genome.fa.s445.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  41  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8337520--8337553	14	2.5	13	90	9	50	35	11	2	50	1.54
8337637--8337677	19	2.1	19	86	9	55	68	0	0	31	0.90
8337676--8337704	14	2.0	15	93	6	51	48	3	0	48	1.18
8338667--8338708	20	2.1	20	86	8	59	57	0	0	42	0.99
8338715--8338739	13	1.9	13	100	0	50	68	0	0	32	0.90
8338717--8338772	22	2.5	22	82	5	67	62	1	0	35	1.06
8341811--8341850	5	8.0	5	94	0	62	35	0	5	60	1.19
8342295--8342327	16	2.1	16	94	0	57	33	0	3	63	1.10
8342988--8343025	20	1.9	19	89	5	58	50	5	0	44	1.24
8343090--8343167	21	3.8	20	78	11	77	64	6	2	26	1.31
8343090--8343167	10	7.5	11	71	17	60	64	6	2	26	1.31
8343134--8343174	21	2.0	21	85	0	55	63	4	7	24	1.40
8343489--8343529	9	4.3	9	82	11	55	56	2	0	41	1.13
8343489--8343533	20	2.4	19	85	10	58	51	2	0	46	1.13
8343821--8343907	10	8.7	10	80	9	79	37	1	6	54	1.35
8343819--8343924	19	5.3	19	73	8	86	38	2	6	51	1.43
8343874--8343918	20	2.2	20	88	7	65	26	2	8	62	1.37
8343962--8344001	20	2.1	19	90	4	62	47	0	5	47	1.24
8343962--8344025	19	3.3	20	76	12	62	43	0	7	48	1.32
8343953--8344019	18	3.7	18	80	9	64	47	0	5	46	1.27
8344363--8344391	2	15.0	2	92	7	51	48	0	0	51	1.00
8348581--8348627	9	5.1	9	80	14	51	34	2	0	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8348664--8348728	19	3.5	19	77	6	62	52	6	3	38	1.42
8348922--8348951	16	1.9	15	93	6	51	53	0	0	46	1.00
8348908--8348961	26	2.0	29	85	10	78	48	1	0	50	1.11
8348977--8349025	17	2.9	17	80	19	50	57	2	0	40	1.10
8352835--8352869	17	2.1	17	94	0	61	40	2	0	57	1.14
8353122--8353203	29	2.8	30	76	9	89	48	1	1	48	1.17
8354091--8354123	17	1.9	17	88	11	50	84	3	0	12	0.72
8354118--8354381	143	1.9	143	84	1	361	47	13	13	25	1.79
8354339--8354387	26	1.9	26	87	4	73	65	0	0	34	0.93
8354353--8354393	13	3.2	13	80	13	50	68	0	0	31	0.90
8354339--8354394	26	2.2	26	83	6	69	67	0	0	32	0.91
8354267--8354521	121	2.1	124	85	4	347	47	13	13	25	1.79
8354510--8354559	20	2.6	19	81	15	66	72	4	4	20	1.18
8357919--8357945	10	2.7	10	100	0	54	0	7	0	92	0.38
8360173--8360208	18	2.0	18	94	0	63	13	2	16	66	1.36
8360174--8360215	18	2.3	18	87	4	57	16	2	14	66	1.35
8362460--8362532	21	3.5	21	72	22	57	69	1	6	21	1.19
8363307--8363508	3	68.0	3	78	13	213	59	2	2	34	1.27
8364613--8364659	19	2.6	18	77	12	51	6	12	6	74	1.20
8369405--8369490	17	5.2	16	71	18	68	74	2	5	17	1.12
8369436--8369496	24	2.5	24	84	10	72	75	0	8	16	1.03
8369874--8369927	20	2.7	20	75	8	56	40	33	7	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8370280--8370456	3	59.7	3	68	18	95	57	4	3	34	1.36
8370310--8370406	46	2.1	43	85	9	122	55	4	2	38	1.31
8373980--8374018	21	1.9	19	90	10	60	30	0	0	69	0.89
8389277--8389336	23	2.6	23	69	10	59	21	5	3	70	1.22
8389729--8389788	28	2.2	28	88	8	88	30	5	8	56	1.50
8390293--8390344	24	2.2	24	89	0	77	44	1	7	46	1.43
8390568--8390816	130	1.9	130	80	5	292	42	13	11	32	1.80
8396706--8396938	115	2.0	115	85	5	319	42	11	15	31	1.81
8399540--8399596	22	2.5	22	82	2	69	17	1	0	80	0.79
8399590--8399629	19	2.2	19	90	4	64	45	0	0	55	0.99
8415814--8415990	64	2.8	64	76	9	161	36	12	10	39	1.79
8416101--8416334	64	3.7	63	81	3	200	34	14	11	39	1.82
8416149--8416335	64	2.9	63	82	3	223	33	14	11	40	1.81
8416567--8416706	65	2.2	65	78	1	147	37	14	11	36	1.82
8416259--8416929	369	1.8	369	81	3	830	36	12	11	39	1.78
8419266--8419576	161	1.9	161	81	3	376	31	13	20	34	1.92
