genome.fa.s445.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  23  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4834426--4834473	19	2.6	18	72	21	53	37	14	0	47	1.44
4839196--4839252	21	2.7	21	97	0	105	33	24	10	31	1.89
4839707--4839760	23	2.3	23	90	3	81	24	24	12	38	1.90
4840878--4841114	128	1.8	128	81	6	291	51	15	2	30	1.54
4841236--4841289	24	2.3	23	81	9	63	62	0	1	35	1.06
4841756--4841791	15	2.3	15	90	4	54	44	11	8	36	1.70
4843933--4843980	22	2.2	22	85	3	62	31	4	4	60	1.35
4849912--4850042	67	1.9	68	83	4	167	26	21	16	35	1.94
4850714--4850775	31	2.0	31	96	0	115	29	8	16	46	1.75
4851746--4851952	109	1.9	110	91	1	344	21	23	22	32	1.98
4852815--4852849	17	2.1	17	88	0	52	57	2	14	25	1.51
4854306--4854330	13	1.9	13	100	0	50	36	0	0	64	0.94
4854893--4854917	12	2.1	12	100	0	50	0	40	0	60	0.97
4855061--4855094	6	5.7	6	92	0	50	0	5	17	76	0.98
4862870--4862940	35	2.0	35	94	0	124	21	19	14	45	1.85
4865016--4865061	24	1.9	24	82	8	58	54	2	8	34	1.43
4865608--4865696	30	3.0	31	82	8	96	55	4	6	33	1.47
4871473--4871538	34	1.9	34	84	0	87	43	6	13	36	1.69
4872689--4872715	13	2.1	13	100	0	54	44	7	0	48	1.31
4872671--4872768	48	2.1	44	80	10	99	50	3	2	44	1.29
4873050--4873094	2	22.5	2	95	0	81	48	0	0	51	1.00
4879319--4879414	24	4.0	24	75	10	81	32	36	13	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4892143--4892185	22	2.0	20	82	8	50	62	9	16	11	1.53
4898047--4898128	41	2.0	41	83	9	105	36	13	19	30	1.90
4898813--4898837	12	2.1	12	100	0	50	24	0	0	76	0.80
4900292--4900461	85	2.0	85	96	0	313	35	10	10	43	1.73
4902354--4902383	2	15.0	2	100	0	60	50	0	0	50	1.00
4902941--4902979	16	2.4	16	82	0	51	15	2	25	56	1.52
4904900--4904956	30	1.9	30	86	10	82	36	0	3	59	1.14
4904896--4904958	29	2.2	28	79	17	69	34	0	3	61	1.12
4904977--4905035	31	1.9	30	86	10	84	50	0	8	40	1.33
4906486--4906571	43	2.0	43	84	6	113	48	5	6	38	1.54
4908206--4908256	18	3.0	17	77	8	59	78	1	5	13	1.02
4908213--4908268	12	4.6	12	86	6	60	76	3	5	14	1.09
4908213--4908268	18	3.1	18	82	7	60	76	3	5	14	1.09
4911946--4912021	29	2.7	26	79	18	73	53	1	1	43	1.17
4914396--4914476	34	2.4	34	78	10	103	27	13	13	45	1.81
4919486--4919544	29	2.0	29	96	0	109	33	0	1	64	1.04
4919500--4919561	5	12.6	5	84	3	81	25	0	1	72	0.94
4925809--4925857	24	2.0	24	84	4	62	42	2	2	53	1.24
4926763--4926806	18	2.4	19	81	14	56	65	4	0	29	1.12
4927085--4927136	19	2.5	20	79	14	54	61	5	1	30	1.30
4926310--4927250	327	2.9	326	86	4	1272	41	7	8	41	1.64
4927284--4927361	29	2.6	29	80	8	77	47	6	1	44	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4927254--4927344	29	3.1	29	77	13	80	51	6	1	40	1.35
4927413--4927442	9	3.4	9	95	4	53	60	0	0	40	0.97
4927437--4927465	14	2.0	15	93	6	51	37	0	0	62	0.96
4927496--4927541	24	2.0	23	82	4	56	54	0	2	43	1.12
4928667--4928710	22	2.0	22	86	8	63	31	2	0	65	1.05
4929845--4929902	29	2.0	29	86	10	82	43	0	3	53	1.17
4929881--4929923	21	2.0	22	86	4	61	30	0	4	65	1.13
4930843--4930956	31	3.7	30	75	14	90	47	0	0	50	1.13
4931506--4931538	16	2.1	16	88	11	50	39	6	0	54	1.25
4931522--4931571	20	2.4	21	80	16	59	38	4	0	58	1.17
4935619--4935655	15	2.7	13	84	15	56	21	0	5	72	1.04
4935624--4935655	15	2.1	15	100	0	64	18	0	6	75	1.01
4942996--4943029	13	2.7	13	90	4	52	82	0	17	0	0.67
4957259--4957296	20	1.9	20	88	0	58	44	28	5	21	1.73
4959623--4959663	20	2.0	21	85	4	57	48	0	0	51	1.00
4965590--4965649	31	1.9	31	89	0	93	36	10	6	46	1.64
