genome.fa.s445.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  97  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17848934--17849106	71	2.4	70	83	8	192	15	17	15	51	1.77
17848981--17849172	36	5.4	35	72	10	106	17	17	13	52	1.75
17849051--17849210	70	2.3	69	79	5	158	19	15	11	53	1.73
17849196--17849264	35	2.1	34	86	8	97	17	15	13	53	1.73
17849599--17849732	6	21.0	6	76	17	110	78	14	2	4	1.01
17849601--17849746	40	3.9	38	66	22	62	78	13	4	4	1.03
17849600--17849732	13	10.3	12	72	21	85	78	14	2	4	1.00
17850731--17850997	144	1.8	145	85	2	376	30	14	13	41	1.84
17852583--17852616	3	11.3	3	100	0	68	32	0	0	67	0.91
17854235--17854287	25	2.1	25	86	6	72	16	20	9	52	1.71
17855831--17855933	32	3.3	32	72	8	104	32	18	19	30	1.96
17855837--17855928	29	3.1	29	74	9	85	32	17	19	30	1.95
17855809--17855928	61	2.0	61	84	0	159	35	17	17	30	1.93
17855944--17856004	22	2.8	22	89	0	77	29	21	22	26	1.99
17855972--17856190	108	2.0	108	90	1	341	36	16	12	33	1.87
17856296--17856948	65	10.0	64	74	9	349	34	18	17	29	1.94
17856296--17856948	33	20.0	31	74	9	344	34	18	17	29	1.94
17856900--17856962	33	1.9	32	87	3	90	42	19	12	25	1.86
17857024--17857083	31	1.9	31	83	6	77	20	21	13	45	1.85
17857513--17857598	16	4.9	18	75	16	74	69	3	0	26	1.04
17857542--17857566	12	2.1	12	100	0	50	60	0	0	40	0.97
17858668--17858743	27	2.9	25	79	11	64	50	21	9	19	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17859646--17860333	345	2.0	345	97	0	1304	39	14	13	32	1.85
17860730--17861146	144	2.9	144	79	5	389	40	14	13	30	1.86
17865533--17865573	20	2.0	20	90	9	66	29	7	14	48	1.71
17868998--17869045	18	2.6	18	84	12	62	45	6	12	35	1.67
17876503--17876557	27	2.0	28	85	7	76	14	21	21	41	1.89
17886911--17886939	15	2.0	15	93	6	51	17	34	0	48	1.47
17894470--17894519	23	2.2	23	100	0	100	38	12	20	30	1.88
17895904--17896026	32	3.8	32	75	6	106	39	4	6	49	1.47
17900511--17900655	7	22.3	7	69	13	69	44	35	2	17	1.60
17900512--17900624	13	8.6	13	68	13	61	46	35	1	16	1.58
17900512--17900608	20	5.0	19	71	14	65	45	35	2	17	1.60
17900637--17900676	19	2.2	18	86	4	53	47	40	0	12	1.41
17903594--17903730	40	3.4	40	79	3	159	37	14	14	32	1.87
17903619--17903745	40	3.2	38	80	8	130	34	13	16	35	1.88
17904038--17904079	20	2.2	20	91	4	68	26	4	11	57	1.54
17905856--17905881	7	3.7	7	100	0	52	30	0	0	69	0.89
17908205--17908254	22	2.4	21	83	6	57	80	4	4	12	1.00
17908290--17908322	17	1.9	17	88	11	50	63	6	3	27	1.32
17908406--17908451	7	6.6	7	81	18	60	73	2	2	21	1.04
17908549--17908623	17	4.4	17	76	17	66	70	2	6	20	1.22
17908793--17908847	27	2.0	26	83	13	67	25	3	7	63	1.37
17908934--17909021	8	10.8	8	72	12	54	23	1	7	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17908930--17908982	18	2.9	19	83	10	67	28	0	5	66	1.15
17911360--17911402	15	2.8	15	92	3	68	55	0	0	44	0.99
17911360--17911403	16	2.9	15	83	13	54	54	0	0	45	0.99
17911718--17911742	4	6.2	4	100	0	50	24	0	0	76	0.80
17912404--17912436	15	2.3	15	89	5	50	36	3	0	60	1.12
17913682--17914479	399	2.0	397	93	1	1375	39	9	5	45	1.60
17914527--17914560	17	2.1	17	88	5	52	2	14	0	82	0.79
17915759--17915811	20	2.5	21	84	6	72	56	15	5	22	1.60
17915884--17915935	25	2.0	25	85	7	68	48	11	5	34	1.63
17915883--17915964	23	3.5	23	78	6	76	52	12	4	30	1.59
17915916--17915977	23	2.7	23	79	16	67	58	11	1	29	1.42
17915924--17915983	24	2.5	24	81	15	70	56	13	1	28	1.47
17915918--17915988	24	3.0	23	75	19	65	57	11	1	29	1.42
17915918--17915989	25	3.0	24	74	13	67	58	11	1	29	1.41
17916495--17916547	22	2.5	22	96	3	99	47	0	0	52	1.00
17918276--17918336	32	1.9	32	86	6	88	52	6	3	37	1.44
