genome.fa.s445.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  53  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10181946--10181992	22	2.1	22	92	7	78	17	2	2	78	0.94
10181946--10181992	7	6.4	7	79	16	51	17	2	2	78	0.94
10182339--10182392	25	2.2	25	86	6	74	42	1	14	40	1.57
10182904--10183050	10	14.7	10	68	20	76	19	4	2	73	1.13
10182904--10183028	47	2.7	46	79	12	121	19	4	3	73	1.13
10182962--10183051	37	2.6	33	77	14	92	14	6	1	77	1.02
10183007--10183052	23	1.9	25	86	8	69	15	6	0	78	0.95
10183060--10183543	60	8.2	59	85	4	636	46	8	12	33	1.72
10183060--10183669	118	5.0	118	84	9	705	46	8	12	33	1.71
10183092--10183669	177	3.1	177	90	5	816	45	8	12	33	1.72
10183418--10183669	135	1.9	136	85	8	361	47	7	11	32	1.68
10183554--10183669	62	1.9	60	86	10	166	45	7	12	33	1.71
10183707--10183732	13	2.0	13	100	0	52	15	0	7	76	0.99
10186687--10186721	15	2.3	15	95	0	61	5	34	28	31	1.81
10188964--10189118	78	2.0	78	89	5	242	30	14	16	38	1.89
10189158--10189355	109	1.8	109	86	2	290	31	28	17	22	1.96
10194802--10194898	51	1.9	51	100	0	194	37	20	16	25	1.93
10197290--10197370	12	7.5	10	75	17	65	69	9	0	20	1.17
10197298--10197367	12	6.3	11	79	12	72	70	11	0	18	1.17
10198189--10198217	11	2.6	11	100	0	58	6	6	6	79	1.06
10198399--10198843	40	11.3	39	72	10	190	40	18	12	28	1.87
10198420--10198803	40	9.7	39	77	7	321	40	19	12	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10198421--10198843	120	3.6	119	82	4	453	40	18	12	27	1.87
10198941--10199058	40	2.9	39	83	12	141	38	16	14	30	1.88
10211652--10211740	3	29.7	3	95	0	160	65	1	1	32	1.08
10213264--10213340	29	2.6	28	77	6	82	51	0	3	44	1.19
10214052--10214082	12	2.5	13	94	5	55	35	0	0	64	0.94
10215095--10215125	16	1.9	16	93	0	53	54	0	3	41	1.16
10215478--10215516	19	2.0	20	85	5	53	38	0	0	61	0.96
10221246--10221283	2	19.0	2	100	0	76	50	0	0	50	1.00
10224560--10224589	2	15.0	2	100	0	60	50	0	0	50	1.00
10226620--10226716	51	1.9	51	100	0	194	37	20	16	25	1.93
10229146--10229192	23	2.0	24	87	4	69	68	12	0	19	1.21
10229146--10229192	12	4.1	11	86	8	58	68	12	0	19	1.21
10230263--10230686	40	10.7	39	76	4	321	41	19	11	26	1.86
10230248--10230679	79	5.5	78	79	5	379	41	19	11	27	1.86
10230783--10230900	40	2.9	39	80	12	132	38	16	14	29	1.89
10244359--10244399	3	13.7	3	100	0	82	65	0	0	34	0.93
10247720--10247750	16	1.9	16	93	0	53	54	0	3	41	1.16
10248103--10248141	19	2.0	20	85	5	53	38	0	0	61	0.96
10250114--10250156	21	2.1	20	83	12	52	41	0	2	55	1.12
10251868--10251912	21	2.1	21	100	0	90	46	48	4	0	1.22
10251863--10251898	15	2.4	14	86	13	54	50	47	2	0	1.15
10251931--10251986	18	3.1	18	100	0	112	21	23	16	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10261022--10261080	31	2.0	28	87	9	82	47	0	0	52	1.00
10262468--10262512	21	2.1	21	87	0	63	33	4	6	55	1.46
10263699--10263737	2	19.5	2	100	0	78	51	0	48	0	1.00
10264962--10264995	8	4.2	8	88	11	52	85	2	0	11	0.71
10265384--10265408	3	8.3	3	100	0	50	36	0	0	64	0.94
10277943--10278017	29	2.6	29	87	8	107	40	5	2	52	1.38
10277995--10278075	30	2.7	29	83	7	99	37	8	2	51	1.46
10288669--10288716	19	2.5	19	83	6	62	62	0	0	37	0.95
10288702--10288751	17	2.9	17	82	5	66	48	2	0	50	1.12
10289789--10289818	15	2.0	15	93	0	51	50	0	0	50	1.00
10289810--10289886	25	3.0	26	75	12	70	50	1	0	48	1.09
10289836--10289875	21	2.0	21	90	5	64	52	0	0	47	1.00
10290569--10290672	53	2.0	53	81	14	126	39	1	3	54	1.30
10291588--10291629	21	2.0	22	85	4	59	52	0	7	40	1.29
10292179--10292218	11	3.3	12	86	10	55	35	5	0	60	1.19
