genome.fa.s445.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  102  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18691135--18691283	62	2.4	64	82	6	162	32	12	16	38	1.86
18691324--18691407	33	2.5	33	84	7	116	38	11	11	38	1.79
18691240--18691433	94	2.1	92	81	5	221	34	12	15	37	1.86
18691378--18691433	28	2.0	28	92	0	94	39	12	16	32	1.85
18696268--18696308	17	2.4	18	80	19	52	21	14	31	31	1.94
18698939--18698982	18	2.7	16	82	10	54	27	2	0	70	0.99
18700455--18700506	22	2.4	21	78	9	59	5	21	5	67	1.33
18701866--18701924	24	2.5	22	78	10	64	5	22	8	64	1.41
18702848--18702894	25	1.9	24	86	4	67	31	0	0	68	0.90
18702888--18702944	16	3.3	17	83	14	64	22	1	1	73	1.02
18703376--18703426	8	6.4	8	82	8	68	9	0	5	84	0.78
18703376--18703426	25	2.1	23	85	7	66	9	0	5	84	0.78
18703697--18703912	33	6.8	33	71	12	157	29	13	18	37	1.89
18703697--18703977	32	8.8	32	71	15	163	30	13	18	37	1.89
18703700--18703969	93	2.8	95	78	13	254	30	12	18	37	1.89
18703698--18703994	157	1.9	157	79	12	333	30	13	18	37	1.89
18705014--18705046	4	8.2	4	87	12	50	0	27	0	72	0.85
18704990--18705066	22	3.5	21	74	20	61	2	23	0	74	0.95
18704990--18705072	8	11.1	7	75	18	53	2	22	1	73	1.02
18707945--18708005	17	3.6	17	77	6	70	29	8	4	57	1.49
18707951--18707998	16	2.9	16	75	6	51	27	10	6	56	1.57
18710986--18711021	16	2.2	16	90	9	56	63	2	13	19	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18712549--18712602	16	3.1	18	71	13	58	25	3	7	62	1.38
18712640--18712700	17	3.6	17	77	6	70	29	8	6	55	1.54
18712646--18712693	16	2.9	16	75	6	51	27	10	8	54	1.63
18712639--18712712	33	2.2	35	87	4	107	31	9	6	52	1.60
18712673--18712718	18	2.6	18	86	6	58	32	4	4	58	1.37
18713058--18713116	28	2.1	28	84	12	77	6	20	0	72	1.06
18713065--18713104	21	2.0	20	90	5	62	7	17	0	75	1.03
18716853--18716884	15	2.1	15	94	0	55	15	40	0	43	1.47
18718134--18718686	203	2.7	202	80	4	576	42	11	12	34	1.77
18718517--18718871	179	2.0	181	83	5	459	41	10	12	34	1.77
18721977--18722065	39	2.3	39	80	0	97	20	16	25	37	1.93
18723477--18724247	235	3.3	236	84	4	984	45	11	8	33	1.71
18725124--18725178	16	3.3	16	78	14	58	30	14	0	54	1.41
18732024--18732076	23	2.3	23	82	17	67	15	7	16	60	1.57
18732093--18732170	19	4.3	18	72	18	63	30	1	0	67	0.98
18735640--18735666	3	9.0	3	100	0	54	66	0	0	33	0.92
18737376--18737445	7	9.7	7	75	10	61	1	1	17	80	0.87
18737569--18738079	35	14.7	35	70	11	183	47	15	18	17	1.82
18737541--18738079	105	5.1	105	73	4	273	48	15	18	17	1.82
18739024--18739068	9	4.6	10	81	13	58	13	2	6	77	1.05
18739015--18739066	9	5.7	9	76	10	52	9	1	9	78	1.03
18747706--18747763	26	2.2	27	84	3	73	62	6	3	27	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18748880--18748925	19	2.4	19	88	0	65	19	10	28	41	1.85
18748950--18748992	13	3.2	13	80	3	50	23	6	23	46	1.76
18749524--18749576	5	10.2	5	79	4	52	69	0	5	24	1.09
18750724--18750748	9	2.8	9	100	0	50	0	0	20	80	0.72
18750751--18750802	17	3.1	17	78	13	54	23	7	0	69	1.14
18759655--18759694	16	2.5	16	87	0	53	40	0	20	40	1.52
18760073--18760113	17	2.4	18	76	8	50	24	0	19	56	1.42
18768019--18768694	342	2.0	342	98	0	1309	43	15	10	29	1.81
18769169--18769309	59	2.3	62	84	3	171	30	19	9	39	1.85
18778548--18778632	43	2.0	43	90	0	134	43	12	17	25	1.85
18785293--18785338	23	2.0	23	100	0	92	34	34	8	21	1.84
18786488--18787036	145	3.8	145	77	8	535	42	12	13	31	1.81
18794646--18794711	12	5.3	12	77	12	62	21	7	28	42	1.80
18794648--18794717	25	2.8	25	91	0	113	21	7	30	41	1.80
18794660--18794703	13	3.5	13	78	6	54	22	6	27	43	1.78
