genome.fa.s445.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  76  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14102255--14102411	52	3.0	52	86	0	224	26	22	8	42	1.81
14104829--14104879	26	2.0	26	84	0	66	45	33	7	13	1.73
14116011--14116035	13	1.9	13	100	0	50	80	0	0	20	0.72
14117259--14117296	2	19.5	2	89	5	60	47	0	0	52	1.00
14120815--14120845	14	2.2	14	94	0	53	22	9	0	67	1.19
14126555--14126628	37	2.0	37	100	0	148	32	29	8	29	1.86
14127588--14127627	3	13.3	3	100	0	80	32	0	0	67	0.91
14136987--14137020	16	2.1	16	94	0	59	8	2	0	88	0.62
14137250--14137297	19	2.5	19	75	0	51	79	10	0	10	0.95
14138356--14138420	21	3.0	21	77	4	67	44	1	12	41	1.51
14138681--14138741	22	2.8	21	75	9	59	49	6	4	39	1.50
14138771--14139071	22	13.7	22	71	8	166	46	7	9	36	1.65
14138771--14139071	44	6.9	44	74	7	227	46	7	9	36	1.65
14138873--14138938	23	2.9	22	80	6	69	53	6	7	33	1.54
14138918--14139001	43	1.9	44	85	2	116	52	5	7	34	1.53
14139428--14139519	22	4.2	22	72	8	71	51	3	8	36	1.49
14139408--14139523	44	2.6	44	80	2	108	47	5	8	38	1.57
14139438--14139525	22	4.0	22	73	5	88	50	2	7	39	1.44
14139438--14139541	22	4.7	23	75	4	81	49	3	7	39	1.50
14139459--14139544	44	2.0	44	83	0	109	48	5	6	38	1.54
14140097--14140140	3	15.0	3	95	4	81	65	0	0	34	0.93
14140101--14140140	20	2.0	20	100	0	80	65	0	0	35	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14140135--14140174	21	2.0	20	85	5	53	57	0	0	42	0.98
14140624--14140658	2	17.5	2	87	0	52	48	0	2	48	1.16
14150616--14151315	356	2.0	356	87	1	1028	36	13	12	37	1.82
14155355--14155408	3	18.0	3	100	0	108	66	0	0	33	0.92
14155407--14155461	3	18.3	3	100	0	110	32	0	0	67	0.91
14157622--14157649	2	14.0	2	100	0	56	50	0	50	0	1.00
14158865--14158894	14	2.1	15	93	6	53	20	10	26	43	1.83
14165062--14165094	7	4.7	7	100	0	66	54	15	0	30	1.41
14165839--14165895	30	1.9	29	82	10	71	15	8	5	70	1.31
14165875--14165946	13	5.8	12	73	15	58	23	5	1	69	1.17
14165874--14165949	25	3.2	23	75	17	66	23	5	1	69	1.16
14166925--14166973	26	1.9	25	87	4	71	26	8	2	63	1.34
14166946--14166979	17	1.9	18	88	5	52	29	11	5	52	1.61
14173405--14173447	22	1.9	23	85	4	61	83	0	9	6	0.80
14174305--14174364	6	9.7	6	75	13	50	63	0	0	36	0.95
14174308--14174370	22	2.9	22	80	4	83	63	0	0	36	0.95
14174308--14174362	16	3.7	16	79	15	57	61	0	0	38	0.96
14174306--14174370	12	5.7	12	76	12	57	64	0	0	35	0.94
14174611--14174672	24	2.6	25	77	15	76	24	16	20	38	1.92
14174950--14175204	45	5.7	45	78	4	221	39	9	9	40	1.71
14174916--14175204	133	2.2	135	84	4	363	38	9	10	41	1.72
14175050--14175131	22	3.7	22	75	12	78	39	7	10	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14175342--14175398	17	3.3	17	74	13	62	21	17	14	47	1.82
14175412--14175469	19	3.1	19	78	9	73	27	12	10	50	1.72
14175280--14175544	91	2.9	90	79	5	223	27	16	11	44	1.82
14177526--14177603	34	2.3	34	100	0	156	15	25	15	43	1.86
14179297--14179330	3	11.3	3	100	0	68	32	0	0	67	0.91
14184663--14184720	2	30.0	2	81	6	66	41	0	3	55	1.17
14185706--14185744	14	2.8	14	84	0	51	38	0	2	58	1.12
14185922--14185962	17	2.4	17	84	15	50	46	4	2	46	1.37
14186796--14186864	36	1.9	35	85	2	93	43	4	7	44	1.51
14189536--14189583	25	1.9	24	87	8	69	77	2	18	2	0.97
14189536--14189584	24	1.9	24	84	12	62	77	2	18	2	0.96
14202570--14202666	30	3.2	30	84	5	126	42	2	14	41	1.57
14203601--14204107	57	8.7	57	87	6	705	35	12	7	44	1.71
14203601--14204107	117	4.3	117	95	2	842	35	12	7	44	1.71
14204137--14204189	25	2.1	26	83	16	67	73	1	1	22	1.03
14204764--14204817	11	4.6	11	78	13	54	46	18	3	31	1.67