10293693--10293808	54	2.1	54	90	0	178	8	25	36	30	1.86
10297384--10297469	44	2.0	44	100	0	172	38	2	13	45	1.57
10298708--10298765	19	3.0	20	87	7	77	50	1	0	48	1.11
10299909--10299937	2	14.5	2	100	0	58	51	0	0	48	1.00
10301375--10301467	33	2.8	32	70	12	89	53	1	2	43	1.19
10312760--10312799	2	20.0	2	94	0	71	50	0	2	47	1.14
10313938--10313993	28	2.0	29	85	3	78	51	8	1	37	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10314342--10314373	13	2.4	14	85	15	50	68	0	0	31	0.90
10320461--10320508	11	4.5	11	78	17	57	58	0	0	41	0.98
10322899--10322931	14	2.3	15	89	5	50	78	0	0	21	0.75
10322929--10322978	18	2.9	17	80	11	57	56	0	2	42	1.11
10322935--10322972	18	2.1	18	90	5	58	57	0	2	39	1.12
10323004--10323060	13	4.1	15	70	19	52	52	1	3	42	1.28
10328232--10328298	30	2.3	30	81	2	73	37	5	2	53	1.41
10330734--10330764	2	15.5	2	100	0	62	48	0	0	51	1.00
10334847--10334918	35	2.0	36	97	2	137	25	22	16	36	1.94
10342797--10342839	17	2.8	15	89	10	61	37	2	0	60	1.10
10347014--10347078	23	2.9	23	82	13	73	56	0	0	43	0.99
10347369--10347685	155	2.0	160	85	4	439	39	5	3	52	1.39
10347411--10347719	155	2.0	153	81	8	358	40	6	2	50	1.43
10351690--10351748	27	2.1	28	81	9	68	35	5	0	59	1.20
10352057--10352090	16	2.1	16	88	5	50	47	0	0	52	1.00
10353232--10353266	12	2.8	12	91	4	52	65	11	20	2	1.37
10354031--10354080	20	2.6	19	78	6	57	30	0	2	68	1.01
10353976--10354109	53	2.5	52	78	14	130	34	0	5	60	1.19
10354460--10354507	25	1.9	25	82	0	60	62	0	0	37	0.95
10356326--10356350	2	12.5	2	100	0	50	48	0	0	52	1.00
10358796--10358860	31	2.1	31	94	0	112	49	9	4	36	1.56
10359953--10359992	11	3.3	12	86	10	55	35	5	0	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10361473--10361590	54	2.1	56	87	3	168	8	26	35	29	1.86
10362667--10362733	33	2.0	33	97	0	125	55	17	16	10	1.69
10365218--10365303	44	2.0	44	100	0	172	38	2	13	45	1.57
10365714--10365742	2	14.5	2	100	0	58	51	0	0	48	1.00
10366551--10366587	18	2.1	18	90	10	58	56	0	0	43	0.99
10367013--10367043	16	1.9	16	93	0	53	48	12	6	32	1.67
10367331--10367367	14	2.6	14	91	0	56	18	0	2	78	0.87
10375772--10375805	17	1.9	18	88	5	52	50	2	0	47	1.16
10375835--10375893	28	2.3	25	76	20	68	57	0	0	42	0.98
10380525--10380558	2	17.0	2	87	0	50	52	0	2	44	1.16
10381086--10381115	9	3.2	9	95	4	51	63	0	0	36	0.95
10381088--10381117	10	3.1	10	95	4	53	63	0	0	36	0.95
10381085--10381131	19	2.5	20	79	10	62	61	0	0	38	0.96
10381416--10381440	12	2.1	12	100	0	50	32	0	36	32	1.58
10381862--10381915	26	2.0	27	85	3	74	51	9	0	38	1.34
10390920--10390952	14	2.3	15	89	5	50	78	0	0	21	0.75
10390950--10390999	18	2.9	17	80	11	57	56	0	2	42	1.11
10390956--10390993	18	2.1	18	90	5	58	57	0	2	39	1.12
10391025--10391081	13	4.1	15	70	19	52	52	1	3	42	1.28
10396347--10396414	30	2.3	30	81	0	73	33	7	4	54	1.48
10398898--10398924	2	13.5	2	100	0	54	48	0	0	51	1.00
10401367--10401423	13	4.1	15	70	19	52	52	1	3	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10406594--10406660	30	2.3	30	81	2	73	37	5	2	53	1.41
10409110--10409142	2	16.5	2	100	0	66	48	0	0	51	1.00
10413133--10413501	205	1.8	202	92	1	621	31	18	17	32	1.94
10421134--10421168	14	2.4	15	95	4	63	37	0	0	62	0.95
10421237--10421273	19	1.9	19	94	0	65	43	2	8	45	1.47
10425314--10425378	23	2.9	23	82	13	73	56	0	0	43	0.99
10425817--10425858	15	2.9	14	80	13	50	38	0	2	59	1.10
10425672--10425987	159	2.0	156	85	5	422	39	5	3	52	1.39
10430348--10430381	16	2.1	16	88	5	50	47	0	0	52	1.00
10432332--10432360	13	2.1	14	93	6	51	31	0	0	68	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147