Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  143  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26546676--26546715
20
2.1
19
95
4
71
20
52
0
27
1.46
26547538--26547584
24
2.0
24
83
8
60
55
0
2
42
1.12
26551653--26551696
19
2.4
19
88
3
63
27
0
4
68
1.09
26554978--26555004
14
1.9
14
100
0
54
77
0
0
22
0.76
26555570--26555605
18
2.0
18
94
0
63
8
44
16
30
1.77
26555669--26555719
26
2.0
26
100
0
102
15
11
19
52
1.73
26555796--26555836
16
2.6
16
92
0
64
65
0
4
29
1.13
26555803--26555844
21
2.0
21
85
4
57
66
0
2
30
1.04
26555866--26555957
29
3.1
29
79
16
91
55
1
0
43
1.07
26555866--26555957
31
3.1
30
80
10
100
55
1
0
43
1.07
26558081--26558115
12
3.0
12
87
8
54
57
0
0
42
0.99
26558304--26558343
19
2.0
21
90
9
66
27
5
0
67
1.11
26559692--26559736
18
2.3
20
85
11
67
62
0
6
31
1.21
26559705--26559740
14
2.4
16
90
9
58
61
0
8
30
1.26
26559815--26559873
26
2.3
26
81
0
73
50
0
1
47
1.11
26590192--26590234
12
3.4
13
78
15
54
53
0
0
46
1.00
26590543--26590638
29
3.2
29
85
8
131
43
3
1
52
1.24
26590551--26590663
31
3.7
31
85
3
151
44
2
1
51
1.26
26591154--26591221
25
2.7
25
79
9
84
36
0
1
61
1.05
26591169--26591214
13
4.2
11
76
17
51
30
0
2
67
1.03
26591184--26591227
20
2.3
19
84
4
52
38
2
0
59
1.10
26591990--26592047
23
2.4
24
80
13
66
58
1
0
39
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26592556--26592588
11
3.0
11
87
12
50
72
0
0
27
0.85
26592737--26592762
2
13.0
2
100
0
52
50
0
0
50
1.00
26593021--26593063
19
2.2
20
87
4
61
0
27
6
65
1.18
26603345--26603434
44
2.0
44
95
0
162
24
23
5
46
1.73
26608738--26608790
28
1.9
27
84
3
70
3
15
7
73
1.20
26614110--26614171
30
2.1
29
84
6
79
37
4
6
51
1.49
26614653--26614683
16
1.9
16
93
0
53
48
38
3
9
1.52
26621243--26621267
13
1.9
13
100
0
50
68
0
0
32
0.90
26621694--26621722
1
29.0
1
100
0
58
100
0
0
0
0.00
26628758--26628821
30
2.1
30
91
5
103
18
25
15
40
1.90
26629202--26629239
18
2.1
19
85
5
51
81
2
7
7
0.96
26629462--26629519
29
2.1
28
87
12
84
51
0
0
48
1.00
26629793--26629826
13
2.7
12
90
9
50
55
0
0
44
0.99
26629999--26630056
27
2.1
28
90
3
91
36
1
0
62
1.06
26630179--26630221
14
3.0
15
86
6
54
48
0
0
51
1.00
26630268--26630294
14
1.9
14
100
0
54
62
0
0
37
0.95
26630579--26630647
33
2.1
31
80
15
77
57
0
2
39
1.13
26630601--26630667
33
2.1
32
86
13
93
53
0
1
44
1.09
26637007--26637070
30
2.1
30
94
0
110
17
26
15
40
1.89
26638023--26638047
2
12.5
2
100
0
50
52
0
0
48
1.00
26639009--26639097
44
2.0
44
93
0
151
22
28
14
34
1.93
26646049--26646076
13
2.2
13
100
0
56
75
25
0
0
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26647860--26647903
23
1.9
23
90
9
72
43
0
0
56
0.99
26647814--26647898
34
2.4
34
77
16
84
37
0
1
61
1.04
26647857--26647908
25
2.1
24
86
10
70
44
0
0
55
0.99
26648963--26649008
24
1.9
24
86
8
67
52
4
0
43
1.21
26657888--26657916
6
4.8
6
100
0
58
17
17
48
17
1.82
26659687--26659718
2
16.0
2
93
0
55
50
0
3
46
1.17
26661077--26661129
16
3.2
17
72
25
51
62
0
0
37
0.96
26661698--26661765
30
2.2
32
84
12
88
50
4
2
42
1.37
26666702--26666768
14
4.5
15
72
9
57
38
1
0
59
1.06
26667379--26667445
24
2.8
24
81
4
73
40
0
7
52
1.30
26667434--26667501
28
2.4
27
78
16
66
48
1
4
45
1.31
26667487--26667545
21
2.7
21
77
17
57
37
5
0
57
1.21
26667492--26667545
23
2.5
21
79
8
56
35
5
0
59
1.21
26668282--26668327
20
2.3
20
84
0
65
65
0
0
34
0.93
26670142--26670221
33
2.5
32
86
9
110
55
0
0
45
0.99
26674181--26674260
42
1.9
42
92
0
133
43
15
8
