genome.fa.s445.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  4  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626745--626799	19	2.9	18	78	7	56	29	7	0	63	1.21
626736--626787	19	2.7	19	74	14	52	28	5	1	63	1.28
628962--629008	18	2.4	19	82	10	51	42	0	2	55	1.12
632593--632640	21	2.3	21	96	3	89	16	20	29	33	1.95
648642--648793	64	2.4	64	93	2	252	34	16	23	25	1.95
650377--650415	19	2.2	19	86	9	55	28	0	5	66	1.12
651069--651102	17	2.0	17	94	0	59	20	0	41	38	1.53
653573--653601	14	2.1	14	93	6	51	17	0	0	82	0.66
653868--653899	13	2.5	13	100	0	64	43	6	18	31	1.75
656119--656156	16	2.4	16	86	4	51	63	0	0	36	0.95
659596--659620	3	8.3	3	100	0	50	32	0	0	68	0.90
664795--664838	5	8.6	5	85	5	61	22	2	0	75	0.92
664860--664908	17	2.9	16	78	3	53	53	4	2	40	1.32
667117--667235	61	2.0	60	86	1	166	48	5	6	39	1.51
667245--667288	11	4.0	11	81	0	52	45	4	13	36	1.64
667246--667289	22	2.0	22	95	0	79	43	4	15	36	1.68
667457--667502	22	2.1	22	84	8	58	43	8	8	39	1.66
667560--667633	22	3.4	22	81	7	87	43	5	8	43	1.57
667565--667655	44	2.1	44	82	0	110	45	6	7	40	1.59
668024--668342	22	14.4	22	70	12	91	47	5	8	38	1.57
668024--668122	44	2.2	44	80	8	112	47	6	6	40	1.53
668060--668211	67	2.3	66	82	8	168	46	5	9	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668414--668518	22	4.8	22	79	11	90	40	3	13	41	1.62
668403--668493	44	2.1	44	81	4	103	45	4	12	38	1.62
668529--668765	22	10.8	22	75	6	149	42	7	10	40	1.66
668529--668765	66	3.6	66	74	5	185	42	7	10	40	1.66
668777--668927	70	2.1	71	85	4	198	38	5	11	44	1.65
669376--669449	34	2.2	33	79	11	78	35	10	14	39	1.82
669562--669614	21	2.7	20	77	13	56	47	11	5	35	1.63
669594--669752	42	3.8	42	78	7	151	46	8	8	35	1.66
669594--669748	21	7.3	21	67	12	102	47	9	7	35	1.64
669765--669916	74	2.1	71	85	7	200	42	5	4	47	1.46
669890--669931	3	13.7	3	85	5	57	33	0	4	61	1.17
692457--692490	2	17.0	2	100	0	68	0	50	0	50	1.00
694045--694069	2	12.5	2	100	0	50	52	0	0	48	1.00
697743--698013	145	1.9	145	85	3	375	38	14	14	33	1.86
707486--707528	22	2.0	22	85	0	59	37	11	6	44	1.68
708697--708735	18	2.2	18	90	0	60	38	0	5	56	1.22
715157--715191	2	17.5	2	100	0	70	51	0	0	48	1.00
714987--715385	204	2.0	204	98	0	771	33	10	17	37	1.85
715361--715385	2	12.5	2	100	0	50	52	0	0	48	1.00
715493--715517	2	12.5	2	100	0	50	52	0	0	48	1.00
716084--716120	18	2.1	18	94	0	65	37	5	8	48	1.56
716126--716208	22	3.6	22	72	20	62	33	8	7	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716376--716502	22	5.9	22	75	10	109	38	8	2	50	1.46
716401--716511	43	2.6	43	80	1	132	38	9	1	50	1.45
716466--716523	22	2.7	21	81	5	62	39	10	3	46	1.55
716401--716538	65	2.2	63	80	6	152	37	8	2	50	1.48
716635--716676	22	1.9	22	90	0	66	33	7	4	54	1.49
716644--716721	22	3.5	22	80	0	84	34	10	5	50	1.59
716636--716742	44	2.4	44	79	0	115	34	10	4	50	1.57
717006--717082	22	3.5	20	71	15	55	38	10	3	46	1.56
717004--717191	44	4.3	44	75	6	157	35	7	6	50	1.57
717085--717186	22	4.6	22	76	0	78	35	6	7	50	1.58
717173--717197	7	3.6	7	100	0	50	28	0	0	72	0.86
717263--717385	22	5.7	22	73	9	83	43	8	2	45	1.48
717413--717462	22	2.3	21	80	16	57	28	4	4	64	1.30
717666--717719	11	4.9	11	81	0	72	37	1	3	57	1.27
717664--717728	22	3.0	22	88	0	94	36	4	4	53	1.42
717664--717728	11	5.9	11	79	0	67	36	4	4	53	1.42
