genome.fa.s445.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  52  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10069877--10070033	49	3.2	49	82	3	217	38	21	12	26	1.90
10073757--10073807	21	2.4	22	81	15	63	39	1	1	56	1.22
10074042--10074069	2	14.0	2	100	0	56	50	0	0	50	1.00
10077934--10077993	30	2.0	31	83	3	77	35	15	1	48	1.55
10079201--10079232	11	2.9	11	95	0	55	25	0	28	46	1.53
10079257--10079413	52	3.0	52	86	3	192	38	8	27	25	1.84
10080505--10080551	13	3.5	13	94	5	76	10	0	38	51	1.37
10080507--10080696	14	13.1	14	69	16	86	15	1	33	49	1.54
10080525--10080696	58	2.9	58	79	2	184	15	1	34	48	1.55
10080507--10080696	30	6.6	28	75	9	159	15	1	33	49	1.54
10080962--10081001	12	3.5	12	86	6	57	30	0	0	70	0.88
10082239--10082292	1	54.0	1	77	0	54	3	5	1	88	0.67
10082233--10082292	11	5.2	11	82	9	66	3	8	1	86	0.74
10082623--10082774	36	4.1	37	74	12	100	49	15	17	17	1.80
10082623--10082789	37	4.5	37	75	8	126	49	16	16	17	1.80
10082637--10082789	74	2.1	73	85	6	202	50	15	15	18	1.77
10082786--10082856	22	3.2	21	86	4	88	32	14	22	30	1.93
10082846--10083006	85	1.9	81	87	5	232	35	19	11	34	1.87
10083568--10083616	18	2.7	18	81	12	64	42	12	20	24	1.86
10085331--10085371	11	3.8	11	78	18	50	12	4	2	80	0.97
10091808--10091856	22	2.2	24	89	10	77	16	0	36	46	1.47
10091835--10091895	8	7.8	8	73	10	54	13	0	36	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10091830--10092050	28	7.6	29	84	9	201	14	2	34	48	1.56
10091854--10092050	14	13.8	14	69	14	98	14	2	32	49	1.57
10091837--10092054	114	1.9	116	88	2	332	16	2	33	48	1.58
10093589--10093656	1	68.0	1	73	0	55	1	8	2	86	0.73
10093589--10093656	11	6.5	10	83	8	73	1	8	2	86	0.73
10093587--10093646	21	2.8	22	87	9	88	0	11	1	86	0.64
10102576--10102605	2	15.0	2	100	0	60	50	0	0	50	1.00
10103270--10103319	22	2.2	23	86	10	68	62	2	0	36	1.07
10104798--10104878	26	3.0	26	82	12	85	0	19	1	79	0.81
10104822--10104875	14	4.1	14	76	11	60	0	20	0	79	0.73
10104829--10104877	15	3.3	15	81	18	66	0	24	0	75	0.80
10104818--10104872	23	2.4	24	87	6	78	0	20	0	80	0.72
10104832--10104881	16	3.2	16	78	15	61	0	24	0	76	0.80
10104819--10104882	19	3.1	23	71	24	63	0	23	0	76	0.79
10105941--10105995	17	3.2	17	73	17	51	63	1	3	30	1.22
10106370--10106413	12	3.7	12	87	9	54	79	2	0	18	0.83
10110369--10110645	60	4.7	57	89	6	396	33	14	8	43	1.76
10111643--10111734	37	2.4	38	75	21	95	59	6	1	32	1.30
10111938--10112012	9	8.7	9	81	10	77	1	1	13	84	0.76
10111955--10112019	1	65.0	1	81	0	67	1	0	9	89	0.56
10111946--10112017	36	2.0	37	94	2	128	1	0	11	87	0.61
10112026--10112637	40	15.0	39	87	8	789	37	21	18	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10112026--10112637	82	7.5	81	91	6	913	37	21	18	22	1.94
10113807--10113877	16	4.9	15	85	11	87	7	12	0	80	0.90
10113807--10113875	8	9.6	7	90	6	79	5	13	0	81	0.87
10117126--10117404	60	4.7	59	90	4	415	33	13	8	43	1.75
10117606--10117638	5	6.6	5	92	0	57	0	36	42	21	1.53
10118408--10118499	37	2.4	38	75	21	95	59	6	1	32	1.30
10118710--10118781	1	72.0	1	80	0	72	0	0	11	88	0.50
10118709--10118781	8	8.9	8	87	12	96	0	0	12	87	0.54
10118710--10118781	9	8.4	9	84	15	91	0	0	11	88	0.50
10118709--10118779	35	2.0	36	91	2	117	0	0	12	87	0.55
