genome.fa.s445.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  113  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20363813--20363864	14	3.6	14	85	12	61	15	1	3	78	0.98
20368803--20368940	55	2.5	55	85	5	181	21	21	12	44	1.84
20369071--20369403	86	3.9	86	78	8	290	33	16	11	37	1.85
20369286--20369319	17	1.9	18	88	5	52	44	17	11	26	1.83
20369856--20369953	51	1.9	51	91	0	160	36	9	14	39	1.78
20370457--20370498	13	3.1	13	89	6	57	14	0	4	80	0.86
20370463--20370520	20	3.0	20	78	16	68	17	3	1	77	0.99
20371089--20371364	140	2.0	140	85	0	372	30	18	14	36	1.91
20374761--20374795	2	17.5	2	87	0	52	45	2	2	48	1.32
20374761--20374799	14	2.8	14	88	0	51	43	2	2	51	1.29
20386244--20386322	39	2.0	39	87	4	115	34	11	5	49	1.61
20386957--20386992	16	2.3	15	95	4	63	63	0	0	36	0.94
20387199--20387272	25	2.9	27	74	13	84	47	4	0	48	1.20
20387261--20387304	9	4.6	10	86	5	56	34	2	0	63	1.07
20387300--20387353	27	2.0	27	85	7	74	48	5	3	42	1.44
20388010--20388094	33	2.5	34	79	9	93	43	7	8	41	1.62
20388115--20388206	35	2.7	34	79	14	100	36	10	9	42	1.73
20388596--20388629	15	2.3	15	90	5	52	11	14	0	73	1.10
20388564--20388661	48	2.0	48	94	0	169	23	17	4	55	1.59
20390594--20390684	29	3.1	29	80	1	92	58	10	5	25	1.54
20390994--20391036	21	2.0	21	86	0	59	48	2	9	39	1.48
20391911--20391940	12	2.4	12	94	5	51	23	0	23	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20392272--20392323	15	3.5	15	67	0	50	44	5	0	50	1.26
20392277--20392338	30	2.1	30	100	0	124	38	6	0	54	1.26
20393442--20393479	14	2.7	15	84	8	53	39	0	5	55	1.23
20395194--20395221	2	14.0	2	100	0	56	50	0	0	50	1.00
20399065--20399119	23	2.4	23	78	3	67	70	7	0	21	1.11
20405798--20405849	19	2.7	19	90	3	77	32	3	13	50	1.60
20410453--20410488	13	2.9	12	92	8	63	19	0	0	80	0.71
20410453--20410488	6	5.8	6	93	6	63	19	0	0	80	0.71
20411230--20411271	20	2.2	20	87	8	61	35	7	2	54	1.41
20411376--20411418	14	3.0	14	86	3	59	23	0	4	72	1.04
20412840--20412892	24	2.3	23	83	3	61	7	7	5	79	1.06
20412860--20412905	19	2.4	20	85	7	60	2	10	2	84	0.79
20412863--20412905	20	2.2	20	87	8	61	2	11	2	83	0.83
20413256--20413390	57	2.4	56	81	9	166	48	18	8	24	1.77
20413280--20413544	57	4.6	57	77	9	193	47	17	10	25	1.79
20413450--20413571	57	2.1	56	85	5	156	46	15	11	26	1.80
20413863--20413893	11	2.8	11	100	0	62	45	16	19	19	1.86
20421103--20421127	13	1.9	13	100	0	50	24	4	0	72	1.02
20421100--20421190	21	4.1	22	73	17	64	24	4	1	70	1.12
20433502--20433581	30	2.7	30	84	1	99	37	3	5	53	1.41
20433534--20433584	14	3.5	14	73	19	50	35	0	3	60	1.15
20433490--20433585	29	3.3	29	82	1	120	37	3	6	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20435072--20435157	40	2.2	40	87	2	120	45	6	3	44	1.47
20437867--20437917	17	2.6	19	79	17	52	23	41	0	35	1.55
20438114--20438174	29	2.1	28	85	8	79	26	3	13	57	1.51
20438462--20438497	17	2.3	17	86	13	51	30	2	8	58	1.42
20443770--20443807	3	12.7	3	94	0	67	36	0	0	63	0.95
20446124--20446206	31	2.7	31	92	0	139	38	18	18	25	1.92
20447317--20447384	21	3.0	23	76	12	59	35	2	4	57	1.34
20453363--20453429	29	2.2	31	84	5	84	47	0	2	49	1.16
20453371--20453441	29	2.4	29	78	4	70	50	0	4	45	1.21
20455894--20455933	2	20.0	2	100	0	80	50	0	0	50	1.00
20456846--20456903	9	6.3	9	74	20	50	29	1	3	65	1.19
20456919--20456971	18	2.8	18	83	8	61	45	0	3	50	1.19
20456916--20456980	19	3.4	19	78	14	62	43	1	3	52	1.26
20456919--20456980	18	3.3	18	76	14	54	41	1	3	53	1.27
20456916--20456981	20	3.4	19	71	22	57	42	1	3	53	1.25
20457225--20457268	22	1.9	24	86	9	65	54	0	6	38	1.27
