genome.fa.s445.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  27  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5605117--5605168	12	4.5	11	80	9	50	3	15	0	80	0.85
5605118--5605170	21	2.5	21	87	6	72	5	16	0	77	0.96
5605151--5605210	32	1.9	32	83	10	79	10	25	0	65	1.24
5609331--5609395	5	12.8	5	82	12	80	76	0	4	18	0.95
5609331--5609396	11	5.9	11	81	13	73	77	0	4	18	0.94
5609341--5609395	16	3.4	16	87	7	85	76	0	5	18	0.97
5609331--5609395	16	4.3	15	85	11	80	76	0	4	18	0.95
5609373--5609449	4	19.0	4	75	16	54	71	1	0	27	0.94
5610281--5610344	17	3.7	17	84	10	85	62	0	6	31	1.20
5610261--5610345	11	8.3	10	69	20	52	67	1	4	27	1.18
5610368--5610424	25	2.3	25	84	0	69	64	3	1	29	1.20
5610412--5610461	21	2.3	21	83	10	57	74	4	4	18	1.14
5610757--5610801	18	2.6	18	83	13	58	35	6	0	57	1.25
5614085--5614126	15	2.5	17	81	14	52	26	0	2	71	0.98
5614310--5614381	20	3.5	20	73	12	65	36	4	4	55	1.38
5614562--5614631	19	3.6	18	74	12	59	30	0	7	62	1.21
5614561--5614605	20	2.3	19	85	11	56	22	0	8	68	1.16
5613665--5615452	925	1.9	932	81	5	2195	31	11	6	50	1.63
5615532--5615973	223	2.0	221	79	6	473	28	10	6	53	1.61
5621405--5621449	19	2.6	17	83	13	56	57	0	6	35	1.25
5621819--5621848	3	10.0	3	100	0	60	33	0	0	66	0.92
5622096--5622138	20	2.2	19	83	4	50	39	2	9	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5622151--5622209	22	2.7	22	83	0	73	40	6	0	52	1.28
5622256--5622325	22	3.2	22	80	8	79	35	8	5	50	1.57
5622267--5622357	22	4.1	22	79	0	83	37	9	5	47	1.60
5622267--5622357	44	2.1	44	80	0	101	37	9	5	47	1.60
5623135--5623211	21	3.7	21	72	14	70	45	18	9	27	1.79
5623093--5623211	63	1.9	62	82	5	150	42	18	9	30	1.82
5623132--5623224	21	4.5	20	72	10	62	46	17	7	29	1.75
5623398--5623469	21	3.4	21	83	11	101	50	9	6	33	1.62
5623519--5623559	21	2.0	21	90	0	64	41	12	9	36	1.76
5623588--5623765	21	8.6	21	69	10	71	49	10	5	35	1.58
5623565--5623628	34	1.9	32	81	12	76	51	14	3	31	1.57
5623683--5623762	39	2.1	39	100	0	160	53	10	2	33	1.48
5623683--5623741	18	3.1	18	72	13	64	55	10	1	32	1.43
5623868--5623924	21	2.7	22	78	8	73	49	14	3	33	1.60
5623908--5623963	20	2.7	21	81	13	71	44	16	3	35	1.65
5623992--5624046	21	2.6	21	85	0	65	49	7	10	32	1.65
5624082--5624132	27	1.9	26	84	11	68	54	11	5	27	1.59
5624114--5624348	21	11.4	20	66	13	68	45	10	8	35	1.70
5624252--5624359	41	2.6	41	81	8	128	47	12	8	32	1.70
5625038--5625142	53	2.0	52	81	9	124	48	11	7	32	1.67
5625093--5625197	21	5.1	20	74	14	88	49	11	6	32	1.65
5625829--5625911	33	2.7	29	74	20	78	50	1	2	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5625916--5625982	24	2.7	24	73	17	66	34	1	1	62	1.13
5625902--5625985	25	3.4	25	73	15	77	33	2	2	61	1.21
5627106--5627146	21	2.0	20	85	4	55	36	4	0	58	1.20
5635012--5635044	16	2.0	17	94	5	59	33	0	0	66	0.92
5635015--5635062	16	2.7	17	81	12	53	33	0	0	66	0.92
5635024--5635062	20	2.0	20	90	10	62	35	0	0	64	0.94
5635807--5635846	12	3.4	12	89	3	64	55	2	0	42	1.13
5638291--5638322	15	2.2	15	94	5	57	18	0	18	62	1.33
5640454--5640583	30	4.4	30	75	6	122	40	12	0	46	1.47
5640454--5640583	60	2.2	60	81	4	147	40	12	0	46	1.47
5641353--5641413	26	2.4	26	81	10	72	39	13	4	42	1.65
5646657--5646705	15	3.4	14	91	5	71	63	10	0	26	1.26
5646686--5646735	20	2.5	20	86	3	73	62	8	2	28	1.35
5648922--5648946	10	2.5	10	100	0	50	68	0	0	32	0.90
5651796--5651838	23	2.0	22	86	9	61	32	6	9	51	1.61
5652060--5652103	22	2.0	22	100	0	88	36	9	27	27	1.87