14205189--14205230	15	2.6	17	75	24	54	73	0	4	21	1.01
14205223--14205337	28	3.9	29	70	21	69	63	6	0	29	1.20
14206548--14206611	31	2.1	31	87	0	92	46	14	17	21	1.83
14207662--14207713	26	2.0	25	92	3	86	32	5	9	51	1.58
14213481--14213519	13	2.9	14	85	11	55	10	25	41	23	1.86
14215162--14215259	48	2.1	49	85	9	134	50	15	16	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14215310--14215397	34	2.6	34	78	8	81	45	17	20	17	1.86
14215032--14215397	173	2.1	163	80	11	387	45	14	18	22	1.85
14215377--14215877	109	4.6	109	87	3	677	45	14	20	19	1.85
14215377--14215657	35	7.8	36	68	14	141	45	15	20	18	1.86
14215448--14215836	38	10.7	36	67	15	133	44	13	21	20	1.85
14215378--14215877	218	2.3	218	89	2	747	45	14	20	19	1.85
14228356--14228386	16	1.9	16	93	0	53	19	0	35	45	1.51
14228380--14228407	14	2.0	14	100	0	56	7	0	42	50	1.30
14228399--14228435	14	2.6	14	86	4	56	18	0	35	45	1.50
14228342--14228440	50	2.0	51	84	7	132	16	0	34	49	1.46
14230874--14230912	18	2.2	18	86	13	55	43	7	10	38	1.67
14233247--14233326	13	6.2	13	76	0	61	16	5	20	58	1.56
14233493--14233526	3	11.0	3	93	6	59	32	0	0	67	0.91
14233450--14233554	39	2.8	39	77	12	94	29	2	0	66	1.12
14233900--14233931	17	1.9	16	93	6	55	21	0	0	78	0.76
14235901--14235957	12	4.7	12	78	4	60	56	0	3	40	1.17
14235994--14236360	183	2.0	182	88	3	549	34	14	14	37	1.87
14237293--14237318	10	2.6	10	100	0	52	61	0	0	38	0.96
14237746--14237770	11	2.3	11	100	0	50	36	0	0	64	0.94
14237802--14238231	238	1.8	238	81	9	536	35	11	7	45	1.69
14238408--14238441	13	2.6	13	85	0	50	5	26	38	29	1.80
14238457--14238493	19	1.9	19	88	0	56	2	18	43	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14239386--14239426	21	2.0	20	85	4	55	14	2	4	78	1.03
14239625--14240267	49	13.2	48	85	5	803	36	22	13	27	1.92
14239598--14240267	97	6.9	95	85	4	824	35	22	14	27	1.92
14240519--14240668	73	2.0	74	98	1	293	23	23	8	45	1.79
14241084--14241117	8	4.2	8	96	0	50	5	5	0	88	0.64
14249698--14249738	22	1.9	21	85	14	57	7	2	9	80	0.99
14250495--14250942	237	1.9	234	82	7	532	35	10	8	45	1.70
14251635--14251686	20	2.4	22	84	12	63	17	25	0	57	1.40
14252084--14252127	20	2.2	20	84	8	54	22	4	4	68	1.27
14253062--14253093	2	16.0	2	100	0	64	50	0	0	50	1.00
14253379--14253414	2	18.0	2	100	0	72	50	0	0	50	1.00
14263866--14263901	18	2.0	18	94	0	63	33	13	5	47	1.67
14268890--14268942	27	1.9	28	92	3	90	32	22	3	41	1.72
14271897--14271925	5	6.0	5	96	4	51	0	17	0	82	0.66
14281755--14281842	42	2.0	43	82	10	108	42	11	11	35	1.77
14284055--14284230	7	27.0	6	72	16	86	19	0	34	45	1.55
14284032--14284103	27	2.7	27	80	0	81	23	2	33	40	1.69
14284012--14284118	13	8.2	12	68	19	54	21	2	34	41	1.68
14284056--14284217	13	12.3	13	69	12	98	19	0	34	45	1.56
14284044--14284230	20	9.4	20	74	12	104	19	1	34	45	1.57
14286272--14286297	13	2.0	13	100	0	52	53	0	7	38	1.30
14286320--14286698	143	2.6	142	81	8	430	39	12	14	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14290057--14290135	41	1.9	42	86	2	115	44	12	6	36	1.68
14290416--14290558	24	6.0	24	75	11	134	38	6	14	40	1.72
14293693--14293740	24	2.0	25	83	4	62	33	6	10	50	1.62
14294748--14294788	18	2.3	18	88	12	59	43	7	9	39	1.65
14297034--14297101	19	3.5	19	78	13	68	13	19	26	41	1.88
14297362--14297408	3	16.0	3	95	4	87	31	0	0	68	0.90
14297701--14297737	19	1.9	19	88	0	56	64	8	2	24	1.34
14299801--14300169	183	2.0	184	89	3	564	33	14	14	36	1.88
14302167--14302193	12	2.2	12	100	0	54	33	0	14	51	1.43
14302163--14302199	16	2.3	16	95	0	65	35	0	13	51	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147