genome.fa.s445.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  7  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1341331--1341407	29	2.6	29	81	6	84	19	0	32	48	1.49
1341391--1341433	14	3.1	14	80	3	52	16	0	27	55	1.41
1341474--1341545	15	4.6	16	79	8	67	19	1	30	48	1.57
1341940--1341999	8	7.2	8	75	7	57	76	1	0	21	0.87
1341937--1341999	17	3.8	16	81	10	74	76	1	0	22	0.88
1343003--1343056	23	2.3	24	81	6	67	37	0	0	62	0.95
1343008--1343076	18	3.8	18	80	18	72	42	0	0	57	0.98
1343379--1343410	7	4.4	7	96	4	55	81	0	0	18	0.70
1346299--1346442	52	2.8	52	83	2	182	27	21	6	44	1.77
1346467--1346508	11	3.8	11	87	0	66	50	28	2	19	1.60
1346467--1346509	22	2.0	22	95	0	77	48	27	2	20	1.62
1346737--1346792	25	2.3	25	81	6	71	28	35	3	32	1.74
1346751--1346876	25	5.1	25	77	3	121	21	34	7	36	1.81
1346765--1346876	49	2.3	50	84	7	140	21	34	8	35	1.83
1347407--1347552	52	2.8	52	87	2	204	28	26	6	39	1.80
1347729--1347770	19	2.3	19	83	4	59	73	0	0	26	0.83
1347807--1347864	14	4.4	14	76	8	59	51	6	0	41	1.28
1349401--1349425	13	1.9	13	100	0	50	32	16	16	36	1.90
1349565--1349596	15	2.1	15	100	0	64	28	0	18	53	1.45
1351212--1351259	21	2.3	20	89	7	69	77	4	2	16	1.03
1351663--1351728	3	22.0	3	96	0	123	65	0	1	33	1.02
1351727--1351752	3	8.7	3	100	0	52	34	0	30	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1351839--1351897	27	2.2	27	84	3	75	44	18	16	20	1.87
1351851--1351905	27	2.0	27	86	6	76	41	21	18	18	1.90
1352124--1352501	119	3.2	120	79	5	385	44	14	21	20	1.86
1353387--1353420	11	3.2	11	87	8	52	0	11	0	88	0.52
1353387--1353419	10	3.2	10	95	4	57	0	12	0	87	0.53
1360267--1360317	12	4.2	12	78	11	59	17	1	3	76	1.03
1361169--1361214	7	6.7	7	80	12	51	26	0	4	69	1.07
1361177--1361231	26	2.1	25	80	12	58	27	0	7	65	1.19
1361249--1361314	5	12.4	5	78	12	53	18	4	0	77	0.94
1361243--1361309	11	5.9	11	81	11	82	17	5	0	76	0.99
1361243--1361309	6	11.7	6	82	7	70	17	5	0	76	0.99
1361259--1361308	17	2.9	17	85	5	64	18	6	0	76	0.99
1361331--1361727	58	6.8	57	81	9	437	43	6	11	38	1.67
1361327--1361727	117	3.4	115	85	9	490	43	6	11	38	1.67
1361330--1361727	60	6.8	57	81	9	448	43	6	11	38	1.66
1364820--1364850	15	2.1	15	93	0	53	19	29	6	45	1.75
1368783--1368841	25	2.3	26	86	11	79	33	5	30	30	1.79
1373109--1373389	41	6.8	41	80	9	220	28	13	18	39	1.89
1373154--1373440	41	6.8	40	75	11	168	28	13	18	39	1.89
1373154--1373440	125	2.3	125	80	8	314	28	13	18	39	1.89
1373233--1373482	46	5.7	46	76	15	176	28	14	18	40	1.89
1373771--1373827	20	2.8	20	86	2	78	31	5	0	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375290--1375806	58	8.9	57	82	9	568	37	10	5	45	1.63
1375282--1375793	118	4.4	117	85	7	609	37	10	5	45	1.63
1375290--1375804	176	2.9	174	86	7	643	38	10	5	45	1.64
1375523--1375611	31	3.1	28	63	21	67	39	12	5	42	1.66
1375683--1375778	31	3.2	31	68	11	83	39	8	4	47	1.53
1375728--1375798	31	2.6	27	76	20	74	38	7	2	52	1.44
1375876--1375913	16	2.4	16	86	0	58	76	7	2	13	1.11
1377574--1377618	21	2.1	21	88	8	65	77	6	0	15	0.96
1377572--1377609	17	2.3	16	86	13	51	78	5	0	15	0.91
1378006--1378046	19	2.3	19	87	8	59	24	2	4	68	1.22
1378546--1378611	31	2.1	31	86	5	89	62	13	0	24	1.31
1379110--1379139	15	2.0	15	93	0	51	30	20	30	20	1.97
1379762--1379808	12	3.8	12	76	13	51	46	2	4	46	1.34
1379769--1379815	14	3.5	14	77	11	62	48	2	2	46	1.25
1379766--1379815	26	1.9	26	100	0	100	48	2	4	46	1.32
1384622--1384668	20	2.3	20	82	7	60	48	0	4	46	1.21
