genome.fa.s445.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  22  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4666048--4666097	23	2.2	23	92	0	82	24	0	28	48	1.52
4667216--4667255	19	2.1	19	85	0	53	25	7	27	40	1.82
4670653--4670677	13	1.9	13	100	0	50	80	0	0	20	0.72
4678198--4678235	7	5.6	7	87	3	51	68	2	2	26	1.16
4678218--4678272	23	2.3	24	79	17	62	58	7	3	30	1.43
4678466--4678566	36	2.8	35	79	4	103	28	30	8	31	1.88
4682865--4683224	102	3.6	96	75	14	306	40	8	7	43	1.63
4684431--4684482	22	2.4	22	77	6	52	63	5	3	26	1.34
4685666--4685752	44	2.0	44	84	8	115	29	24	8	37	1.84
4685751--4685825	22	3.4	21	80	12	71	33	13	16	37	1.87
4692134--4692159	2	13.0	2	100	0	52	50	0	0	50	1.00
4698136--4698293	9	19.2	8	68	22	55	27	0	4	67	1.15
4698129--4698182	20	2.7	20	83	13	67	24	0	3	72	1.01
4698202--4698281	23	3.5	23	74	12	67	27	0	5	67	1.11
4698134--4698290	24	7.0	21	67	24	65	28	0	4	66	1.16
4698310--4698381	24	3.1	21	74	18	54	22	5	5	66	1.34
4698828--4698867	20	2.0	20	85	0	53	42	22	15	20	1.88
4699186--4699258	9	8.0	9	78	14	53	10	2	2	83	0.85
4699186--4699252	23	3.0	22	82	6	80	10	1	2	85	0.78
4699270--4699495	60	3.8	59	81	4	267	44	7	12	34	1.72
4699267--4699505	117	2.0	119	87	5	342	43	8	12	35	1.73
4699472--4699515	19	2.3	19	100	0	88	47	13	0	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4699416--4699572	76	2.0	79	88	3	239	43	10	8	36	1.70
4699495--4699624	61	2.2	59	93	5	219	43	11	10	34	1.76
4703487--4703529	11	3.6	12	87	9	61	83	0	13	2	0.74
4703480--4703537	24	2.4	24	82	2	80	75	1	17	5	1.06
4704724--4705019	42	7.1	41	87	6	398	24	16	22	36	1.94
4704724--4705019	84	3.5	82	89	2	439	24	16	22	36	1.94
4705027--4705130	8	12.9	8	85	9	140	87	10	0	1	0.62
4705026--4705122	1	97.0	1	77	0	95	88	9	0	2	0.59
4705027--4705130	17	6.4	16	89	9	140	87	10	0	1	0.62
4705294--4705448	9	18.2	8	72	17	61	26	1	3	68	1.14
4705393--4705448	23	2.6	23	81	15	66	30	0	3	66	1.09
4705465--4705536	24	3.1	21	74	18	54	22	5	5	66	1.34
4706363--4706429	10	6.4	10	72	16	55	11	1	2	83	0.82
4706363--4706428	23	2.9	23	80	10	75	12	1	3	83	0.83
4706443--4706841	60	6.8	58	83	6	480	44	8	12	34	1.72
4706444--4706841	118	3.4	117	85	5	518	44	8	12	34	1.72
4706871--4706900	13	2.4	12	94	5	51	13	0	10	76	1.01
4709503--4709597	22	4.3	22	76	7	75	35	17	11	34	1.86
4709666--4709743	24	3.3	24	77	8	72	44	3	24	26	1.71
4709666--4709743	23	3.3	23	77	10	70	44	3	24	26	1.71
4709803--4709876	22	3.4	21	75	14	69	37	1	21	39	1.62
4711891--4711932	21	2.0	22	86	13	61	38	14	9	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4712124--4712515	103	3.9	98	77	14	358	43	8	8	39	1.65
4712207--4712579	197	1.9	196	81	7	461	44	8	7	38	1.65
4717096--4717149	22	2.4	22	81	12	56	29	3	7	59	1.42
4717132--4717169	7	5.6	7	84	6	51	26	2	2	68	1.16
4719538--4719963	147	2.9	147	95	0	755	33	17	21	27	1.96
4721688--4721792	52	2.0	52	88	3	158	26	23	7	41	1.81
4722473--4722552	12	7.1	12	72	11	62	27	2	7	62	1.35
4722507--4722560	3	18.3	3	76	3	56	31	3	1	62	1.23
4723334--4723409	19	4.1	18	72	11	64	17	5	1	76	1.04
4723342--4723391	24	2.1	24	85	7	66	20	6	2	72	1.16
4723369--4723421	13	4.2	12	76	13	54	20	7	0	71	1.10
4723341--4723429	32	2.9	29	82	14	90	19	6	1	73	1.12
4729032--4729290	121	2.1	121	80	4	290	22	20	11	45	1.82
4729599--4729782	55	3.3	55	80	3	192	22	23	13	39	1.90
4729939--4730061	3	43.3	3	73	13	82	30	4	4	60	1.36
