genome.fa.s445.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  89  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16397537--16397646	32	3.3	34	80	7	102	37	15	15	31	1.89
16398017--16398062	17	2.5	18	80	19	51	8	17	0	73	1.07
16398016--16398059	21	2.2	20	87	4	61	9	18	0	72	1.10
16398654--16398685	9	3.8	9	92	8	50	50	0	0	50	1.00
16404960--16405197	79	3.0	80	83	3	327	44	23	9	23	1.82
16405625--16405680	24	2.3	24	93	0	94	23	3	23	50	1.65
16406148--16406414	146	1.8	146	87	1	401	43	8	12	35	1.73
16413273--16413343	33	2.2	33	84	5	90	38	21	9	30	1.86
16414086--16414151	19	3.4	19	81	4	69	43	25	15	15	1.85
16416175--16416356	7	28.5	6	67	20	63	19	1	34	43	1.61
16416203--16416342	38	3.8	38	70	21	120	20	1	34	43	1.61
16416230--16416280	19	2.7	18	85	8	66	19	1	33	45	1.62
16416206--16416342	70	2.0	69	84	8	179	20	1	33	44	1.61
16420754--16420792	19	2.0	20	85	5	53	23	2	10	64	1.37
16422343--16422414	33	2.2	33	82	5	83	27	4	0	68	1.08
16422328--16422413	34	2.4	34	76	16	86	29	3	1	66	1.16
16438564--16438608	22	2.1	22	83	4	56	22	8	8	60	1.55
16441380--16441430	21	2.4	21	93	6	86	56	3	17	21	1.57
16442826--16442863	15	2.4	16	86	13	60	73	5	21	0	1.02
16445080--16445119	1	40.0	1	84	0	53	0	5	2	92	0.45
16445074--16445119	21	2.2	21	88	0	65	0	6	4	89	0.60
16447351--16447601	128	2.0	128	90	0	394	35	9	17	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16448933--16449163	119	1.9	119	96	0	426	36	12	17	32	1.88
16456643--16456947	147	2.1	147	93	0	511	32	16	15	36	1.90
16459725--16459793	35	2.0	35	91	0	111	56	14	18	10	1.66
16461827--16461860	17	1.9	18	88	5	52	26	8	5	58	1.51
16463524--16463628	52	2.0	52	90	0	165	28	21	7	41	1.81
16465558--16465659	52	2.0	52	92	0	168	40	6	21	31	1.80
16466602--16466667	18	3.7	18	71	15	64	31	7	24	36	1.83
16470196--16470224	15	1.9	15	100	0	58	65	0	0	34	0.93
16470259--16470322	29	2.2	28	78	10	67	64	4	0	31	1.14
16470471--16470513	22	2.0	22	86	4	61	58	0	0	41	0.98
16472767--16472815	17	2.9	17	82	8	55	51	6	14	28	1.66
16472773--16472823	17	3.0	17	77	11	50	50	7	15	25	1.71
16472886--16472923	14	2.7	14	80	15	51	50	10	13	26	1.73
16473602--16473644	3	14.3	3	81	18	54	32	0	0	67	0.91
16475911--16476139	59	3.8	58	79	8	208	27	16	11	43	1.83
16476344--16476474	61	2.2	61	79	4	140	32	13	9	45	1.75
16476757--16476922	61	2.8	61	79	13	175	30	16	14	38	1.88
16476902--16477221	158	2.0	158	85	1	435	33	14	15	35	1.88
16479726--16479751	13	2.0	13	100	0	52	76	7	7	7	1.15
16484011--16484279	126	2.1	126	83	4	328	40	12	13	33	1.82
16484011--16484195	64	2.9	63	72	9	171	41	10	13	34	1.79
16484100--16484279	62	2.9	63	74	2	191	40	12	13	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16484367--16484434	35	1.9	35	87	0	100	39	10	17	32	1.84
16487574--16487650	25	3.1	23	72	22	66	53	25	2	18	1.57
16487592--16487655	13	5.0	13	75	9	69	51	28	1	18	1.55
16487589--16487685	12	7.6	12	73	21	72	50	27	2	19	1.59
16487995--16489300	366	3.6	364	85	4	1628	43	11	10	34	1.75
16495485--16495510	13	2.0	13	100	0	52	38	7	15	38	1.76
16495587--16495616	2	15.0	2	100	0	60	50	0	0	50	1.00
16495781--16495854	15	4.9	14	73	17	51	35	2	4	58	1.31
16495786--16495856	29	2.4	29	83	4	79	36	2	4	56	1.34
16506459--16506492	17	2.0	17	88	0	50	17	0	2	79	0.86
16508801--16508869	31	2.3	31	82	7	88	28	10	8	52	1.65
16510643--16510672	6	5.0	6	95	0	51	66	3	16	13	1.37
16515481--16515551	18	3.9	18	81	0	79	32	33	5	28	1.80
16515483--16515584	18	5.8	18	73	6	75	33	32	3	30	1.76
16517978--16518030	10	5.3	10	80	8	63	58	1	0	39	1.09
16517978--16518030	20	2.7	20	84	0	70	58	1	0	39	1.09