17920666--17920707	22	1.9	22	85	0	57	54	0	2	42	1.13
17922161--17922208	19	2.5	19	86	10	62	47	2	0	50	1.12
17922161--17922207	16	2.7	17	83	9	51	48	2	0	48	1.13
17922270--17922295	3	8.7	3	100	0	52	34	0	0	65	0.93
17925646--17925696	25	2.0	25	81	7	59	43	21	3	31	1.71
17925747--17925792	22	2.1	22	87	0	65	45	23	2	28	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17930515--17930552	20	1.9	20	84	10	51	39	26	5	28	1.78
17937567--17937613	24	2.1	24	88	11	73	31	25	17	25	1.97
17942621--17942670	26	1.9	26	84	8	66	42	2	30	26	1.66
17944692--17944734	22	2.0	22	90	0	68	32	6	4	55	1.47
17948833--17948878	23	2.0	23	86	0	65	39	13	10	36	1.79
17948958--17949213	139	1.8	138	82	2	325	33	18	14	33	1.91
17949231--17949269	20	1.9	21	89	5	62	33	15	23	28	1.95
17949233--17949283	20	2.4	20	80	9	57	31	21	17	29	1.96
17949533--17949574	23	1.9	22	85	9	59	38	14	19	28	1.90
17949461--17949641	78	2.3	78	80	6	181	28	19	19	32	1.96
17950066--17950203	36	3.8	36	88	1	125	39	12	14	33	1.83
17956802--17956832	3	10.3	3	92	0	53	70	0	0	29	0.87
17956801--17956838	12	3.2	12	88	0	58	71	0	2	26	1.00
17958386--17958445	5	11.6	5	80	15	52	75	6	1	16	1.10
17958652--17958706	25	2.2	24	84	6	74	67	10	0	21	1.21
17958669--17958740	18	4.4	16	73	19	60	63	9	1	25	1.33
17959288--17959376	33	2.7	33	75	8	90	42	11	20	25	1.85
17959669--17959772	43	2.4	45	78	4	122	41	16	9	32	1.81
17959669--17959778	44	2.5	44	79	4	123	44	15	9	30	1.77
17959752--17959832	23	3.4	23	73	10	74	46	11	3	38	1.57
17961287--17961335	25	2.0	25	84	8	64	4	18	2	75	1.06
17961298--17961348	23	2.1	25	85	7	70	1	15	3	78	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17965338--17965393	6	8.7	6	83	11	51	78	1	1	17	0.92
17965330--17965395	34	2.0	33	88	8	98	77	3	1	18	0.98
17965338--17965411	13	5.8	12	72	21	53	78	2	2	16	0.98
17965373--17965418	24	1.9	24	82	8	58	80	2	6	10	0.98
17965969--17966045	21	3.5	21	67	15	57	35	14	6	44	1.71
17971689--17971720	15	2.1	15	94	0	55	84	0	0	15	0.63
17971689--17971721	8	4.2	8	88	7	50	84	0	0	15	0.61
17971702--17971749	25	2.0	25	83	4	62	72	10	0	16	1.10
17971748--17971784	12	3.1	12	88	0	56	62	0	8	29	1.24
17973388--17973461	12	6.2	12	69	20	57	21	4	21	52	1.63
17973395--17973432	20	1.9	20	100	0	76	23	5	18	52	1.65
17973407--17973498	27	3.5	26	84	11	114	26	4	15	54	1.59
17973407--17973498	26	3.5	25	80	14	105	26	4	15	54	1.59
17973944--17973983	20	2.0	20	95	0	71	52	5	7	35	1.51
17973970--17974094	65	1.9	65	86	0	178	38	10	12	38	1.78
17976940--17976989	19	2.6	20	75	18	52	12	2	8	78	1.05
17982074--17982381	153	2.0	153	92	1	510	39	15	11	33	1.83
17982684--17983953	162	7.9	162	77	8	1052	43	15	9	31	1.79
17982442--17984030	323	4.9	321	77	7	1361	43	14	9	31	1.78
17982367--17984030	485	3.5	479	77	8	1463	43	14	9	32	1.77
17985077--17985123	13	3.5	13	85	2	58	55	12	4	27	1.56
17987347--17987390	21	2.1	21	83	8	54	34	22	9	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17997933--17998013	42	1.9	42	85	5	110	32	17	13	37	1.89
17998686--17998817	18	7.4	18	76	7	110	28	17	12	41	1.85
17998597--17998817	36	6.4	36	77	7	145	28	17	13	39	1.88
17998619--17998924	17	17.7	17	72	10	174	32	14	13	39	1.86
17998674--17998834	36	4.6	35	84	3	137	29	17	11	41	1.84
17998936--17999014	18	4.3	18	78	1	77	40	24	3	31	1.73
17999031--17999110	17	4.6	17	76	3	88	33	16	13	36	1.88
17999026--17999110	35	2.5	34	88	1	116	34	16	12	36	1.87
17999101--17999147	17	2.7	18	83	9	53	38	12	6	42	1.69
17999048--17999128	34	2.3	35	79	8	94	35	16	11	37	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147