genome.fa.s445.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  88  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16141930--16141971	20	2.2	20	91	8	70	69	0	0	30	0.89
16142745--16142810	18	3.9	17	78	9	64	81	1	10	6	0.92
16154266--16154332	34	2.0	34	84	0	89	23	10	10	55	1.65
16155918--16155952	16	2.1	18	89	10	56	11	17	0	71	1.14
16166097--16169842	536	7.0	535	90	1	5864	51	18	7	22	1.72
16168402--16168442	22	1.9	21	85	5	55	65	12	4	17	1.42
16169045--16169083	19	2.1	19	85	9	53	53	12	2	30	1.52
16170391--16170455	29	2.3	27	77	15	76	50	4	1	43	1.32
16170820--16170873	9	6.2	9	75	14	51	25	0	3	70	1.04
16170812--16170893	25	3.2	24	81	6	83	29	0	6	64	1.17
16170811--16170902	27	3.5	25	79	10	87	29	0	6	64	1.19
16170811--16170903	24	3.5	26	76	14	75	29	0	6	64	1.18
16170925--16170982	19	3.1	19	73	14	57	32	0	3	63	1.11
16172088--16172140	19	2.8	18	83	11	70	71	0	1	26	0.96
16172825--16172862	2	19.0	2	88	0	58	47	2	0	50	1.15
16174181--16174240	30	2.0	30	87	12	88	15	5	10	70	1.32
16176763--16176970	107	2.0	106	94	0	362	35	16	12	36	1.86
16176881--16176919	20	2.0	20	84	0	51	35	17	7	38	1.79
16178157--16178189	10	3.4	10	91	4	50	15	3	0	81	0.80
16182279--16182336	30	2.0	30	83	10	75	15	5	6	72	1.24
16184260--16184640	186	2.0	188	84	6	491	37	11	18	33	1.86
16199778--16199818	6	6.8	6	82	0	55	0	19	2	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16202100--16202146	20	2.4	20	89	3	69	80	14	0	4	0.85
16202103--16202140	15	2.5	15	84	16	51	81	15	0	2	0.80
16207213--16207267	27	2.0	27	96	0	101	38	16	12	32	1.86
16207559--16207649	42	2.2	42	88	4	130	21	9	26	41	1.84
16207855--16208107	42	6.2	42	71	10	150	26	13	19	41	1.88
16207968--16208482	75	6.9	74	78	5	460	23	13	20	41	1.88
16207969--16208404	225	1.9	225	82	3	547	22	13	22	42	1.87
16208244--16208358	33	3.2	33	65	23	79	24	11	24	40	1.88
16207980--16208464	225	2.2	225	80	4	539	23	13	21	41	1.88
16207978--16208482	150	3.4	148	80	3	528	23	13	21	41	1.88
16208665--16208780	48	2.4	49	81	5	137	31	11	18	39	1.85
16209222--16209272	22	2.3	21	83	6	57	64	9	13	11	1.49
16211299--16211336	15	2.5	15	84	12	51	81	13	0	5	0.85
16216862--16216922	30	2.1	28	82	11	70	26	1	4	67	1.20
16224882--16224914	10	3.3	10	100	0	66	51	9	0	39	1.34
16226547--16226577	15	2.0	15	93	6	53	70	0	0	29	0.87
16234175--16234216	15	2.8	16	78	14	52	11	11	2	73	1.18
16236044--16236090	16	3.0	16	75	15	53	42	0	4	53	1.20
16236604--16236640	11	3.5	11	88	7	58	89	0	0	10	0.49
16236612--16236641	10	3.0	10	100	0	60	90	0	0	10	0.47
16241691--16241723	16	2.1	16	100	0	66	30	6	18	45	1.73
16243773--16243825	12	4.2	12	83	9	61	20	5	18	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16243772--16243899	27	4.9	27	80	4	138	22	5	19	52	1.66
16243772--16243900	13	9.9	13	76	6	118	22	6	19	51	1.68
16244113--16244157	23	2.0	23	81	0	54	31	2	2	64	1.18
16244355--16244418	17	3.8	17	73	6	58	57	10	10	20	1.62
16246367--16246392	2	13.0	2	100	0	52	50	0	0	50	1.00
16246631--16246785	72	2.2	72	78	0	166	54	10	16	19	1.70
16246744--16246825	35	2.3	35	85	0	101	57	12	13	17	1.65
16246765--16246967	35	5.8	35	70	13	105	49	10	18	21	1.77
16246919--16247005	36	2.4	37	79	9	99	52	2	16	28	1.55
16246940--16247013	36	2.1	36	87	5	105	50	0	20	29	1.49
16246945--16247021	36	2.1	36	80	4	84	48	2	20	28	1.63
16249833--16249869	18	2.1	18	100	0	74	16	29	16	37	1.90
16255285--16255319	12	2.9	12	86	0	52	25	0	8	65	1.21
16255281--16255320	15	2.7	15	84	0	62	30	0	7	62	1.23
16265486--16265514	13	2.1	14	93	6	51	62	3	0	34	1.12
16268512--16268566	22	2.5	22	76	5	58	25	14	10	49	1.76