1384771--1384811	21	2.0	21	95	0	73	31	0	24	43	1.54
1384762--1384814	21	2.4	22	78	21	65	35	0	22	41	1.54
1395168--1395197	10	3.1	10	95	4	53	60	0	0	40	0.97
1407978--1408007	15	1.9	16	93	6	53	36	0	13	50	1.42
1408706--1408761	22	2.5	22	100	0	112	42	7	0	50	1.30
1409538--1409609	29	2.4	30	81	2	83	30	12	2	54	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414120--1414157	12	3.2	12	81	7	51	36	0	2	60	1.11
1414131--1414210	33	2.7	28	77	20	90	42	1	6	50	1.35
1414145--1414219	33	2.3	32	90	6	123	42	1	5	50	1.33
1417818--1417869	22	2.5	22	90	6	81	51	0	0	48	1.00
1417842--1417902	30	2.0	30	83	0	77	54	1	0	44	1.10
1422350--1422374	2	12.5	2	100	0	50	0	52	0	48	1.00
1422832--1422865	16	2.1	17	88	5	52	5	17	0	76	0.98
1433900--1433935	3	12.0	3	100	0	72	66	0	0	33	0.92
1434410--1434441	3	10.7	3	100	0	64	68	0	0	31	0.90
1446375--1446447	24	3.0	24	72	6	67	38	1	4	56	1.27
1449286--1449345	28	2.1	29	93	3	104	28	16	10	45	1.80
1450085--1450172	32	2.7	33	77	8	101	15	18	19	46	1.84
1458685--1458773	44	2.0	44	91	4	144	38	1	7	52	1.38
1458889--1458943	27	2.1	26	89	3	83	36	0	0	63	0.95
1459808--1459840	2	16.5	2	100	0	66	48	0	0	51	1.00
1460192--1460234	22	2.0	22	86	9	61	51	4	2	41	1.35
1462719--1462753	2	17.5	2	100	0	70	51	0	48	0	1.00
1470143--1470187	21	2.2	20	84	11	56	68	11	0	20	1.19
1471072--1471116	21	2.1	22	84	8	58	42	6	2	48	1.41
1471156--1471206	23	2.2	23	86	6	68	41	1	1	54	1.22
1471556--1471602	19	2.4	19	79	13	51	42	0	0	57	0.98
1471771--1471898	64	2.0	64	100	0	256	42	6	6	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1472016--1472055	13	3.1	13	81	0	53	60	0	0	40	0.97
1473524--1473561	15	2.4	16	82	4	51	57	7	0	34	1.28
1476050--1476078	11	2.6	11	100	0	58	0	37	0	62	0.96
1476046--1476077	11	2.6	13	80	19	50	0	40	0	59	0.97
1482819--1482919	52	2.0	51	86	9	143	51	13	8	25	1.70
1483795--1483831	15	2.4	16	82	17	51	59	10	18	10	1.59
1490154--1490194	22	1.9	22	90	5	66	51	0	0	48	1.00
1494681--1494726	20	2.2	22	80	11	60	39	0	6	54	1.26
1495461--1495515	25	2.2	26	83	9	69	47	0	0	52	1.00
1496842--1496886	21	2.2	20	84	4	54	40	0	4	55	1.20
1498215--1498263	24	2.0	24	88	0	71	38	28	18	14	1.90
1502580--1502665	27	3.0	28	76	20	74	44	0	1	54	1.07
1502580--1502665	28	3.0	30	78	20	96	44	0	1	54	1.07
1503992--1504050	13	4.6	13	80	16	61	57	1	6	33	1.35
1510469--1510493	4	6.2	4	100	0	50	52	24	0	24	1.48
1512857--1512915	3	19.7	3	100	0	118	66	0	0	33	0.92
1518130--1518168	2	19.5	2	100	0	78	51	0	0	48	1.00
1521285--1521356	12	6.0	12	76	12	51	63	1	1	33	1.11
1521915--1522046	52	2.7	48	82	11	167	24	46	9	19	1.78
1522072--1522272	50	4.0	47	80	13	163	23	48	3	23	1.67
1522337--1522526	48	3.9	48	82	3	213	26	50	2	21	1.60
1522393--1522480	27	3.5	26	70	17	69	29	47	1	21	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1522372--1522669	48	6.2	48	75	9	155	27	47	3	21	1.65
1530757--1530860	52	2.0	51	92	5	174	50	14	7	26	1.69
1531731--1531767	15	2.4	16	82	17	51	59	10	18	10	1.59
1531865--1531889	13	1.9	13	100	0	50	8	4	0	88	0.64
1537440--1537487	24	2.0	24	100	0	96	41	12	12	33	1.80
1541789--1541823	14	2.5	14	100	0	70	51	37	5	5	1.50
1543370--1543405	18	2.0	18	88	0	54	50	0	0	50	1.00
1544765--1544811	21	2.3	20	85	3	58	38	0	4	57	1.18
1546136--1546184	24	2.0	24	88	0	71	38	28	18	14	1.90
1550943--1551001	29	2.0	29	83	0	73	44	1	5	49	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147