genome.fa.s445.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  58  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11148706--11148767	23	2.7	24	75	7	65	30	4	1	62	1.25
11162047--11162132	9	9.2	9	75	7	64	2	20	1	75	0.98
11162042--11162121	19	4.2	19	77	6	72	3	20	1	75	1.03
11164631--11164666	15	2.2	17	90	9	58	2	16	0	80	0.83
11164641--11164684	15	3.0	15	83	6	54	0	22	0	77	0.77
11164649--11164708	19	3.1	19	74	11	68	3	23	0	73	0.98
11164636--11164738	29	3.7	27	73	17	68	1	25	1	70	1.07
11164652--11164727	39	1.9	38	89	5	107	2	26	1	69	1.09
11169071--11169095	13	1.9	13	100	0	50	44	0	0	56	0.99
11170308--11170421	59	1.9	59	89	3	176	22	15	9	51	1.72
11172816--11172852	14	2.6	14	91	0	56	35	5	0	59	1.20
11172931--11173038	43	2.5	43	92	6	173	34	5	2	57	1.36
11175841--11175917	27	3.0	26	72	9	77	54	0	0	45	0.99
11176060--11176111	6	8.5	6	80	19	54	67	0	1	30	1.02
11176031--11176111	12	6.9	11	71	18	56	65	0	1	33	1.01
11176063--11176104	8	5.1	8	78	16	50	64	0	2	33	1.07
11176063--11176111	25	2.0	25	88	8	73	67	0	2	30	1.02
11177937--11177983	14	3.6	13	80	8	51	48	4	0	46	1.21
11178112--11178148	13	3.0	12	88	7	56	37	0	0	62	0.96
11194502--11194554	18	2.8	19	80	8	63	66	0	3	30	1.10
11200254--11200298	17	2.6	18	82	3	65	20	6	6	66	1.38
11200254--11200305	17	3.0	17	78	13	61	26	5	7	59	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11206388--11206430	18	2.3	19	80	15	54	65	0	2	32	1.06
11208180--11208245	19	3.4	19	78	10	62	4	22	0	72	1.02
11210718--11210763	23	2.0	24	87	8	69	0	23	0	76	0.79
11210733--11210778	19	2.5	18	82	6	56	4	23	0	71	1.03
11210733--11210806	39	1.9	40	86	8	109	2	27	0	70	1.01
11210737--11210824	37	2.4	37	79	9	90	3	25	1	70	1.10
11215145--11215183	21	2.0	21	85	10	55	25	10	2	61	1.41
11216776--11216889	59	1.9	59	83	3	149	22	13	14	50	1.77
11220532--11220568	14	2.6	14	91	0	56	35	5	0	59	1.20
11220646--11220745	38	2.5	42	85	11	145	35	5	3	57	1.36
11220646--11220746	43	2.5	40	87	9	143	35	4	2	56	1.36
11223875--11224375	254	2.0	251	80	9	572	40	12	6	39	1.69
11225141--11225291	74	2.1	73	96	1	275	37	9	7	44	1.67
11236157--11236203	22	2.1	22	84	7	60	38	0	2	59	1.09
11239018--11239203	92	2.0	92	98	0	363	40	22	10	26	1.86
11242894--11242967	31	2.4	31	86	6	96	20	13	25	40	1.89
11252849--11252899	21	2.5	20	83	6	57	31	0	7	60	1.25
11254299--11254325	14	1.9	14	100	0	54	29	7	11	51	1.64
11258061--11258103	18	2.3	19	80	15	54	65	0	2	32	1.06
11258183--11258213	16	1.9	16	93	0	53	29	9	19	41	1.83
11260318--11260346	2	14.5	2	100	0	58	48	0	0	51	1.00
11261819--11261897	31	2.5	32	84	10	101	20	12	26	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11266195--11266795	156	3.8	156	96	1	1076	38	17	14	29	1.90
11266882--11266939	5	11.6	5	89	7	91	0	36	43	20	1.52
11267159--11267203	19	2.4	19	88	0	63	24	22	31	22	1.99
11267254--11267327	31	2.4	31	88	6	105	27	24	25	22	2.00
11267643--11267676	11	2.9	12	86	8	52	79	0	0	20	0.73
11267901--11267937	13	3.1	13	81	18	53	83	0	0	16	0.64
11267974--11268031	20	3.0	20	89	5	91	20	29	31	18	1.97
11268147--11268234	1	88.0	1	78	0	77	5	0	6	87	0.67
11268134--11268232	15	6.3	16	79	9	98	7	1	7	84	0.81
11268140--11268217	41	1.9	41	89	5	122	7	0	7	84	0.77
11268242--11268927	42	17.0	42	87	9	868	37	23	17	21	1.94
11268242--11268927	82	8.5	81	86	9	856	37	23	17	21	1.94
11270558--11270584	1	27.0	1	100	0	54	0	0	0	100	0.00
11273833--11274434	156	3.8	156	96	2	1087	38	18	14	28	1.90
11274462--11274503	12	2.9	15	86	13	54	85	4	0	9	0.72
11274480--11274505	1	26.0	1	100	0	52	100	0	0	0	0.00
