Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  126  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22757569--22757602
2
17.0
2
100
0
68
50
0
50
0
1.00
22759210--22759253
20
2.3
19
88
4
61
56
2
0
40
1.11
22763263--22763301
11
3.5
11
83
13
53
61
0
0
38
0.96
22764593--22764631
2
19.5
2
94
0
60
48
5
0
46
1.24
22764914--22764965
5
9.8
5
81
8
59
19
1
1
76
0.97
22764916--22764968
22
2.5
21
80
14
63
18
1
1
77
0.96
22765259--22765310
6
8.5
6
75
12
52
21
1
0
76
0.87
22765251--22765312
21
3.0
20
80
17
74
22
4
0
72
1.03
22765251--22765298
21
2.3
22
89
10
75
20
4
0
75
0.97
22765242--22765327
27
3.2
27
74
20
74
22
4
0
73
1.02
22767726--22767754
14
2.0
15
93
6
51
82
0
17
0
0.66
22768487--22768531
17
2.8
16
83
12
56
22
2
2
73
1.05
22768485--22768537
5
10.0
5
82
8
61
20
1
1
75
0.99
22768819--22768869
21
2.5
21
87
12
79
21
3
0
74
0.98
22768823--22768869
14
3.5
13
80
11
58
21
2
0
76
0.89
22768824--22768887
28
2.3
29
81
8
78
21
3
0
75
0.95
22772822--22772849
10
2.8
10
100
0
56
89
0
10
0
0.49
22773235--22773268
16
2.1
16
88
0
50
70
0
17
11
1.16
22774342--22774395
22
2.5
22
81
6
56
40
11
18
29
1.85
22776003--22776048
4
11.8
4
77
13
51
19
2
2
76
1.00
22776071--22776109
17
2.2
18
86
4
53
12
5
2
79
1.00
22776078--22776137
11
5.5
11
84
9
70
15
1
5
78
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22776078--22776137
23
2.7
21
80
12
75
15
1
5
78
1.00
22776189--22776705
59
8.7
59
84
8
590
44
7
12
35
1.70
22776192--22776707
178
2.9
176
87
6
699
44
7
12
35
1.71
22776495--22776586
27
3.2
27
65
14
67
41
5
13
40
1.67
22776577--22776619
16
2.6
17
77
7
52
44
9
2
44
1.49
22777510--22777548
19
1.9
19
85
10
51
51
10
0
38
1.36
22779092--22779117
3
8.7
3
100
0
52
65
0
0
34
0.93
22780876--22780901
13
2.0
13
100
0
52
61
0
0
38
0.96
22780937--22780975
11
3.4
12
79
13
55
64
0
0
35
0.94
22782572--22782613
17
2.6
16
82
14
50
23
2
2
71
1.10
22782570--22782613
5
8.2
5
85
7
52
22
2
2
72
1.07
22782566--22782607
22
2.1
19
86
13
57
19
4
2
73
1.12
22782908--22782951
7
6.1
7
82
12
54
18
2
0
79
0.83
22782912--22782970
6
9.5
6
76
12
57
20
1
0
77
0.85
22782912--22782970
21
2.8
21
80
10
50
20
1
0
77
0.85
22782905--22782987
27
3.1
26
81
16
82
21
2
0
75
0.91
22783967--22784005
20
2.0
20
85
10
53
48
12
2
35
1.55
22783967--22784006
21
2.0
20
85
5
53
50
12
2
35
1.54
22785378--22785407
15
1.9
15
93
6
51
83
0
16
0
0.65
22787631--22787690
27
2.2
27
78
0
66
51
11
3
33
1.55
22787757--22787817
26
2.3
26
88
5
88
54
14
1
29
1.50
22790358--22790425
18
3.8
17
72
24
59
32
4
0
63
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22792560--22792607
25
1.9
25
83
8
62
39
10
2
47
1.49
22792560--22792615
25
2.2
25
81
9
60
39
8
5
46
1.58
22793452--22793694
42
5.7
42
81
4
238
43
17
11
27
1.84
22794577--22794702
63
2.0
63
82
3
155
30
26
11
30
1.91
22795443--22795502
22
2.9
21
76
11
70
5
15
0
80
0.88
22802073--22802113
21
2.0
20
85
4
55
29
2
12
56
1.49
22802246--22802288
17
2.4
18
85
14
63
32
2
0
65
1.06
22804515--22804540
8
3.2
8
100
0
52
23
0
0
76
0.78
22804564--22804620
29
1.9
30
85
3
80
63
10
7
19
1.49
22805122--22805154
15
2.2
15
89
10
50
27
0
0
72
0.85
22805334--22805672
42
8.3
42
74
10
276
43
17
13
24
1.85
22805334--22805669
83
4.1
83
77
11
259
44
17
13
24
1.85
22805977--22806052
21
3.6
21
78
8
73
39
19
6
34
1.78
22806458--22806583
63
2.0
63
82
3
155
30
26
11
30
1.91
22813651--22813722
26
2.8
24
79
12
74
44
8
2
44
1.48
22813782--22813838
29
1.9
30
85
3
80
63
10
7
19