32
1.77
26682761--26682789
4
7.5
4
92
7
51
72
0
0
27
0.85
26683827--26683856
15
1.9
16
93
6
53
13
6
6
73
1.24
26683924--26683978
26
2.1
27
83
10
69
30
9
1
58
1.40
26684229--26684277
12
4.1
12
72
0
53
51
2
0
46
1.12
26684235--26684285
24
2.1
24
88
0
75
52
1
0
45
1.12
26684267--26684308
15
2.9
14
89
10
66
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26685050--26685131
12
6.8
12
71
14
62
67
0
1
31
0.99
26689216--26689256
11
3.7
11
76
23
50
60
0
0
39
0.96
26689218--26689260
21
2.0
22
86
9
61
65
0
0
34
0.93
26690280--26690374
9
10.7
9
68
22
58
61
2
2
34
1.20
26690279--26690339
16
3.6
16
70
12
59
62
1
1
34
1.15
26690316--26690407
35
2.6
33
80
15
105
60
1
3
34
1.20
26690356--26690432
26
3.0
25
79
7
82
63
1
3
31
1.20
26690562--26690634
19
3.8
20
77
12
73
49
5
2
42
1.40
26690688--26690758
28
2.5
28
80
14
83
64
4
1
29
1.20
26690793--26690837
20
2.2
20
92
0
72
40
0
4
55
1.20
26700483--26700510
12
2.3
12
100
0
56
0
10
35
53
1.36
26700506--26700536
3
10.3
3
92
0
53
0
32
29
38
1.57
26702110--26702336
78
3.0
77
76
13
204
22
30
11
34
1.90
26703529--26703578
24
2.1
23
82
14
57
44
0
2
54
1.11
26703922--26703978
24
2.4
24
86
11
82
61
0
0
38
0.96
26711892--26711937
24
1.9
24
86
0
65
30
4
2
63
1.26
26714846--26714927
43
1.9
43
97
0
155
39
7
7
46
1.60
26714931--26714982
14
3.3
15
75
17
52
48
1
5
44
1.38
26715042--26715085
11
3.8
11
77
11
52
34
0
0
65
0.93
26715042--26715099
24
2.4
24
82
0
71
32
1
1
63
1.14
26715042--26715087
5
9.2
5
80
17
51
34
0
0
65
0.93
26719482--26719787
152
2.0
152
87
3
447
33
12
19
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26724850--26724935
28
2.9
30
79
10
88
47
1
1
50
1.16
26724848--26724925
30
2.5
30
81
8
86
44
1
1
52
1.17
26725182--26725229
20
2.6
19
77
9
55
16
14
4
64
1.43
26729724--26729771
12
4.0
12
83
0
60
6
18
35
39
1.76
26729721--26729770
24
2.1
24
88
0
73
6
20
34
40
1.77
26731986--26732075
29
3.1
30
82
7
105
50
1
1
47
1.15
26732159--26732225
29
2.4
28
82
9
75
52
1
0
46
1.09
26738588--26738643
28
2.0
28
89
0
85
48
17
8
25
1.76
26747760--26747797
12
2.9
14
80
15
53
36
0
7
55
1.29
26748717--26748773
11
4.9
11
75
12
51
31
3
0
64
1.10
26748688--26748757
24
3.0
23
79
10
61
32
1
1
64
1.11
26748729--26748762
15
2.2
16
89
5
52
32
5
0
61
1.20
26751759--26751813
30
1.9
29
85
10
78
60
0
10
29
1.31
26754816--26754850
18
1.9
18
100
0
70
14
40
11
34
1.82
26757051--26757121
35
2.0
35
97
0
133
28
7
30
33
1.84
26762383--26762412
15
2.0
15
100
0
60
26
40
20
13
1.89
26763838--26763883
23
2.0
23
91
0
74
45
2
2
50
1.26
26773270--26773304
17
2.0
18
94
5
63
51
8
0
40
1.33
26777558--26777598
8
5.2
8
85
2
57
58
0
0
41
0.98
26777562--26777612
26
2.0
24
85
7
66
60
0
0
39
0.97
26796634--26796662
14
2.1
14
93
6
51
55
0
0
44
0.99
26798703--26798735
16
2.1
16
94
0
57
36
12
0
51
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26799202--26799247
20
2.2
20
84
7
56
30
0
4
65
1.12
26799664--26799692
3
9.7
3
100
0
58
65
0
0
34
0.93
26801743--26801779
2
18.5
2
100
0
74
48
0
0
51
1.00
26805820--26805856
11
3.4
11
92
0
65
29
0
16
54
1.43
26805820--26805872
22
2.5
22
90
3
81
30
0
16
52
1.44
26805898--26806030
65
2.0
66
86
4
189
51
7
12
28
1.66
26806614--26806692
24
3.2
25
76
5
81
43
10
29
17
1.82
26806584--26806692
25
4.4
24
68
14
69
43
10
29
17
1.82
26806584--26806695
49
2.3
50
78
4
129
41
9
29
18
1.83
26807028--26807148
52
2.3
52
84
7
147
45
5
18
30
1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147