.8	45	78	14	131	33	5	1	59	1.30
13891035--13891068	5	6.4	5	93	6	50	17	0	0	82	0.67
13891038--13891069	6	5.7	6	89	10	50	15	0	0	84	0.63
13891035--13891069	11	3.2	11	88	11	54	17	0	0	82	0.66
13891118--13891210	30	3.2	30	62	32	74	40	7	13	37	1.74
13891094--13891254	58	2.7	58	90	1	259	44	6	12	36	1.69
13891094--13891254	59	2.7	58	92	1	259	44	6	12	36	1.69
13892988--13893022	15	2.3	15	90	0	52	22	5	2	68	1.24
13892995--13893137	4	35.8	4	66	15	55	28	3	3	64	1.26
13894005--13894058	6	9.7	6	75	15	53	12	1	1	83	0.81
13894007--13894063	26	2.2	26	87	9	80	14	3	1	80	0.92
13894076--13894533	59	7.7	58	83	7	537	42	7	12	37	1.71
13904977--13905101	11	11.9	11	84	11	133	80	0	11	8	0.92
13904977--13905101	21	6.0	21	82	15	152	80	0	11	8	0.92
13904975--13905095	32	3.4	36	77	14	133	78	0	11	9	0.96
13904977--13905101	39	3.0	43	81	14	138	80	0	11	8	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13904995--13905047	8	6.8	8	83	16	67	77	0	11	11	1.00
13904993--13905114	11	10.4	12	82	12	107	77	0	13	9	1.00
13906091--13906298	44	4.9	40	81	9	132	25	17	19	37	1.93
13906171--13906319	44	3.4	44	93	0	244	21	16	18	42	1.89
13906130--13906320	88	2.2	85	84	6	249	24	17	17	40	1.90
13906293--13906348	28	2.0	28	89	0	85	25	16	17	41	1.89
13906251--13906391	72	2.0	72	91	0	228	24	16	18	41	1.90
13906341--13906448	44	2.4	46	87	3	157	25	14	20	39	1.90
13906207--13906437	116	2.0	118	91	3	378	23	15	19	41	1.89
13906341--13906459	46	2.7	44	88	2	166	25	14	22	37	1.92
13906709--13906743	15	2.3	15	90	0	52	22	5	2	68	1.24
13906716--13906880	4	41.8	4	66	16	58	28	3	3	64	1.25
13906780--13906822	14	3.0	14	86	10	52	30	2	4	62	1.28
13906725--13906849	18	6.7	18	68	16	58	30	4	4	61	1.32
13907715--13907743	9	3.0	10	90	10	51	31	0	0	68	0.89
13907912--13907947	17	2.1	17	94	0	63	36	11	5	47	1.63
13907929--13908238	59	5.3	56	79	10	300	40	8	12	38	1.73
13908734--13908772	19	2.1	19	90	0	60	71	0	5	23	1.05
13909430--13909974	208	2.6	206	82	4	641	55	9	10	24	1.62
13909940--13910274	176	1.9	177	92	1	566	46	6	10	36	1.64
13910351--13910465	22	5.2	22	78	0	95	46	7	9	35	1.65
13910351--13910466	44	2.6	44	78	2	117	46	8	9	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13910299--13910468	66	2.6	66	80	0	162	46	9	8	35	1.67
13910809--13910859	20	2.5	21	77	3	59	52	15	5	25	1.65
13915339--13915377	12	3.4	12	79	13	55	10	0	23	66	1.22
13915329--13915392	22	3.0	21	80	8	69	12	0	20	67	1.23
13926819--13926843	9	2.8	9	100	0	50	12	0	8	80	0.92
13927241--13927295	25	2.2	25	83	9	67	40	5	5	49	1.49
13928169--13928194	9	2.9	9	100	0	52	69	7	0	23	1.14
13929404--13929459	21	2.5	22	88	5	78	41	5	10	42	1.62
13931560--13931777	63	3.5	64	71	13	211	28	16	18	36	1.92
13931550--13931817	125	2.1	125	95	0	482	28	15	20	34	1.94
13931631--13931817	62	3.0	63	69	13	188	29	16	22	31	1.96
13932289--13932336	20	2.3	21	80	16	55	37	10	10	41	1.74
13935490--13935740	80	3.1	80	81	5	326	42	24	9	23	1.84
13936629--13937066	146	3.0	144	86	3	617	39	8	14	36	1.77
13945259--13945325	33	2.0	33	85	5	91	35	19	13	31	1.90
13945521--13945555	17	1.9	19	88	11	56	62	0	0	37	0.95
13956405--13956444	13	3.1	13	86	10	55	77	2	2	17	0.99
13958446--13958577	63	2.1	63	98	1	257	25	6	30	37	1.82
13958739--13958786	25	1.9	25	83	8	62	66	0	31	2	1.03
13968132--13968217	28	3.0	28	77	11	95	66	10	2	20	1.33