1.49
22819689--22819716
11
2.5
11
100
0
56
21
10
10
57
1.63
22821949--22822711
356
2.1
355
83
2
951
36
11
14
38
1.81
22830737--22830787
21
2.5
21
93
3
86
50
0
0
49
1.00
22837357--22837395
20
2.0
20
89
0
60
25
2
5
66
1.25
22837650--22837708
18
3.2
18
76
11
57
54
0
1
44
1.10
22837645--22837708
19
3.5
18
75
10
58
54
0
1
43
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22840527--22840569
19
2.3
19
87
0
59
18
0
2
79
0.85
22840537--22840574
19
2.1
19
85
5
51
23
0
5
71
1.07
22841192--22841240
16
3.0
17
82
8
66
32
6
6
55
1.49
22841271--22841334
20
3.2
19
84
4
74
31
7
7
53
1.58
22841352--22841394
3
14.0
3
95
4
77
34
0
0
65
0.93
22841369--22841504
53
2.6
53
88
4
186
30
2
8
58
1.41
22841463--22841541
21
3.8
21
72
11
72
31
6
10
51
1.60
22841457--22841552
41
2.3
41
80
7
113
32
6
9
52
1.59
22841707--22841746
21
1.9
21
90
10
64
30
5
10
55
1.54
22841700--22841762
20
3.1
19
80
13
72
33
6
11
49
1.64
22842025--22842064
20
2.0
21
90
5
64
40
2
7
50
1.44
22842086--22842162
26
3.0
26
85
10
106
36
3
10
49
1.56
22842091--22842157
13
5.2
13
73
7
64
38
4
10
46
1.59
22844231--22844271
22
1.9
21
90
5
64
68
0
0
31
0.90
22845680--22845734
27
2.0
27
86
6
76
61
5
0
32
1.19
22845680--22845726
14
3.4
14
76
5
60
61
6
0
31
1.21
22847874--22847914
17
2.4
17
87
0
55
51
0
0
48
1.00
22850243--22850272
2
15.0
2
100
0
60
50
0
0
50
1.00
22856827--22856886
26
2.3
26
80
2
68
48
0
1
50
1.11
22858623--22858663
8
5.9
7
78
21
50
68
0
0
31
0.90
22858624--22858663
20
2.0
20
100
0
80
70
0
0
30
0.88
22858712--22858764
26
2.0
28
82
14
67
43
0
3
52
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22858787--22858811
12
2.1
12
100
0
50
40
0
0
60
0.97
22860326--22860355
9
3.2
9
95
4
51
63
0
0
36
0.95
22860328--22860357
10
3.1
10
95
4
53
63
0
0
36
0.95
22860325--22860369
19
2.3
20
77
11
58
60
0
0
40
0.97
22861552--22861603
20
2.6
20
81
0
68
51
0
1
46
1.12
22861970--22862132
71
2.2
71
78
15
163
46
3
5
44
1.44
22862387--22862462
13
5.9
12
75
15
64
47
1
2
48
1.24
22862387--22862462
26
3.0
26
73
19
79
47
1
2
48
1.24
22864692--22864721
7
4.1
7
91
8
51
16
0
0
83
0.65
22868689--22868757
28
2.4
29
79
11
72
43
0
7
49
1.30
22881244--22881279
17
2.1
17
89
0
54
16
0
8
75
1.04
22881384--22881431
25
2.0
24
83
4
60
41
6
8
43
1.60
22897636--22897943
98
3.1
95
80
4
319
31
11
17
39
1.85
22897633--22897943
49
6.3
50
82
3
258
31
10
17
39
1.84
22897636--22897943
147
2.1
148
80
7
333
31
11
17
39
1.85
22898471--22898624
62
2.5
59
79
10
175
39
13
4
42
1.65
22899758--22899940
49
3.7
50
86
5
228
29
15
18
36
1.92
22900207--22900236
9
3.3
9
90
0
51
16
0
0
83
0.65
22900207--22900245
18
2.2
18
90
9
62
12
2
0
84
0.72
22901354--22901388
16
2.1
16
89
5
52
77
2
0
20
0.90
22906317--22906397
8
10.8
8
79
12
75
79
0
4
16
0.91
22906318--22906396
7
10.7
7
78
11
52
78
0
5
16
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22906317--22906367
9
5.6
9
80
11
59
80
0
1
17
0.81
22906317--22906408
37
2.5
37
84
10
118
79
0
5
15
0.91
22906335--22906408
14
5.2
14
84
9
96
79
0
6
13
0.91
22906313--22906408
29
3.2
29
81
16
117
78
0
6
15
0.95
22906317--22906389
36
2.0
35
89
5
110
79
0
4
16
0.88
22906313--22906408
44
2.2
43
84
5
129
78
0
6
15
0.95
22906915--22906953
19
2.1
19
85
0
51
53
2
25
17
1.56
22907790--22908113
89
3.7
85
79
7
321
25
12
16
44
1.83
22907883--22908177
86
3.4
85
79
4
274
27
12
16
44
1.83
22907779--22908109
43
7.7
43
77
4
272
25
12
16
45
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147