16518023--16518083	26	2.5	24	86	5	77	63	1	4	29	1.24
16518025--16518083	24	2.4	23	81	10	64	64	1	5	28	1.24
16518047--16518100	24	2.2	24	83	3	63	55	7	5	31	1.51
16518290--16518334	18	2.4	20	82	14	60	26	0	8	64	1.23
16518278--16518439	10	18.0	9	68	18	56	27	2	7	62	1.35
16518564--16518651	46	1.9	45	86	6	124	29	0	5	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16518574--16518635	28	2.3	26	83	5	79	30	0	8	61	1.25
16518595--16518651	19	3.1	18	73	14	53	26	0	7	66	1.17
16518683--16518756	19	3.8	19	77	19	73	37	1	5	55	1.31
16518685--16518767	19	4.3	19	76	13	71	33	2	7	56	1.40
16523779--16523875	49	2.0	49	80	8	108	31	3	5	59	1.35
16523992--16524037	22	2.1	22	88	8	67	26	0	6	67	1.15
16524233--16524340	19	5.8	18	73	19	80	57	2	5	34	1.36
16524532--16524570	18	2.1	19	81	18	55	64	0	0	35	0.94
16524537--16524570	17	1.9	18	94	5	61	67	0	0	32	0.91
16524540--16524587	24	2.0	24	88	8	71	64	0	0	35	0.94
16524533--16524625	44	2.1	42	81	13	100	59	1	1	38	1.12
16524537--16524616	9	9.4	8	70	17	54	63	1	1	33	1.10
16524604--16524643	20	2.0	21	90	5	64	45	0	2	52	1.14
16525756--16525797	22	1.9	22	85	9	59	2	23	4	69	1.20
16529953--16530096	72	2.0	72	88	0	216	40	18	7	34	1.79
16530552--16530756	73	2.8	73	89	0	295	37	10	7	44	1.67
16532451--16532533	20	4.2	20	84	0	85	27	6	15	50	1.67
16532561--16532630	20	3.5	20	78	18	72	30	1	7	61	1.31
16532573--16532681	53	2.1	53	91	0	173	30	2	7	59	1.39
16532631--16532709	21	3.8	21	73	17	74	31	6	8	53	1.57
16532622--16532715	41	2.3	41	87	3	127	31	5	8	54	1.53
16532799--16532846	19	2.5	19	80	6	62	31	4	12	52	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16532809--16532875	34	1.9	34	85	8	91	32	4	13	49	1.62
16532966--16533007	20	2.1	20	95	0	75	23	7	14	54	1.64
16532961--16533004	20	2.3	18	82	14	61	25	6	13	54	1.63
16532957--16533084	18	6.9	18	70	18	77	32	5	10	50	1.60
16540570--16540615	16	2.8	17	77	12	51	78	0	17	4	0.91
16542063--16542359	43	7.1	42	78	11	317	27	13	21	37	1.91
16542063--16542359	85	3.6	83	81	11	322	27	13	21	37	1.91
16542075--16542360	42	6.9	42	77	14	218	27	13	22	36	1.92
16543303--16543386	20	4.2	20	89	3	82	29	8	10	51	1.66
16543303--16543386	40	2.1	40	86	4	116	29	8	10	51	1.66
16543318--16543387	20	3.5	20	94	0	104	31	7	8	52	1.59
16543343--16543512	53	3.2	53	78	11	156	27	6	11	54	1.61
16543446--16543487	21	2.0	22	90	4	68	26	4	11	57	1.54
16543446--16543497	20	2.5	21	84	9	63	26	5	13	53	1.62
16543362--16543614	138	1.8	137	81	10	311	27	4	11	56	1.55
16543585--16543641	20	2.5	25	83	13	70	28	3	14	54	1.56
16543585--16543654	24	3.1	24	81	16	71	28	4	11	55	1.54
16543758--16543796	20	2.0	20	89	0	60	25	5	15	53	1.62
16543739--16543838	18	5.4	19	73	14	68	32	5	11	52	1.58
16543863--16543908	24	1.9	23	86	8	65	28	8	17	45	1.78
16546323--16546459	24	5.7	24	83	6	143	34	14	4	46	1.65
16546323--16546460	48	2.9	49	85	2	172	34	14	4	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16546320--16546459	72	1.9	72	86	2	201	33	15	4	47	1.65
16549680--16549704	2	12.5	2	100	0	50	52	0	0	48	1.00
16552642--16552685	17	2.7	16	79	6	52	77	0	20	2	0.88
16552642--16552692	18	3.0	18	76	21	56	74	0	21	3	0.98
16554401--16554433	16	2.1	16	94	0	57	24	21	0	54	1.45
16556134--16556158	13	1.9	13	100	0	50	72	0	12	16	1.13
16557459--16557527	9	7.3	9	76	9	66	78	4	17	0	0.91
16557472--16557509	12	3.3	12	82	14	53	81	7	10	0	0.87
16557430--16557492	26	2.4	28	79	10	71	76	1	20	1	0.96
16557396--16557528	20	6.7	19	67	16	74	74	2	21	2	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147