genome.fa.s445.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  59  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11334930--11334974	21	2.1	22	91	4	74	0	46	0	53	1.00
11335507--11335663	4	39.8	4	66	16	60	64	3	3	28	1.26
11335544--11335582	18	2.2	18	90	0	60	64	2	5	28	1.28
11335559--11335597	14	2.6	14	88	8	51	64	5	5	25	1.35
11335572--11335626	26	2.0	26	83	13	67	63	3	3	29	1.28
11335549--11335662	50	2.3	48	79	16	128	64	4	4	27	1.32
11335637--11335686	16	3.1	16	85	5	57	68	2	6	24	1.23
11336904--11336946	23	1.9	21	81	13	50	55	18	4	20	1.60
11338748--11338819	27	2.5	28	80	11	83	27	4	1	66	1.18
11338748--11338878	29	4.5	29	71	14	85	25	4	2	67	1.21
11338846--11338903	22	2.6	21	84	10	71	24	6	3	65	1.33
11339477--11339514	18	2.1	18	90	0	58	55	0	44	0	0.99
11339721--11339764	5	8.4	5	90	9	70	20	38	38	2	1.65
11339836--11339900	21	3.0	21	73	13	60	13	9	1	75	1.11
11339922--11340084	61	2.8	59	93	3	267	48	6	14	31	1.68
11340063--11340106	22	2.0	22	100	0	88	36	13	13	36	1.85
11340006--11340165	81	2.0	80	91	4	261	41	10	14	33	1.79
11340085--11340516	59	7.3	58	85	8	545	44	8	13	33	1.73
11340085--11340516	177	2.5	175	89	5	640	44	8	13	33	1.73
11340085--11340516	118	3.7	117	89	5	629	44	8	13	33	1.73
11351780--11351839	26	2.3	25	83	8	75	53	1	0	45	1.10
11351883--11351915	10	3.1	11	86	8	50	21	0	3	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11354659--11354846	93	2.0	93	97	0	358	40	21	11	26	1.87
11362568--11362611	14	3.1	14	78	12	54	54	2	0	43	1.12
11364557--11364609	17	3.1	17	81	10	63	28	5	5	60	1.42
11364845--11364882	19	2.0	20	85	10	53	57	2	0	39	1.12
11370910--11370952	18	2.3	19	80	15	54	65	0	2	32	1.06
11372687--11372738	19	2.6	20	78	9	61	3	21	0	75	0.97
11379632--11379712	22	3.5	22	75	20	76	70	2	2	24	1.12
11381227--11381251	9	2.8	9	100	0	50	56	20	24	0	1.43
11381958--11382025	23	3.0	22	78	6	73	45	0	1	52	1.09
11382028--11382079	26	2.1	24	86	10	70	69	1	1	26	1.10
11384666--11384743	40	1.9	41	81	5	95	23	10	8	57	1.60
11387063--11387119	25	2.3	25	75	3	71	45	3	3	47	1.37
11387205--11387282	6	12.3	6	71	15	50	69	1	0	29	0.97
11387217--11387277	16	3.9	15	76	14	61	65	1	0	32	1.02
11387204--11387282	33	2.5	32	83	8	99	68	1	0	30	0.98
11390173--11390226	17	3.2	17	79	10	65	18	0	29	51	1.46
11390622--11390658	14	2.4	16	86	8	51	72	0	0	27	0.84
11391639--11391683	23	2.0	23	86	8	65	20	13	53	13	1.72
11391746--11391791	18	2.5	19	83	16	62	32	0	0	67	0.91
11391764--11391824	31	1.9	32	84	15	83	36	0	0	63	0.94
11392308--11392347	17	2.3	18	86	4	55	20	0	0	80	0.72
11396775--11396801	9	3.0	9	100	0	54	88	0	11	0	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11397889--11397964	36	2.1	36	87	0	107	9	25	21	44	1.81
11397896--11397986	36	2.5	36	80	0	92	13	27	18	40	1.88
11398105--11398312	104	2.0	104	83	5	260	19	21	12	47	1.81
11398756--11398797	21	2.0	21	82	13	52	64	7	2	26	1.32
11399206--11399234	9	3.2	9	100	0	58	89	0	0	10	0.48
11399975--11400013	20	2.0	20	89	0	60	64	7	2	25	1.33
11400096--11400141	3	15.7	3	95	4	85	69	0	0	30	0.89
11401750--11401783	13	2.5	13	90	4	50	17	11	0	70	1.16
11402339--11402403	32	2.0	32	82	11	80	30	1	4	63	1.24
11402536--11402634	31	3.2	31	79	0	99	43	4	5	47	1.44
11402950--11402991	22	2.0	21	90	4	66	52	11	0	35	1.38
11402952--11403014	11	5.9	11	69	12	51	50	12	0	36	1.41
11403444--11403481	17	2.2	18	85	4	51	15	2	5	76	1.08
11404558--11404632	7	10.7	7	94	0	114	20	0	57	22	1.41
11410765--11410802	14	2.8	14	92	4	60	65	0	34	0	0.93
11410876--11410929	18	2.8	19	77	5	56	68	1	29	0	1.00