16268937--16268967	16	1.9	16	93	0	53	41	9	12	35	1.76
16278957--16279023	23	3.1	21	74	18	59	68	0	4	26	1.08
16278964--16279023	19	3.0	18	78	21	66	70	0	3	26	1.03
16293386--16293426	22	1.9	22	85	5	57	51	2	2	43	1.28
16294328--16294872	268	2.0	267	87	4	779	39	10	10	39	1.75
16295431--16295519	29	3.1	29	80	6	117	35	13	13	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16295534--16295615	40	2.0	40	90	0	128	28	10	19	41	1.85
16295550--16295739	69	2.8	68	86	3	265	30	11	16	42	1.82
16295659--16295715	29	2.0	29	92	0	96	33	12	14	40	1.83
16295701--16295882	92	2.0	92	97	0	346	28	11	14	45	1.80
16311279--16311413	70	1.9	70	86	3	191	31	17	2	49	1.58
16312183--16312254	38	1.9	37	83	13	94	47	0	0	52	1.00
16312900--16313016	60	2.0	60	93	3	202	56	0	3	39	1.22
16314791--16314852	31	2.0	31	87	6	90	37	9	14	38	1.79
16318759--16318797	15	2.6	15	87	0	51	41	5	33	20	1.74
16319236--16319281	21	2.2	21	92	0	74	41	4	10	43	1.59
16319242--16319281	21	1.9	21	100	0	80	40	5	12	42	1.64
16330140--16330170	2	15.5	2	93	0	53	51	3	0	45	1.17
16330292--16330348	22	2.5	22	74	20	55	5	17	3	73	1.16
16331238--16331274	17	2.2	17	86	13	51	43	13	8	35	1.74
16332008--16332048	22	1.9	21	90	5	64	36	4	0	58	1.20
16332008--16332055	22	2.1	22	84	3	60	35	4	2	58	1.29
16345340--16345677	50	6.8	50	73	11	248	32	13	11	42	1.79
16345335--16345677	148	2.3	145	80	9	372	33	12	11	42	1.79
16345279--16345659	49	7.7	50	73	13	254	33	13	11	41	1.79
16356890--16357029	74	1.9	74	83	2	183	39	13	12	34	1.83
16368887--16368965	38	2.1	38	95	0	140	30	10	26	32	1.89
16370512--16370536	10	2.5	10	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16370994--16371108	44	2.6	44	95	0	212	38	10	19	32	1.85
16375508--16375539	16	2.0	16	100	0	64	18	6	0	75	1.01
16378890--16378925	6	6.0	6	93	0	63	16	2	0	80	0.83
16379005--16379059	18	3.2	18	94	5	96	76	0	0	23	0.79
16379012--16379064	13	3.9	14	75	7	56	75	0	0	24	0.80
16379012--16379065	18	2.6	22	77	22	71	75	0	0	24	0.80
16379004--16379079	35	2.2	36	79	15	88	75	1	2	21	1.00
16379848--16379930	3	28.3	3	73	9	73	68	1	4	25	1.16
16379958--16380064	23	4.4	23	74	13	79	46	8	3	41	1.52
16381795--16381827	17	1.9	17	88	11	50	12	12	0	75	1.04
16386452--16386497	11	3.9	12	83	11	51	78	0	2	19	0.86
16386449--16386499	18	2.9	18	82	11	61	80	0	1	17	0.81
16387266--16387350	6	14.0	6	76	10	50	77	2	2	17	0.98
16387269--16387348	14	5.4	14	73	20	65	77	2	2	17	0.99
16387269--16387350	23	3.7	21	76	12	67	76	2	2	18	1.00
16393293--16393412	3	42.3	3	68	17	69	32	5	3	58	1.38
16393275--16393405	8	15.5	8	74	17	97	34	4	3	57	1.37
16393293--16393412	42	3.1	36	74	22	93	32	5	3	58	1.38
16394250--16394307	19	3.0	18	82	12	62	22	10	1	65	1.32
16394240--16394280	18	2.3	19	87	8	59	17	17	2	63	1.42
16396382--16396710	132	2.5	131	83	4	396	34	19	15	31	1.92
16396684--16396802	34	3.5	33	81	12	109	34	16	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16396676--16396931	35	7.6	35	71	14	155	37	15	16	31	1.90
16396679--16397125	132	3.4	133	78	7	349	35	16	16	31	1.91
16396977--16397230	35	7.6	34	72	13	129	36	17	14	32	1.89
16396767--16397151	132	2.9	135	78	7	376	36	16	15	30	1.91
16396777--16397194	132	3.2	132	73	11	361	36	16	15	31	1.90
16397107--16397234	34	3.8	33	76	9	109	36	15	15	32	1.89
16397180--16397293	60	1.9	61	80	5	133	32	17	17	32	1.93
16397284--16397477	100	1.9	99	82	8	241	32	18	18	30	1.95
16397453--16397591	32	4.2	33	75	8	115	39	17	12	30	1.87
16397466--16397617	33	4.6	34	76	10	118	40	15	13	30	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147