genome.fa.s445.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  62  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11717879--11717978	22	4.5	22	91	0	155	30	12	20	38	1.88
11718038--11718110	19	3.8	19	96	0	128	27	15	28	28	1.96
11718479--11718507	7	4.3	7	95	4	51	13	0	0	86	0.58
11718476--11718512	12	3.0	12	84	7	56	16	0	0	83	0.64
11719424--11719752	178	1.8	177	82	10	420	45	7	10	36	1.68
11720649--11720869	109	2.0	109	100	0	442	37	9	5	48	1.58
11721221--11721255	2	18.0	2	88	5	54	48	2	0	48	1.16
11724288--11724322	17	2.0	18	88	5	54	28	8	11	51	1.67
11730562--11730595	8	4.0	8	85	14	50	17	0	0	82	0.67
11731414--11731442	13	2.1	14	93	6	51	6	6	3	82	0.93
11732295--11732330	18	1.9	19	88	5	56	8	5	11	75	1.19
11732296--11732350	18	3.2	17	75	14	51	9	1	9	80	0.99
11732315--11732354	21	2.0	20	85	5	53	7	0	10	82	0.84
11735577--11735626	21	2.4	21	86	0	64	18	2	28	52	1.56
11735672--11735804	14	9.3	15	66	14	75	18	0	30	50	1.52
11735780--11735897	21	5.4	21	73	11	94	20	0	27	50	1.54
11735665--11735834	30	5.9	28	79	8	128	20	0	29	50	1.53
11735700--11735840	58	2.4	58	81	8	171	19	0	30	48	1.54
11736368--11736410	11	3.9	11	88	11	70	81	0	0	18	0.69
11736373--11736410	15	2.6	16	84	16	55	81	0	0	18	0.69
11736528--11736582	21	2.6	21	75	8	58	25	16	27	30	1.96
11737731--11737785	26	2.1	26	83	6	67	9	3	5	81	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11737944--11737968	12	2.1	12	100	0	50	20	16	0	64	1.30
11746055--11746079	2	12.5	2	100	0	50	48	0	0	52	1.00
11747765--11747861	34	2.8	35	79	6	99	37	12	8	42	1.73
11750050--11750305	64	4.0	64	72	16	181	40	13	7	38	1.74
11756874--11756953	31	2.5	32	88	6	110	36	20	10	33	1.86
11758435--11758479	20	2.2	20	84	0	54	42	11	6	40	1.67
11763966--11764126	37	4.4	37	73	10	116	31	10	6	51	1.62
11764020--11764125	38	2.8	37	78	5	106	30	11	9	49	1.70
11765143--11765182	2	20.0	2	100	0	80	50	0	0	50	1.00
11765934--11766015	28	2.9	28	71	8	69	60	1	0	37	1.04
11767401--11767439	19	2.1	19	95	0	69	28	0	0	71	0.86
11771727--11771751	11	2.3	11	100	0	50	0	8	0	92	0.40
11772071--11772185	34	3.4	32	75	10	86	40	5	5	48	1.48
11772095--11772204	34	3.2	34	73	10	107	43	8	4	43	1.54
11772835--11772882	23	2.1	23	84	0	60	37	4	0	58	1.18
11785141--11785181	21	2.0	21	86	13	59	39	14	4	41	1.67
11788329--11788392	3	21.3	3	100	0	128	67	0	0	32	0.91
11788590--11788618	2	15.0	2	92	7	51	48	0	0	51	1.00
11790633--11790674	21	2.0	22	90	4	68	59	0	4	35	1.19
11798022--11798051	15	2.0	15	93	0	51	26	0	16	56	1.40
11799077--11799128	26	2.0	26	100	0	104	30	19	11	38	1.87
11805270--11805297	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11805401--11805778	193	2.0	193	86	3	537	40	9	4	45	1.57
11808677--11808702	6	4.3	6	100	0	52	84	0	0	15	0.62
11808766--11808800	15	2.3	15	90	9	54	2	22	0	74	0.95
11809944--11809976	15	2.3	15	89	5	50	54	0	3	42	1.15
11810938--11810971	15	2.3	15	90	5	52	55	0	2	41	1.15
11811537--11811573	15	2.3	17	86	9	51	54	0	5	40	1.24
11815933--11816842	459	2.0	460	90	3	1431	42	5	6	45	1.53
11817935--11817967	15	2.2	15	89	10	50	51	0	0	48	1.00
11817932--11817964	17	1.9	17	93	0	57	54	0	0	45	0.99
11817950--11817984	18	1.9	18	88	0	52	51	0	0	48	1.00
11819401--11819516	60	1.9	60	96	0	214	36	8	20	34	1.84
11819409--11819504	30	3.2	30	68	21	92	37	9	18	34	1.83
11820602--11820655	22	2.4	21	80	17	56	53	0	5	40	1.24
11820602--11820663	23	2.5	26	74	10	67	53	0	4	41	1.22
11823759--11823828	37	1.9	37	82	8	90	21	2	5	70	1.22
11824297--11824362	15	4.2	16	78	9	64	54	22	1	21	1.53