11410883--11410912	15	2.0	15	93	0	51	70	0	30	0	0.88
11419346--11419378	16	2.1	16	100	0	66	42	0	0	57	0.98
11419585--11419624	2	20.0	2	94	0	71	47	0	2	50	1.14
11422332--11422390	19	3.4	18	80	15	63	77	0	22	0	0.76
11422332--11422412	21	4.0	21	76	6	78	79	0	19	1	0.81
11422360--11422419	5	12.2	5	76	15	54	78	0	20	1	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11430733--11430795	21	3.0	21	90	2	92	58	0	3	38	1.14
11431296--11431359	24	2.6	24	87	7	85	56	0	0	43	0.99
11431354--11431380	11	2.5	11	100	0	54	59	0	0	40	0.98
11431325--11431401	25	3.0	25	81	12	70	54	0	0	45	0.99
11431363--11431404	16	2.6	17	82	14	54	54	0	0	45	0.99
11431405--11431447	20	2.1	21	86	4	61	51	6	6	34	1.56
11432531--11432595	5	13.2	5	77	19	57	13	3	1	81	0.88
11432521--11432592	14	5.1	14	79	15	69	13	2	2	80	0.93
11432532--11432595	9	7.1	9	76	15	53	14	3	1	81	0.89
11432530--11432595	14	4.5	14	79	9	78	13	3	1	81	0.87
11435245--11435401	83	1.9	83	94	0	278	30	12	15	41	1.84
11435356--11435447	46	2.0	46	100	0	184	34	6	21	36	1.80
11435961--11436212	126	2.0	126	98	0	486	35	17	17	29	1.93
11436959--11437009	24	2.1	24	100	0	102	27	7	29	35	1.85
11437530--11437564	17	2.1	17	100	0	70	34	25	11	28	1.91
11442902--11442951	20	2.5	20	75	12	57	28	2	2	68	1.12
11443847--11443876	15	2.1	14	93	6	51	46	0	0	53	1.00
11443847--11443876	7	4.1	7	91	8	51	46	0	0	53	1.00
11443798--11443873	42	1.9	40	82	15	95	48	0	0	51	1.00
11444596--11444726	63	2.1	63	84	5	167	41	6	4	46	1.51
11444550--11444911	193	1.9	196	86	4	527	41	6	6	45	1.55
11444923--11445054	62	2.1	61	81	9	151	34	9	6	49	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11445327--11445376	24	2.2	24	85	7	68	56	8	4	32	1.47
11445844--11445893	18	2.8	17	78	9	55	20	0	6	74	1.03
11445844--11445892	17	2.8	17	82	14	55	20	0	6	73	1.04
11447477--11447506	12	2.5	12	94	0	51	50	0	0	50	1.00
11450115--11450162	23	2.1	23	92	3	80	54	2	0	43	1.12
11450405--11450442	11	3.5	11	79	13	51	63	0	0	36	0.95
11451634--11451667	7	4.9	7	100	0	68	58	14	26	0	1.36
11454033--11454084	23	2.3	23	89	0	86	51	11	13	23	1.73
11454754--11454803	10	5.3	9	76	23	50	26	2	0	72	0.96
11454754--11454812	14	4.4	14	71	26	56	28	1	0	69	0.98
11454757--11454812	25	2.3	24	81	12	69	28	1	0	69	0.98
11454880--11454924	23	1.9	24	81	4	56	66	2	4	26	1.22
11455319--11455366	18	2.6	19	77	9	55	72	2	4	20	1.11
11467064--11468614	97	15.9	98	79	7	1460	29	12	20	38	1.89
11467062--11468498	438	3.3	434	87	3	1864	29	12	20	37	1.89
11467064--11468615	50	31.8	50	80	7	1431	29	12	20	38	1.89
11469492--11469820	115	2.9	115	84	4	439	37	12	7	43	1.71
11469492--11469820	58	5.7	57	84	6	380	37	12	7	43	1.71
11469838--11469906	5	13.6	5	80	17	72	79	0	2	17	0.85
11469838--11469872	18	1.9	18	100	0	70	80	0	0	20	0.72
11469838--11469906	6	11.3	6	76	21	56	79	0	2	17	0.85
11470011--11470115	44	2.4	44	80	3	113	20	26	35	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11470441--11470514	31	2.4	31	86	0	94	48	18	9	22	1.77
11470824--11470885	17	3.9	16	84	12	74	70	1	6	20	1.17
11470803--11470969	4	41.8	4	68	15	55	68	1	5	23	1.20
11470802--11470905	46	2.2	48	83	6	133	68	0	6	24	1.20
11470903--11470973	37	2.0	37	83	10	94	70	2	2	23	1.14
11472117--11472156	11	3.5	11	83	6	53	80	0	0	20	0.72
11475812--11475862	24	2.1	24	88	0	75	27	1	0	70	0.98
11475824--11475862	15	2.4	16	83	8	53	23	2	0	74	0.94
11476496--11476521	13	2.0	13	100	0	52	30	7	0	61	1.24
11480494--11480541	25	1.9	25	91	0	78	45	0	6	47	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147