4729961--4730049	44	2.0	44	85	8	119	31	4	4	59	1.37
4729989--4730061	35	2.2	35	82	7	89	30	2	4	63	1.27
4730829--4730902	13	5.8	12	76	16	60	21	1	4	72	1.08
4730830--4730863	12	2.8	12	95	4	59	23	0	0	76	0.79
4730995--4731046	14	3.8	14	76	5	61	84	9	1	3	0.82
4735493--4735536	19	2.3	19	92	4	70	11	13	9	65	1.46
4735700--4735752	1	53.0	1	76	0	52	9	0	1	88	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4735698--4735752	8	7.0	8	91	4	94	10	0	1	87	0.63
4735943--4736273	42	8.0	41	84	5	382	44	19	12	23	1.84
4736609--4736778	79	2.2	79	90	4	263	34	18	11	35	1.86
4736665--4736720	21	2.7	21	88	2	78	33	16	12	37	1.86
4738021--4738162	8	16.4	8	71	17	72	5	14	2	77	1.04
4738071--4738162	9	9.4	9	73	14	67	4	14	1	80	0.92
4738113--4738165	10	6.1	9	77	22	60	9	13	0	77	0.99
4738095--4738119	13	1.9	13	100	0	50	0	8	4	88	0.64
4738519--4738566	24	2.0	23	88	4	69	8	16	0	75	1.04
4743081--4743118	14	2.8	14	84	15	53	10	0	2	86	0.66
4744128--4744156	10	2.7	11	94	5	51	75	0	0	24	0.80
4744309--4744346	2	19.0	2	100	0	76	50	0	0	50	1.00
4746568--4746608	12	3.2	13	76	16	50	36	0	0	63	0.95
4747878--4747942	30	2.2	30	83	5	78	35	9	9	46	1.68
4749978--4750007	15	2.1	15	93	6	53	56	0	0	43	0.99
4751687--4751728	11	3.8	11	87	0	57	19	2	30	47	1.62
4751686--4751728	22	2.0	22	90	0	68	20	2	30	46	1.63
4751753--4751909	52	3.0	52	88	1	217	38	9	26	25	1.86
4752734--4752775	11	3.8	11	87	0	57	19	2	30	47	1.62
4752733--4752775	22	2.0	22	90	0	68	20	2	30	46	1.63
4752800--4752956	52	3.0	52	88	1	217	38	9	26	25	1.86
4766139--4766163	13	1.9	13	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4776765--4776811	12	4.1	12	75	10	53	57	0	2	40	1.11
4777353--4777460	49	2.3	46	84	12	148	29	20	0	49	1.55
4781950--4782108	79	2.0	79	97	0	300	44	19	9	27	1.81
4783428--4783534	44	2.4	44	79	3	115	22	7	12	57	1.59
4787032--4787108	38	2.0	38	87	5	111	29	32	7	29	1.86
4790455--4790496	20	2.0	20	82	13	50	35	16	0	47	1.47
4790653--4790692	21	1.9	21	84	0	53	42	17	5	35	1.71
4799534--4799564	15	2.1	15	93	0	53	48	3	12	35	1.58
4799655--4799697	21	2.0	22	91	8	72	20	25	4	48	1.69
4802700--4802764	24	2.5	26	77	22	66	56	4	4	33	1.40
4805257--4805300	22	2.0	23	90	4	72	47	0	4	47	1.22
4813145--4813193	23	2.1	23	82	14	57	51	0	0	48	1.00
4814785--4814827	19	2.3	19	95	0	77	51	0	0	48	1.00
4814842--4814895	27	2.0	28	82	10	67	46	9	7	37	1.64
4816456--4816494	13	2.9	14	84	7	62	64	0	0	35	0.94
4816989--4817166	94	1.9	94	91	2	295	48	26	2	22	1.64
4824520--4824564	20	2.3	19	81	11	54	31	2	2	64	1.18
4825066--4825104	20	2.0	20	84	0	51	17	7	0	74	1.05
4825539--4825563	6	4.2	6	100	0	50	68	16	0	16	1.22
4825530--4825575	18	2.6	18	77	19	51	71	13	2	13	1.23
4827529--4827604	12	6.5	12	74	21	56	34	0	0	65	0.93
4827545--4827605	16	3.7	16	89	6	95	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4827545--4827603	6	10.7	6	78	10	56	32	0	0	67	0.91
4827593--4827641	18	2.7	19	93	6	84	53	0	0	46	1.00
4827619--4827721	46	2.3	43	76	18	102	47	5	7	38	1.57
4829256--4829289	4	8.2	4	87	6	50	73	0	0	26	0.83
4829251--4829285	17	2.1	17	94	0	61	68	2	0	28	1.04
4829256--4829295	21	1.9	21	89	0	62	72	5	0	22	1.04
4830150--4830182	13	2.6	13	90	4	50	75	0	3	21	0.93
4831693--4831738	21	2.2	21	88	7	67	47	0	13	39	1.42
4832726--4832756	12	2.6	12	89	0	53	51	0	0	48	1.00
4832876--4832998	63	2.0	63	96	1	230	24	14	21	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147