11824297--11824370	23	3.2	25	72	16	70	52	24	1	21	1.54
11824436--11824573	30	4.6	30	71	19	92	48	24	2	24	1.62
11824367--11824514	30	5.1	29	68	13	90	49	26	1	22	1.58
11826072--11826106	13	2.7	13	86	0	52	37	20	2	40	1.67
11826984--11827032	20	2.5	20	83	6	64	46	2	0	51	1.12
11827348--11827446	52	1.9	51	85	6	137	48	4	7	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11829382--11829408	2	13.5	2	100	0	54	48	0	0	51	1.00
11829943--11829978	18	1.9	19	88	5	56	16	2	0	80	0.83
11830368--11830396	14	2.1	14	100	0	58	34	0	13	51	1.42
11830840--11831006	82	2.0	82	97	0	316	37	7	10	44	1.67
11832956--11833035	29	2.7	30	72	18	78	5	22	1	71	1.13
11832966--11833049	27	3.2	27	75	21	90	3	22	1	72	1.07
11833021--11833083	15	4.0	15	72	10	54	0	23	1	74	0.90
11835138--11835171	16	2.1	16	88	5	50	82	8	2	5	0.93
11835382--11835426	13	3.3	13	77	22	56	73	0	0	26	0.84
11835370--11835426	28	2.1	27	83	3	69	73	0	1	24	0.92
11837018--11837054	15	2.3	17	86	9	51	54	0	5	40	1.24
11841126--11841150	2	12.5	2	100	0	50	52	0	0	48	1.00
11842709--11842743	18	1.9	18	88	0	52	48	0	2	48	1.16
11842739--11842776	14	2.8	14	88	4	51	47	0	0	52	1.00
11842714--11842795	23	3.6	23	69	16	64	51	0	2	46	1.14
11842788--11842827	20	2.1	19	85	4	53	35	2	0	62	1.09
11845288--11845345	22	2.6	22	83	0	71	51	3	8	36	1.49
11845825--11845877	19	2.5	22	69	27	60	39	3	13	43	1.62
11845837--11845876	19	2.1	19	95	0	71	42	0	12	45	1.42
11845841--11845883	19	2.3	19	83	0	50	41	6	9	41	1.64
11845895--11846016	11	11.4	11	71	7	72	46	4	7	40	1.53
11846012--11846059	22	2.2	22	85	3	62	45	12	10	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11846062--11846119	21	2.7	22	81	2	73	41	12	8	37	1.73
11846087--11846145	22	2.7	22	83	0	73	44	8	10	37	1.69
11846436--11846530	45	2.1	45	83	9	115	53	4	7	34	1.48
11846473--11846530	22	2.6	23	83	5	82	55	5	6	32	1.49
11846489--11846748	22	11.7	22	68	12	140	47	5	10	36	1.60
11846500--11846750	44	5.6	45	75	9	158	47	5	10	37	1.60
11846504--11846761	90	2.9	87	74	12	229	47	5	10	36	1.61
11846815--11846892	22	3.5	22	75	13	79	46	3	14	35	1.62
11846944--11847007	22	2.9	22	75	6	67	43	10	7	37	1.69
11847012--11847091	22	3.6	22	77	0	79	46	6	8	38	1.60
11847003--11847089	44	2.0	44	81	0	102	45	6	9	37	1.63
11847464--11847508	22	2.1	21	84	8	63	46	8	8	35	1.66
11847465--11847574	21	5.1	22	70	11	77	48	8	8	35	1.63
11847502--11847592	42	2.2	42	82	4	103	49	6	7	36	1.58
11847538--11847592	21	2.6	21	85	5	76	47	9	7	36	1.63
11847544--11847646	48	2.1	48	82	7	120	49	6	3	39	1.48
11848705--11848820	60	1.9	60	91	3	189	34	7	22	35	1.83
11850026--11850064	14	2.8	14	88	0	51	48	0	0	51	1.00
11850076--11850115	20	2.1	19	85	4	53	35	2	0	62	1.09
11858465--11859110	315	2.1	315	96	0	1204	27	10	14	46	1.78
11862563--11862607	20	2.3	20	88	7	67	62	0	2	35	1.08
11864006--11864057	20	2.9	19	72	27	51	75	13	0	11	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11874546--11874881	48	7.0	48	80	6	308	27	10	22	40	1.86
11874543--11874850	140	2.2	144	82	5	358	26	10	22	40	1.86
11875188--11875234	19	2.4	19	85	3	67	74	12	0	12	1.07
11875172--11875228	19	3.2	18	83	11	64	73	10	0	15	1.09
11875198--11875241	20	2.1	22	83	8	56	77	9	2	11	1.08
11876013--11876049	19	1.9	19	94	0	65	37	27	18	16	1.92
11881819--11881869	13	4.0	13	82	5	68	43	29	9	17	1.81
11881796--11881856	25	2.4	25	86	0	77	44	34	4	16	1.69
11882515--11883782	185	6.9	186	85	4	1415	39	11	14	35	1.82
11882515--11883782	368	3.4	368	84	4	1433	39	11	14	35	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147