18801281--18801311	15	2.0	15	93	6	53	70	0	25	3	1.02
18801518--18802448	471	2.0	470	89	2	1435	40	2	10	47	1.51
18805809--18805843	18	1.9	18	94	0	61	37	25	5	31	1.80
18809023--18809057	18	2.0	17	88	5	52	77	8	5	8	1.13
18812831--18812954	59	2.1	59	87	3	178	30	11	12	45	1.78
18827976--18828018	20	2.2	20	100	0	86	30	9	13	46	1.75
18833844--18833921	24	3.3	24	71	10	79	39	10	0	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18838146--18838406	129	2.0	130	90	0	416	42	17	9	29	1.81
18843788--18843823	17	2.1	17	90	10	56	47	8	0	44	1.33
18844322--18844435	60	1.9	59	87	3	165	42	4	9	42	1.57
18844533--18844678	56	2.6	56	81	6	154	41	3	13	41	1.60
18845381--18845764	128	3.0	126	80	5	412	44	8	4	42	1.54
18845822--18845867	16	2.9	16	75	18	51	50	8	4	36	1.53
18846098--18846153	9	6.3	9	76	12	62	33	0	1	64	1.04
18846357--18846384	2	14.0	2	100	0	56	50	0	50	0	1.00
18857964--18858006	21	2.2	20	87	8	61	27	2	4	65	1.25
18858433--18858472	22	1.9	20	85	10	53	47	7	0	45	1.31
18858537--18858576	2	20.0	2	94	0	71	52	0	47	0	1.00
18858790--18858834	18	2.5	18	96	0	81	20	0	24	55	1.43
18866083--18866109	2	13.5	2	100	0	54	51	0	0	48	1.00
18867605--18867731	67	1.9	67	88	3	193	41	6	12	39	1.68
18873486--18873711	113	2.0	113	89	0	344	32	14	26	26	1.94
18880059--18880088	15	1.9	16	93	6	53	6	13	13	66	1.43
18882034--18882254	110	2.0	110	100	0	442	34	14	13	37	1.86
18885265--18885310	23	2.0	23	83	8	58	39	0	2	58	1.10
18887052--18887113	29	2.1	29	82	5	72	22	4	0	72	1.03
18887083--18887146	18	3.8	17	75	18	55	28	1	0	70	0.97
18887082--18887149	23	3.0	23	77	12	77	27	1	0	70	0.96
18892214--18892244	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18893872--18893931	24	2.5	24	72	0	57	41	1	5	51	1.33
18894091--18894164	31	2.3	32	80	17	91	33	2	6	56	1.40
18894458--18894491	16	2.2	15	89	5	50	55	17	2	23	1.55
18909886--18909928	11	3.8	11	84	3	59	20	2	2	74	1.04
18912360--18912396	20	1.9	20	88	5	58	35	0	5	59	1.20
18912616--18912664	25	1.9	26	91	4	82	46	2	10	40	1.49
18916435--18916481	19	2.5	19	76	13	53	38	27	8	25	1.85
18917685--18917748	33	1.9	34	90	6	105	1	6	10	81	0.94
18917695--18917760	7	8.2	8	74	15	57	3	3	10	83	0.87
18917720--18917767	22	2.2	22	84	0	60	4	2	10	83	0.87
18917693--18917759	34	2.0	34	83	11	86	2	4	10	82	0.93
18917844--18917974	36	3.7	35	69	10	95	54	16	15	14	1.72
18918323--18918420	32	3.1	31	76	12	99	26	13	19	40	1.88
18918277--18918452	65	2.7	65	78	3	167	28	15	18	36	1.92
18918407--18918654	67	3.8	67	73	13	203	26	19	19	33	1.96
18918599--18918668	31	2.2	33	84	5	90	24	22	21	31	1.98
18918243--18918687	33	13.6	33	65	15	95	26	18	19	35	1.95
18918619--18918699	33	2.4	34	76	17	87	23	22	20	33	1.97
18918853--18918966	35	3.2	35	72	9	95	33	15	14	36	1.88
18919089--18919163	34	2.2	35	87	2	107	32	16	18	33	1.93
18920030--18920097	21	3.3	20	72	10	57	8	23	1	66	1.28
18920564--18920624	9	6.8	9	83	5	54	3	1	9	85	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18920574--18920625	24	2.2	23	80	12	61	3	0	11	84	0.74
18920922--18921080	73	2.2	71	76	8	167	35	13	21	29	1.92
18920931--18921072	73	1.9	73	82	4	176	34	15	21	28	1.94
18921472--18921519	14	3.4	13	81	16	51	2	10	2	85	0.77
18921770--18921805	15	2.4	15	100	0	72	58	5	8	27	1.50
18922591--18922668	39	2.0	39	82	5	95	38	14	24	23	1.91
18923051--18923086	3	12.0	3	87	0	54	33	2	2	61	1.25
18927407--18927446	21	2.0	21	90	9	66	30	0	0	70	0.88
18927407--18927446	20	2.1	18	86	13	53	30	0	0	70	0.88
18927413--18927454	20	2.1	20	82	8	50	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147