13968213--13968247	9	3.8	9	88	3	52	68	0	0	31	0.90
13968242--13968307	10	6.4	11	69	13	59	40	4	1	53	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13968253--13968320	20	3.4	21	78	15	81	42	4	1	51	1.31
13968233--13968297	30	2.2	30	83	5	78	44	4	1	49	1.32
13968397--13968480	29	2.9	29	76	15	93	36	1	5	55	1.32
13968392--13968568	28	6.2	28	70	16	105	35	2	4	58	1.31
13968457--13968531	18	4.1	18	79	6	64	40	2	2	54	1.28
13968578--13968688	39	2.8	39	77	12	118	43	1	4	50	1.33
13968401--13968699	10	30.6	10	69	17	64	38	2	4	55	1.32
13968714--13968757	20	2.2	20	84	4	54	27	4	4	63	1.33
13969617--13969646	15	1.9	16	93	6	53	40	3	6	50	1.45
13969613--13969649	16	2.4	17	82	17	53	45	2	5	45	1.40
13969680--13969728	14	3.6	14	79	17	59	30	2	8	59	1.38
13969687--13969742	26	2.2	27	84	9	73	35	1	7	55	1.38
13970614--13970653	14	3.1	14	72	20	50	32	0	0	67	0.91
13971085--13971116	12	2.6	13	90	9	50	21	0	6	71	1.07
13971103--13971154	20	2.5	21	78	12	54	36	1	1	59	1.19
13972423--13972481	26	2.4	25	81	13	68	57	0	3	38	1.15
13973765--13973815	16	3.3	15	78	15	50	23	1	21	52	1.57
13973774--13973815	15	2.7	16	92	3	68	21	0	23	54	1.44
13973840--13973888	23	2.2	22	88	3	71	8	2	28	61	1.36
13974344--13974413	36	1.9	36	82	5	88	44	12	20	22	1.85
13974420--13974492	36	2.0	36	86	0	101	42	13	21	21	1.88
13974481--13974716	88	2.7	88	74	3	242	41	16	19	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13974749--13974792	22	2.0	21	91	4	70	40	9	22	27	1.84
13974662--13974995	110	3.0	110	80	1	393	38	14	22	23	1.92
13975289--13975393	41	2.6	41	80	8	124	32	16	15	36	1.90
13975946--13976094	33	4.5	33	74	1	138	34	17	18	28	1.94
13975943--13976094	65	2.3	66	88	1	243	35	17	18	28	1.94
13975954--13976239	152	1.9	150	86	2	412	32	17	19	30	1.95
13976116--13976245	32	4.1	32	77	6	129	30	17	19	33	1.95
13977098--13977155	21	2.8	21	80	17	68	5	18	0	75	0.98
13977106--13977160	20	2.9	19	80	19	62	3	20	0	76	0.94
13978317--13978351	18	1.9	18	94	0	61	2	14	0	82	0.77
13978318--13978360	18	2.4	18	88	0	59	4	9	0	86	0.71
13981939--13981970	17	1.9	17	93	6	57	28	0	25	46	1.53
13982437--13982488	18	2.8	19	75	21	56	71	5	0	23	1.07
13984143--13984214	36	2.0	36	86	7	103	47	12	20	19	1.82
13984270--13984419	35	4.1	35	70	11	106	44	19	21	15	1.87
13984157--13984573	108	3.9	108	78	4	321	45	16	20	18	1.86
13984363--13984787	180	2.4	181	84	4	504	46	16	18	19	1.85
13984543--13984873	108	3.1	108	80	3	382	48	15	16	18	1.81
13984474--13984873	36	11.1	34	65	9	111	48	16	16	18	1.81
13984274--13984847	288	2.0	287	80	5	649	46	16	18	18	1.85
13986595--13986741	63	2.3	65	84	5	183	48	7	7	36	1.59
13986618--13986748	22	6.1	22	72	10	83	49	7	9	33	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13986595--13986793	66	3.1	66	81	3	181	48	8	7	35	1.61
13986636--13986944	22	14.2	22	68	8	96	49	7	9	34	1.62
13986860--13986957	43	2.2	44	82	5	128	52	4	8	35	1.50
13986636--13986957	44	7.4	44	75	6	192	49	6	9	35	1.61
13986948--13986999	22	2.3	23	74	9	54	36	1	19	42	1.62
13987023--13987064	22	1.9	22	90	0	66	50	2	14	33	1.56
13987033--13987097	32	2.0	32	100	0	130	49	3	15	32	1.60
13987007--13987170	54	3.0	54	83	7	143	49	3	12	34	1.59
13987067--13987112	22	2.1	22	87	0	65	50	2	13	34	1.53
13987073--13987194	58	2.1	58	98	0	235	49	4	12	34	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147