717768--717970	22	9.3	21	70	8	102	37	9	3	48	1.53
717777--717869	44	2.1	43	84	2	114	37	8	3	50	1.49
717779--717905	65	1.9	66	86	10	181	38	8	4	48	1.55
718170--718258	35	2.5	35	82	10	110	28	3	1	67	1.14
718981--719015	3	11.7	3	93	0	61	28	0	2	68	1.04
719077--719304	58	4.1	56	74	12	197	45	7	10	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723972--724006	14	2.5	14	90	9	54	8	14	5	71	1.29
723982--724015	14	2.4	14	90	0	50	11	11	8	67	1.42
729342--729392	21	2.4	21	75	21	52	58	0	7	33	1.27
732480--732505	11	2.4	11	100	0	52	42	0	0	57	0.98
732534--732575	22	2.0	22	85	4	59	30	0	0	69	0.89
732540--732569	15	1.9	16	93	6	53	30	0	0	70	0.88
738142--738176	16	2.1	17	89	5	54	37	0	2	60	1.12
738141--738179	17	2.3	18	82	13	55	35	0	2	61	1.10
743412--743449	16	2.5	16	87	8	53	2	2	31	63	1.22
746064--746107	22	2.0	22	86	0	61	43	18	13	25	1.86
746858--746890	15	2.3	15	89	5	50	36	3	18	42	1.66
749267--749697	113	3.9	112	72	6	264	36	12	9	40	1.76
749246--749696	111	4.0	111	71	6	336	36	11	9	41	1.75
749599--749905	153	2.0	153	90	1	481	37	10	12	39	1.77
750622--750655	10	3.4	10	91	0	50	50	11	0	38	1.39
754737--754918	92	2.0	92	91	2	296	28	8	13	50	1.70
757059--757253	16	12.7	15	69	13	112	20	2	31	46	1.62
757487--757557	12	5.5	12	70	15	52	26	4	1	67	1.17
758289--758329	14	3.0	13	86	10	55	2	2	9	85	0.78
758289--758329	13	3.1	13	86	6	55	2	2	9	85	0.78
758289--758334	18	2.5	19	82	10	60	2	4	8	84	0.83
758703--758746	3	16.0	3	81	13	51	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761596--761677	41	2.0	41	88	4	121	37	6	18	37	1.76
773561--773618	30	2.1	27	81	18	66	39	5	1	53	1.33
773763--773816	25	2.1	26	82	3	65	37	3	3	55	1.35
774159--774198	20	2.0	20	85	9	55	60	0	0	40	0.97
774389--774427	13	3.1	12	85	10	51	15	0	0	84	0.62
775070--775131	25	2.5	26	78	7	74	58	0	4	37	1.20
775205--775283	31	2.6	32	76	15	85	46	3	5	44	1.43
775738--775778	20	2.0	21	85	4	57	46	0	0	53	1.00
776475--776506	16	2.0	16	93	0	55	53	0	0	46	1.00
780840--780877	18	2.1	19	90	5	60	39	0	0	60	0.97
780953--781035	5	15.8	5	69	14	51	55	3	2	38	1.30
780953--781035	30	2.6	32	84	7	107	55	3	2	38	1.30
781011--781040	12	2.5	12	94	0	51	50	0	3	46	1.18
785371--785435	30	2.2	30	82	0	76	33	10	21	33	1.88
788646--788687	3	14.3	3	87	5	59	66	0	4	28	1.12
798152--798230	37	2.1	37	95	0	140	35	8	8	46	1.66
798392--798439	24	2.0	24	95	0	87	41	10	4	43	1.58
813876--813922	22	2.1	23	84	4	60	36	8	4	51	1.52
820285--820310	2	13.0	2	100	0	52	50	0	50	0	1.00
823533--823565	2	16.5	2	100	0	66	51	0	0	48	1.00
824696--824736	19	2.1	20	90	4	66	39	0	0	60	0.96
824805--824978	57	3.0	56	84	5	213	50	4	4	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824900--824950	24	2.1	25	88	3	77	54	3	1	39	1.30
824909--824960	24	2.2	24	85	0	68	59	3	0	36	1.16
825706--825769	29	2.2	29	80	2	76	57	1	1	39	1.17
838098--838338	123	2.0	123	90	3	378	28	19	27	24	1.98
842912--842969	26	2.3	23	75	18	55	32	3	0	63	1.11
843448--843491	16	2.6	17	85	3	54	25	2	0	72	0.96
844817--844874	29	2.0	29	86	0	80	44	17	6	31	1.75
845402--845434	17	1.9	17	93	0	57	45	3	0	51	1.16
850009--850134	65	1.9	65	95	0	225	38	11	14	34	1.83
850014--850125	31	3.5	30	65	21	75	36	12	15	35	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147