5660682--5660725	2	22.0	2	80	0	52	47	6	2	43	1.42
5661663--5661700	2	19.0	2	88	0	58	44	0	5	50	1.24
5662598--5663560	359	2.7	358	83	5	1176	39	11	9	39	1.74
5664948--5664994	20	2.4	19	93	6	85	61	0	0	38	0.96
5670278--5670324	24	2.0	24	100	0	94	44	12	17	25	1.84
5673517--5673670	18	8.3	18	74	13	109	44	1	1	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5673507--5673614	39	2.8	39	85	5	130	41	0	2	54	1.21
5673569--5673625	26	2.1	27	83	3	71	45	1	1	50	1.22
5673520--5673653	42	3.2	41	79	16	123	43	2	1	52	1.22
5673558--5673660	42	2.4	42	83	6	127	45	2	0	50	1.23
5674438--5674687	136	1.9	134	85	1	347	18	8	19	52	1.71
5678629--5678699	30	2.4	30	83	2	99	32	1	5	60	1.29
5678724--5678790	30	2.2	30	89	5	100	55	0	4	40	1.20
5678724--5678799	30	2.5	30	85	6	91	51	1	5	42	1.33
5679304--5679376	38	1.9	38	86	10	105	56	1	0	42	1.08
5679326--5679376	18	2.7	19	75	6	59	52	0	0	47	1.00
5679306--5679388	37	2.2	36	83	10	105	56	2	0	40	1.12
5680114--5680155	21	2.0	21	86	4	59	54	0	4	40	1.21
5680135--5680197	20	3.6	18	71	21	53	60	0	1	38	1.07
5680484--5680560	22	3.4	21	72	16	57	36	1	0	62	1.04
5686966--5687037	33	2.1	35	82	10	87	38	0	1	59	1.06
5688532--5688584	16	3.5	16	71	19	51	50	0	5	43	1.25
5691863--5691893	16	1.9	16	93	0	53	41	0	0	58	0.98
5691931--5691977	21	2.2	21	88	0	67	46	2	0	51	1.13
5693487--5693528	21	2.0	21	100	0	84	42	4	28	23	1.74
5694365--5694507	52	2.8	51	83	6	173	40	7	23	27	1.82
5694994--5695072	31	2.5	31	91	0	122	31	17	26	24	1.97
5695069--5695123	25	2.2	25	86	0	74	41	9	27	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5695140--5695189	25	2.0	25	88	0	73	40	6	32	22	1.78
5695483--5695633	53	2.9	52	86	3	196	43	7	23	25	1.81
5696119--5696183	31	2.1	31	94	0	112	32	18	24	24	1.97
5700683--5700803	50	2.4	50	82	4	129	27	8	6	57	1.52
5700700--5700803	50	2.1	50	85	0	136	26	9	6	56	1.56
5700820--5700845	13	2.0	13	100	0	52	30	7	0	61	1.24
5703421--5703473	24	2.2	25	83	10	65	75	5	3	15	1.13
5703421--5703476	25	2.2	26	81	12	64	75	5	3	16	1.13
5704361--5704418	3	21.3	3	75	19	56	62	0	3	34	1.12
5704370--5704433	5	12.2	5	86	5	74	57	3	3	35	1.30
5704870--5704918	14	3.6	14	78	15	66	48	0	0	51	1.00
5705879--5705942	21	3.0	21	69	20	53	46	1	1	50	1.20
5706477--5706536	31	2.0	31	90	3	95	61	10	8	20	1.53
5708373--5708403	2	15.5	2	93	0	53	48	0	3	48	1.17
5708910--5709002	22	4.6	20	70	17	66	35	2	1	61	1.15
5708926--5709001	23	3.3	24	79	15	65	34	1	1	63	1.11
5709496--5709533	18	2.1	18	85	9	51	65	0	2	31	1.06
5711479--5711504	3	8.7	3	100	0	52	30	0	34	34	1.58
5713054--5713143	30	2.9	30	87	9	128	38	6	17	36	1.76
5713451--5713514	33	2.0	33	96	3	121	28	18	6	46	1.73
5715101--5715174	38	1.9	39	84	13	100	50	2	24	22	1.62
5720510--5720552	2	21.5	2	100	0	86	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5725935--5725959	12	2.1	12	100	0	50	0	32	0	68	0.90
5726465--5726535	3	23.7	3	88	0	97	0	29	33	36	1.58
5735315--5736597	333	3.9	333	87	2	1693	35	13	12	38	1.83
5735315--5736545	666	1.8	667	88	2	1877	35	13	12	37	1.83
5737216--5737261	18	2.6	18	93	3	76	30	4	19	45	1.70
5745101--5745318	115	1.9	115	90	7	354	55	4	1	38	1.30
5749019--5749059	19	2.1	20	86	4	57	14	0	63	21	1.30
5749034--5749109	39	1.9	39	92	5	127	9	1	67	22	1.27
5749042--5749130	44	2.2	39	84	10	106	13	1	64	21	1.35
5749364--5749401	20	2.0	20	89	5	60	34	0	5	60	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147