20457343--20457377	16	2.1	17	89	5	54	37	2	5	54	1.39
20461407--20461449	22	2.0	22	86	9	61	48	0	2	48	1.14
20463734--20463904	87	2.0	87	96	0	315	45	13	11	29	1.78
20465415--20465457	16	2.7	16	82	7	52	16	4	0	79	0.90
20467025--20467443	200	2.1	200	85	3	567	37	15	15	31	1.90
20467350--20467447	36	2.8	34	79	8	99	37	15	20	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20467457--20467676	40	5.7	40	74	11	152	41	15	13	29	1.86
20467479--20467625	74	2.0	74	83	0	186	38	18	15	27	1.91
20467558--20467668	39	2.8	38	82	6	123	39	16	14	29	1.88
20473856--20473994	69	2.0	69	83	5	174	37	15	12	34	1.85
20479236--20479281	23	2.1	23	84	8	60	23	2	13	60	1.43
20479923--20479965	15	2.9	14	80	10	50	69	2	0	27	1.00
20480937--20480977	14	3.1	13	83	16	57	65	0	0	34	0.93
20480941--20480974	3	12.0	3	87	12	54	67	0	0	32	0.91
20487632--20487714	26	3.2	26	79	8	80	19	7	20	53	1.69
20487725--20487812	13	6.8	13	74	8	63	21	4	22	51	1.66
20487725--20487783	27	2.2	26	90	0	82	20	3	25	50	1.63
20487645--20487826	40	4.6	39	71	9	109	21	5	21	51	1.68
20487781--20487824	13	3.5	13	84	6	54	27	6	20	45	1.76
20487954--20487980	14	1.9	14	100	0	54	22	3	0	74	0.98
20488032--20488071	3	13.3	3	100	0	80	32	0	0	67	0.91
20488207--20488246	4	10.8	4	94	5	59	25	0	0	75	0.81
20489839--20489919	17	4.9	16	70	25	62	23	1	3	71	1.09
20489857--20489921	6	10.3	6	74	21	53	23	1	1	73	1.00
20489841--20489914	34	2.1	35	87	7	107	24	1	2	71	1.07
20491285--20491336	26	2.0	26	100	0	104	46	7	23	23	1.78
20491437--20491482	23	2.0	23	100	0	92	21	4	26	47	1.69
20492977--20493009	4	8.2	4	93	0	57	72	3	0	24	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20493301--20493357	16	3.6	16	74	6	53	64	0	19	15	1.28
20493297--20493347	17	3.1	17	77	5	59	62	0	17	19	1.32
20496083--20496199	21	5.5	21	86	2	117	31	16	15	36	1.90
20496100--20496192	42	2.2	43	92	1	152	29	16	17	37	1.91
20496098--20496181	21	4.0	21	93	1	141	32	15	15	36	1.89
20496100--20496199	21	4.7	21	88	2	119	29	17	17	37	1.92
20504087--20504118	2	16.0	2	100	0	64	50	0	0	50	1.00
20511392--20511421	12	2.5	12	88	0	51	23	10	33	33	1.88
20526397--20526437	15	2.7	15	92	0	64	14	2	29	53	1.54
20527281--20527338	25	2.4	25	79	2	64	18	13	10	56	1.65
20527397--20527430	15	2.3	15	90	10	52	14	8	5	70	1.31
20527344--20527462	36	3.2	35	83	11	139	16	10	9	63	1.50
20527411--20527451	21	1.9	21	90	5	64	14	7	4	73	1.22
20527397--20527474	36	2.1	35	81	6	84	14	12	6	66	1.42
20527526--20527581	19	2.8	20	76	15	71	3	21	0	75	0.96
20527631--20527705	21	3.8	20	75	18	75	4	14	0	81	0.83
20527632--20527705	30	2.6	28	85	8	96	4	14	0	81	0.84
20528551--20528588	20	1.9	20	94	0	67	57	0	26	15	1.38
20529183--20529335	69	2.2	69	81	5	166	48	11	19	20	1.79
20529245--20529335	34	2.6	34	82	3	110	53	10	15	19	1.71
20529314--20529552	70	3.2	74	71	10	204	48	11	18	21	1.80
20529234--20529550	145	2.2	144	81	5	386	47	12	19	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20529280--20529624	145	2.4	146	80	1	381	48	11	18	21	1.79
20529832--20530176	35	9.8	35	68	9	105	46	12	20	20	1.83
20530464--20530513	22	2.3	22	79	3	57	4	10	6	80	1.02
20530672--20530839	81	2.1	81	85	0	219	38	15	10	35	1.82
20531234--20531318	44	1.9	45	80	7	102	24	18	29	27	1.98
20531352--20531416	28	2.3	29	84	7	98	35	18	13	32	1.90
20533718--20533770	12	4.3	12	77	13	54	3	9	5	81	0.98
20535746--20535792	17	3.0	16	75	15	53	34	6	6	53	1.52
20535736--20535800	31	2.1	30	91	2	103	33	4	4	56	1.40
20535736--20535783	14	3.2	14	78	16	60	33	4	2	60	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147