4966193--4966271	30	2.7	30	78	2	88	53	5	6	35	1.48
4966547--4966582	18	2.0	18	89	10	56	33	0	0	66	0.92
4966552--4966595	18	2.5	18	85	3	54	31	2	2	63	1.19
4976692--4976730	14	2.9	14	92	3	62	35	12	5	46	1.65
4978037--4978061	7	3.6	7	100	0	50	48	40	0	12	1.40
4979130--4979202	38	2.0	36	82	15	87	56	2	0	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4980049--4980073	2	12.5	2	100	0	50	48	0	0	52	1.00
4983196--4983260	30	2.2	29	83	5	85	43	7	1	47	1.41
4983892--4983925	17	2.1	17	88	5	52	44	0	0	55	0.99
4988450--4988499	24	2.1	23	82	10	57	74	0	8	18	1.06
5000848--5000932	36	2.5	33	83	12	100	42	0	2	55	1.12
5000898--5000943	20	2.2	21	85	14	69	54	0	0	45	0.99
5000894--5000948	24	2.4	22	80	14	58	49	0	0	50	1.00
5007009--5007066	28	2.1	28	96	0	107	51	13	15	18	1.76
5018877--5018902	2	13.0	2	100	0	52	50	0	0	50	1.00
5022015--5022040	12	2.2	12	100	0	52	19	26	0	53	1.45
5030159--5030204	18	2.6	18	100	0	92	52	23	10	13	1.71
5034499--5034996	249	2.0	249	97	0	951	26	15	18	39	1.91
5047310--5047391	36	2.4	36	88	10	118	42	1	2	53	1.21
5047295--5047391	36	2.8	33	82	13	115	43	1	2	53	1.19
5047353--5047401	24	2.0	23	84	7	62	55	0	0	44	0.99
5047357--5047406	22	2.4	22	86	6	77	54	0	0	46	1.00
5059049--5059106	28	2.1	28	96	0	107	51	13	15	18	1.76
5065706--5065743	3	12.7	3	100	0	76	34	0	0	65	0.93
5066265--5066327	27	2.4	26	75	2	63	34	4	1	58	1.29
5072255--5072295	20	2.0	20	85	0	55	43	0	0	56	0.99
5072554--5072607	11	4.9	11	75	20	51	53	0	0	46	1.00
5075770--5075827	28	2.1	28	96	0	107	51	13	15	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5081555--5081580	3	8.7	3	100	0	52	34	0	0	65	0.93
5088952--5088997	18	2.6	18	100	0	92	52	23	10	13	1.71
5098991--5099023	14	2.3	15	89	5	50	21	0	18	60	1.36
5105347--5105372	9	2.9	9	100	0	52	30	0	0	69	0.89
5106559--5106591	14	2.3	15	89	5	50	21	0	18	60	1.36
5107792--5107821	15	2.0	15	100	0	60	26	6	20	46	1.75
5110759--5110863	28	3.2	33	76	14	85	14	15	7	62	1.52
5110785--5110851	26	2.5	26	80	9	73	14	14	7	62	1.52
5118895--5118951	18	2.8	20	75	22	57	49	1	0	49	1.11
5119364--5119411	14	3.1	14	76	21	51	66	6	0	27	1.15
5119357--5119427	18	4.2	18	74	20	53	66	5	2	25	1.27
5119374--5119427	18	3.1	17	86	5	72	70	5	1	22	1.18
5119529--5120526	369	2.7	369	82	4	1182	21	30	19	27	1.98
5123426--5123495	18	3.9	19	73	16	60	47	1	4	47	1.31
5123457--5123516	29	2.1	29	90	6	95	38	0	5	56	1.21
5123426--5123490	11	5.2	13	72	18	50	46	1	4	47	1.32
5123750--5123786	14	2.6	14	88	12	58	45	0	5	48	1.25
5123967--5124074	41	2.6	41	97	0	198	31	16	15	36	1.91
5124345--5124389	7	6.3	7	82	12	56	57	0	0	42	0.98
5124352--5124398	22	2.1	22	88	7	69	55	0	0	44	0.99
5124358--5124414	23	2.5	22	82	5	60	54	1	0	43	1.10
5129062--5129111	18	2.8	18	79	14	50	52	2	0	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5129073--5129105	16	1.9	18	88	11	52	48	3	0	48	1.17
5129487--5129532	18	2.6	18	100	0	92	52	23	10	13	1.71
5135993--5136046	2	27.0	2	100	0	108	50	0	0	50	1.00
5139556--5139588	14	2.3	15	89	5	50	21	0	18	60	1.36
5139892--5139916	2	12.5	2	100	0	50	52	0	0	48	1.00
5140780--5140809	15	2.0	15	100	0	60	26	6	20	46	1.75
5142573--5142666	34	2.9	31	73	17	82	14	13	6	64	1.46
5142572--5142674	32	3.1	32	75	10	91	14	13	6	65	1.46
5142611--5142686	32	2.3	34	80	13	95	14	13	7	64	1.49
5150714--5150748	17	1.9	19	88	11	56	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147