genome.fa.s445.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  125  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22520497--22520546	13	3.9	13	75	19	52	56	0	0	44	0.99
22520495--22520561	25	2.9	24	79	20	72	58	0	0	41	0.98
22520562--22520601	2	20.5	2	84	5	55	45	0	0	55	0.99
22521143--22521185	21	2.2	19	83	8	50	48	0	0	51	1.00
22527392--22527425	10	3.2	10	84	15	50	85	0	14	0	0.60
22527959--22527996	20	1.9	20	89	10	60	81	13	2	2	0.90
22528376--22528401	12	2.2	12	100	0	52	50	0	0	50	1.00
22529064--22529093	15	1.9	15	93	6	51	83	13	3	0	0.77
22529206--22529253	22	2.1	23	85	11	64	79	2	10	8	1.02
22529206--22529256	21	2.4	22	83	9	61	80	1	9	7	0.98
22529423--22529457	15	2.4	15	85	4	54	74	0	14	11	1.08
22530108--22530150	14	3.0	14	75	3	50	76	0	2	20	0.89
22530780--22530815	16	2.2	16	95	0	63	41	0	0	58	0.98
22531528--22531574	16	2.9	16	81	6	58	80	2	4	12	0.94
22531757--22531818	11	5.2	12	76	20	51	77	1	19	1	0.94
22531749--22531808	23	2.4	26	76	23	67	78	0	20	1	0.84
22531764--22531818	23	2.4	23	84	6	76	80	1	18	0	0.81
22536260--22536349	26	3.5	26	83	6	119	26	25	20	27	1.99
22536410--22536451	16	2.6	17	88	7	61	33	4	0	61	1.17
22536410--22536452	19	2.3	19	88	8	61	32	4	0	62	1.15
22537314--22537354	6	6.8	6	79	20	50	17	0	2	80	0.82
22537307--22537347	13	3.2	13	83	16	59	14	0	4	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22537307--22537354	25	2.0	24	95	4	87	16	0	4	79	0.89
22537437--22537494	26	2.2	25	84	9	71	68	5	12	13	1.35
22538838--22538932	48	2.0	48	91	0	154	38	13	8	38	1.75
22539126--22539174	24	2.0	24	84	7	64	30	24	18	26	1.98
22546041--22546098	25	2.3	25	88	5	82	20	13	6	58	1.58
22549744--22549774	15	2.1	15	93	0	53	74	3	6	16	1.16
22549943--22549981	20	2.0	20	94	0	69	56	2	15	25	1.52
22553579--22553620	22	2.0	21	90	4	66	66	0	0	33	0.92
22554309--22554369	13	4.7	13	77	15	56	59	0	0	40	0.98
22554339--22554372	6	5.7	6	86	13	52	67	0	0	32	0.91
22554285--22554358	29	2.7	27	80	17	82	52	0	1	45	1.09
22554344--22554387	21	2.1	21	83	8	54	65	2	0	31	1.05
22554339--22554372	11	2.8	12	91	8	52	67	0	0	32	0.91
22554384--22554414	15	2.0	15	93	6	53	80	0	6	12	0.89
22555909--22555944	3	12.0	3	100	0	72	66	0	0	33	0.92
22566136--22566180	22	2.2	20	84	8	54	40	4	4	51	1.42
22566197--22566560	58	6.2	58	82	7	348	46	5	11	35	1.63
22566197--22566842	59	11.1	58	78	11	539	46	5	11	36	1.63
22566412--22566841	164	2.5	164	79	11	438	46	5	10	37	1.62
22566454--22566656	104	2.0	105	82	7	254	45	5	12	36	1.65
22576720--22576971	49	5.1	47	78	6	202	52	12	15	18	1.74
22576715--22576879	52	3.3	52	82	7	187	58	12	11	18	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22577705--22578435	258	2.8	257	83	2	844	23	17	13	46	1.83
22577705--22578506	86	9.3	86	79	3	727	23	17	12	46	1.82
22579575--22579619	22	2.2	20	84	8	54	40	4	4	51	1.42
22579636--22580287	58	11.1	58	81	7	694	45	6	12	36	1.67
22590783--22590821	12	3.2	13	85	10	55	64	0	0	35	0.94
22591046--22591079	13	2.6	13	82	17	52	73	0	2	23	0.97
22593137--22593287	51	3.0	50	85	6	189	39	9	25	25	1.85
22593822--22593927	25	4.2	26	68	11	69	36	9	33	20	1.85
22594209--22594359	51	3.0	50	86	6	198	39	8	25	25	1.84
22594894--22594999	25	4.2	26	68	11	69	36	9	33	20	1.85
22595281--22595431	51	3.0	50	86	6	198	39	8	25	25	1.84
22596934--22596962	2	14.5	2	100	0	58	51	0	0	48	1.00
22600481--22600532	24	2.2	24	86	6	70	17	7	1	73	1.16
22600638--22600678	19	2.2	19	86	0	55	78	4	4	12	1.07
22600943--22600983	18	2.2	18	86	4	55	43	19	12	24	1.85