8420087--8420118	9	3.7	9	95	4	57	21	0	9	68	1.17
8420556--8420612	25	2.3	24	76	8	60	40	5	17	36	1.72
8420630--8420687	30	1.9	30	89	6	91	27	18	24	29	1.98
8421092--8421121	5	5.8	5	96	4	51	20	0	0	80	0.72
8421103--8421161	13	4.6	13	80	14	61	15	1	5	77	1.01
8421093--8421170	4	18.5	4	79	11	52	16	1	3	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8421238--8421594	61	5.8	59	84	10	434	44	6	13	34	1.70
8421239--8421595	119	2.9	122	87	8	469	44	7	13	34	1.71
8425411--8425470	8	7.6	8	79	7	61	76	0	16	6	0.99
8425411--8425471	31	1.9	33	90	6	99	75	0	18	6	1.01
8426703--8427529	42	20.0	42	89	7	1094	22	17	21	38	1.93
8426703--8427529	83	10.0	82	90	6	1140	22	17	21	38	1.93
8427557--8427613	16	3.5	16	97	2	105	87	12	0	0	0.54
8427537--8427614	17	4.5	17	87	6	104	87	8	3	0	0.67
8427536--8427616	1	81.0	1	77	0	72	87	8	3	0	0.65
8427778--8427809	9	3.7	9	95	4	57	21	0	9	68	1.17
8428312--8428375	30	2.1	31	82	11	78	26	18	23	31	1.98
8428320--8428381	30	2.1	30	85	11	83	29	14	24	32	1.94
8428778--8428855	8	10.6	7	74	17	61	12	1	3	82	0.88
8428780--8428851	13	5.5	12	75	23	65	11	1	4	83	0.85
8428788--8428858	4	18.5	4	76	11	60	14	1	4	80	0.93
8428801--8428871	33	2.2	33	82	5	81	16	1	8	73	1.15
8428778--8428858	19	4.2	19	83	10	85	13	1	3	81	0.89
8428785--8428908	20	5.9	20	72	14	74	17	1	5	75	1.08
8428926--8429281	61	5.8	59	83	10	434	45	6	13	34	1.70
8428927--8429282	119	2.9	122	86	9	462	44	6	13	34	1.70
8431843--8431890	18	2.6	17	83	9	51	43	33	6	16	1.73
8437052--8437100	16	3.0	17	79	8	57	10	6	6	77	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8437120--8437199	24	3.2	24	76	3	79	63	10	3	22	1.41
8437119--8437199	6	13.2	6	73	3	54	62	9	3	23	1.42
8448510--8448563	12	4.5	12	84	9	65	64	3	5	25	1.32
8448504--8448563	6	10.0	6	76	7	59	65	5	5	25	1.34
8448504--8448563	24	2.5	24	81	10	77	65	5	5	25	1.34
8450328--8450372	22	2.1	22	87	4	65	80	0	20	0	0.72
8450329--8450399	31	2.4	30	84	11	94	78	1	16	2	0.94
8450328--8450399	21	3.4	21	75	12	67	79	1	16	2	0.93
8451555--8451583	5	5.8	5	100	0	58	82	0	17	0	0.66
8452391--8452437	23	2.1	22	92	4	76	82	0	17	0	0.66
8452391--8452436	13	3.8	13	77	16	53	82	0	17	0	0.67
8452585--8452625	12	3.2	13	83	13	50	78	2	17	2	0.98
8452793--8452886	31	2.9	33	76	6	102	34	13	19	32	1.91
8452810--8452909	31	3.2	32	74	5	96	37	14	18	31	1.90
8453167--8453252	23	3.5	23	68	17	64	29	16	17	37	1.91
8453115--8453255	52	2.7	51	82	5	160	31	17	16	35	1.92
8453926--8454132	46	4.5	46	80	2	218	31	11	14	42	1.81
8469291--8469358	34	2.0	33	88	8	102	44	30	2	22	1.67
8470440--8470543	52	2.0	52	87	7	149	29	15	5	49	1.68
8471046--8471106	24	2.6	23	84	2	59	22	4	11	60	1.50
8475258--8475441	39	4.7	39	73	5	131	38	18	20	23	1.94
8475256--8475440	78	2.4	78	80	5	187	37	18	20	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8483110--8483170	18	3.3	18	95	2	104	8	0	47	44	1.33
8483184--8483234	26	2.0	26	84	0	66	21	3	35	39	1.72
8483210--8483333	20	6.1	20	71	13	83	20	0	32	45	1.57
8483403--8483510	50	2.1	51	86	1	146	43	14	13	27	1.84
8485938--8486077	21	6.6	21	69	10	79	35	7	12	43	1.72
8485945--8486040	42	2.3	41	82	5	113	36	6	14	42	1.71
8489526--8489597	22	3.3	22	71	9	67	45	4	9	40	1.56
8490290--8490324	17	1.9	19	88	11	56	22	2	0	74	0.95
8492535--8492566	16	2.1	15	94	5	55	15	0	25	59	1.36
8492722--8492774	19	2.8	18	88	8	79	43	16	1	37	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147