11274513--11274567	15	3.5	16	85	9	69	1	34	43	20	1.62
11274525--11274567	5	8.6	5	85	10	61	0	34	44	20	1.52
11274787--11274831	19	2.4	19	88	0	63	24	22	31	22	1.99
11274892--11274964	31	2.4	31	90	4	112	27	24	26	21	2.00
11275280--11275313	11	2.9	12	86	8	52	79	0	0	20	0.73
11275609--11275666	20	3.0	20	89	5	91	20	29	31	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11281880--11281914	11	3.0	12	83	8	54	45	0	0	54	0.99
11281874--11281912	11	3.4	11	82	10	51	46	0	0	53	1.00
11283441--11283483	18	2.3	19	80	15	54	65	0	2	32	1.06
11285245--11285285	21	2.0	21	85	9	57	0	17	0	82	0.66
11285260--11285353	37	2.7	34	77	12	93	4	23	2	70	1.16
11286482--11286840	191	1.9	191	89	0	565	39	10	11	38	1.75
11286647--11288793	620	3.5	610	95	2	3801	40	14	14	31	1.86
11288694--11289034	174	1.9	176	96	1	632	28	19	21	30	1.98
11293567--11293616	23	2.2	24	78	10	59	48	0	2	50	1.12
11293963--11294076	59	1.9	59	90	0	183	21	14	13	51	1.75
11298479--11298517	14	2.7	15	84	8	53	30	7	0	61	1.24
11300720--11300747	3	9.3	3	100	0	56	32	0	0	67	0.91
11301936--11302009	27	2.9	26	72	9	73	48	0	0	51	1.00
11302148--11302206	6	9.2	6	79	17	57	66	0	1	32	1.02
11302119--11302199	12	6.9	11	71	18	56	65	0	1	33	1.01
11302151--11302201	25	2.0	25	88	7	77	66	0	1	31	1.03
11302153--11302205	12	4.2	13	83	7	65	67	0	1	30	1.01
11305364--11305450	23	3.5	24	72	21	81	45	0	1	52	1.08
11305383--11305460	27	3.1	25	75	15	88	50	0	1	48	1.09
11305438--11305495	26	2.3	25	79	5	73	46	3	1	48	1.29
11305579--11305634	12	4.7	12	78	8	60	64	0	0	35	0.94
11305610--11305668	6	9.2	6	78	10	55	67	1	0	30	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11305562--11305643	40	2.0	41	84	11	107	60	1	0	37	1.04
11305612--11305663	25	2.2	23	86	6	68	69	1	0	28	0.99
11307707--11307767	20	3.3	18	73	13	52	45	0	0	54	1.00
11325841--11326336	58	8.4	57	81	8	500	36	13	7	42	1.74
11325841--11326352	119	4.3	119	86	5	677	36	14	7	42	1.73
11326369--11326457	5	16.8	5	73	19	58	77	1	5	15	1.01
11326369--11326457	17	5.6	16	77	15	87	77	1	5	15	1.01
11326383--11326457	23	3.4	21	77	18	64	77	1	6	14	1.04
11326369--11326446	32	2.5	32	83	6	97	76	1	6	15	1.04
11326474--11326512	3	13.0	3	100	0	78	66	0	0	33	0.92
11327039--11327091	26	2.0	26	81	0	61	56	13	3	26	1.54
11327398--11327436	18	2.2	18	85	0	51	61	7	5	25	1.44
11327448--11327514	28	2.4	28	78	14	75	61	4	2	31	1.31
11327504--11327539	16	2.3	15	90	4	54	69	2	5	22	1.22
11327549--11327587	18	2.2	18	90	0	60	71	2	0	25	0.98
11327786--11328087	42	7.0	43	82	10	325	37	21	16	25	1.93
11327786--11328087	87	3.5	86	80	12	318	37	21	16	25	1.93
11328068--11328206	40	3.4	40	74	8	120	44	17	12	25	1.84
11327783--11328211	83	5.1	83	77	10	284	38	20	15	24	1.92
11328030--11328213	41	4.5	40	74	11	140	42	18	13	25	1.87
11330052--11330110	31	1.9	31	89	6	93	5	16	0	77	0.93
11330054--11330145	39	2.4	38	81	13	100	6	16	0	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11330071--11330136	20	3.1	22	82	10	84	4	16	0	78	0.90
11330063--11330136	11	7.2	10	74	15	62	5	17	0	77	0.96
11330081--11330146	20	3.2	20	73	18	64	6	18	0	75	1.00
11334040--11334482	175	2.6	175	89	4	659	35	13	7	42	1.73
11334040--11334482	58	7.7	58	85	4	549	35	13	7	42	1.73
11334494--11334581	5	17.0	5	75	21	76	77	0	5	17	0.96
11334494--11334581	23	4.0	21	79	18	90	77	0	5	17	0.96
11334498--11334581	6	13.7	6	72	18	66	77	0	5	16	0.96
11334494--11334581	17	5.3	16	78	13	90	77	0	5	17	0.96
11334603--11334644	3	14.0	3	90	9	68	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147