22601614--22601662	3	16.3	3	100	0	98	67	0	0	32	0.91
22601994--22602587	114	5.2	113	77	7	502	34	13	25	26	1.93
22601994--22602582	228	2.6	227	79	5	616	34	13	25	26	1.93
22602755--22602851	41	2.4	41	82	0	122	32	21	12	32	1.91
22613082--22613106	2	12.5	2	100	0	50	52	0	0	48	1.00
22613750--22613792	22	2.0	21	86	4	59	30	2	2	65	1.18
22613839--22613889	16	2.9	17	80	14	59	11	9	0	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22616329--22616381	23	2.4	22	81	9	63	16	7	3	71	1.24
22616486--22616526	19	2.2	19	86	0	55	78	4	4	12	1.07
22616790--22616830	18	2.2	18	86	4	55	43	19	12	24	1.85
22617461--22617521	3	20.3	3	100	0	122	67	0	0	32	0.91
22617841--22618329	114	4.3	113	76	4	355	35	13	24	26	1.92
22629575--22629620	24	2.0	23	87	8	67	32	2	2	63	1.19
22629667--22629717	16	2.9	17	80	14	59	11	9	0	78	0.97
22630688--22630732	3	15.0	3	100	0	90	66	0	0	33	0.92
22632981--22633020	20	1.9	22	85	10	57	22	7	0	70	1.12
22634290--22634349	13	4.4	14	73	16	54	63	0	0	36	0.95
22634760--22634793	13	2.6	13	82	17	52	23	2	0	73	0.97
22636160--22636244	40	2.1	40	91	0	134	40	12	10	36	1.78
22642534--22642584	13	4.2	13	80	12	54	56	3	0	39	1.18
22643851--22644041	104	1.9	101	85	3	265	35	16	10	37	1.83
22646331--22646372	3	14.0	3	100	0	84	33	0	0	66	0.92
22648040--22648087	24	2.0	23	84	15	62	52	0	0	47	1.00
22648044--22648082	13	3.1	12	82	10	51	51	0	0	48	1.00
22650724--22650765	21	2.0	21	95	0	75	33	7	33	26	1.83
22657543--22657585	12	3.5	12	78	15	52	53	0	0	46	1.00
22657549--22657598	25	2.0	25	88	7	75	50	0	2	48	1.12
22660209--22660250	21	2.0	21	85	0	57	33	9	28	28	1.88
22672131--22672160	15	1.9	16	93	6	53	66	6	0	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22673022--22673061	15	2.6	16	88	4	55	22	2	2	72	1.09
22673379--22673413	3	11.7	3	87	0	52	31	2	2	62	1.24
22673974--22674006	3	11.0	3	100	0	66	66	33	0	0	0.92
22675040--22675090	22	2.2	23	89	6	77	5	23	0	70	1.09
22675044--22675086	17	2.5	17	84	3	59	6	18	0	74	1.04
22676018--22676203	69	2.7	69	79	6	189	48	8	20	22	1.76
22675974--22676202	35	6.6	35	72	8	128	49	9	20	21	1.76
22676086--22676273	70	2.7	70	76	6	175	47	9	20	22	1.78
22688395--22688423	3	9.7	3	100	0	58	34	31	0	34	1.58
22688422--22688459	3	12.7	3	100	0	76	34	0	0	65	0.93
22693495--22693524	15	1.9	16	93	6	53	66	6	0	26	1.16
22694383--22694423	8	5.2	8	80	14	50	24	2	2	70	1.11
22694748--22694782	3	11.7	3	87	0	52	31	2	2	62	1.24
22695361--22695387	3	9.0	3	100	0	54	66	0	0	33	0.92
22696401--22696451	22	2.2	23	89	6	77	5	23	0	70	1.09
22696405--22696447	17	2.5	17	84	3	59	6	18	0	74	1.04
22697472--22697561	35	2.6	35	85	0	126	47	8	23	20	1.77
22697445--22697632	70	2.7	70	76	6	175	47	9	20	22	1.78
22709741--22709781	3	13.7	3	100	0	82	34	31	0	34	1.58
22719400--22719456	24	2.3	24	82	8	71	7	15	1	75	1.10
22719400--22719463	25	2.6	25	78	7	69	7	15	1	75	1.11
22726063--22726197	42	3.2	42	88	4	200	31	11	28	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22729773--22729824	23	2.3	23	83	6	61	48	11	0	40	1.40
22730727--22730852	64	2.0	64	95	0	225	24	11	10	53	1.67
22731526--22731557	16	2.1	16	94	5	57	37	18	0	43	1.51
22737061--22737324	131	2.0	131	96	0	483	34	7	8	50	1.60
22744664--22744702	19	2.1	19	85	0	51	28	7	0	64	1.21
22748451--22748508	21	2.8	21	78	5	55	25	5	25	43	1.75
22752517--22752561	21	2.1	21	84	8	56	48	2	4	44	1.35
22752885--22752932	18	2.7	17	87	9	69	47	2	4	45	1.33
22753671--22753700	16	1.9	15	93	6	51	60	6	0	33	1.23
22757540--22757569	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147