10118788--10119442	42	16.0	40	89	6	894	37	21	18	22	1.94
10118788--10119442	82	8.0	82	91	6	1062	37	21	18	22	1.94
10120615--10120656	8	5.4	8	91	2	68	9	14	0	76	1.02
10123930--10124223	117	2.5	119	85	9	390	32	12	8	46	1.72
10123930--10124205	57	4.7	59	82	10	320	33	13	8	44	1.74
10124744--10124813	31	2.3	31	82	0	77	21	22	27	28	1.99
10133763--10134136	49	7.4	49	75	14	296	28	12	21	36	1.91
10133921--10133945	11	2.3	11	100	0	50	12	32	28	28	1.92
10133846--10134041	106	1.8	110	90	4	319	28	14	20	36	1.92
10133761--10134114	98	3.5	98	78	14	344	29	12	21	35	1.91
10134102--10134169	33	2.0	34	94	2	120	26	10	22	41	1.85
10134151--10134307	46	3.4	46	89	0	224	29	13	19	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10134004--10134239	130	1.8	131	86	5	343	29	12	22	36	1.90
10134518--10134573	28	2.0	28	86	6	78	10	12	1	75	1.14
10135641--10135696	16	3.2	17	73	12	51	64	1	3	30	1.21
10136667--10136726	31	1.9	31	86	3	84	53	5	0	41	1.23
10137701--10137808	16	7.0	15	67	19	62	28	2	6	62	1.34
10138209--10138263	27	2.2	24	83	9	65	40	5	18	36	1.74
10138282--10138340	31	1.9	31	89	6	93	27	23	22	27	1.99
10138396--10138440	20	2.3	19	84	3	54	26	26	20	26	1.99
10138871--10139323	57	7.7	57	87	8	619	44	7	13	33	1.73
10142775--10142808	17	2.0	17	88	0	50	73	5	17	2	1.16
10143124--10143189	11	6.0	11	81	15	75	78	0	12	9	0.95
10143126--10143208	20	3.8	22	85	9	82	77	0	15	7	0.98
10143144--10143216	8	9.8	8	73	19	52	79	0	13	6	0.92
10143138--10143208	21	3.4	20	88	9	90	78	0	14	7	0.94
10143142--10143208	20	3.2	20	87	8	91	80	0	13	5	0.88
10143144--10143217	29	2.5	29	88	2	103	79	0	13	6	0.91
10144426--10144795	42	9.0	42	91	4	528	23	17	20	37	1.94
10144802--10144900	15	6.5	15	80	9	112	88	7	0	4	0.61
10144802--10144900	1	99.0	1	77	0	99	88	7	0	4	0.61
10145104--10145152	16	2.7	19	78	15	59	32	0	6	61	1.21
10145095--10145239	16	8.8	16	66	22	52	28	2	6	62	1.34
10145177--10145281	56	1.9	55	82	9	133	30	2	4	61	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10146262--10146540	60	4.7	59	90	5	417	44	8	13	33	1.74
10148694--10148907	106	2.0	106	95	0	383	24	26	9	39	1.86
10157062--10157107	23	2.0	22	84	12	58	26	0	8	65	1.21
10163413--10163449	19	2.0	19	89	5	58	54	2	2	40	1.29
10164577--10164686	54	2.0	54	85	3	150	41	10	7	40	1.68
10166035--10166064	13	2.3	13	94	0	51	6	20	0	73	1.05
10166917--10167037	16	7.7	15	66	20	61	31	0	4	63	1.15
10166914--10167035	3	39.3	3	69	23	51	31	0	4	63	1.16
10167149--10167222	32	2.3	31	80	11	78	20	5	4	70	1.24
10167954--10167988	5	7.0	5	86	0	52	20	34	40	5	1.76
10167954--10167988	15	2.3	15	100	0	70	20	34	40	5	1.76
10168007--10168049	22	2.0	21	90	4	68	11	2	4	81	0.93
10168013--10168045	17	1.9	17	88	11	50	12	3	3	81	0.91
10168076--10168145	5	13.4	5	73	19	54	15	7	1	75	1.08
10168083--10168156	26	2.8	26	80	12	87	16	8	1	74	1.12
10168176--10168514	118	2.9	114	90	5	536	44	7	13	34	1.73
10168176--10168514	58	5.8	57	91	4	525	44	7	13	34	1.73
10172349--10172394	23	2.0	23	86	0	65	80	0	19	0	0.71
10173667--10174180	41	12.3	41	83	9	605	22	17	23	36	1.94
10173667--10174180	172	3.1	166	84	10	672	22	17	23	36	1.94
10173639--10174180	85	6.5	81	80	12	539	21	18	22	37	1.94
10174310--10174350	20	2.0	21	90	4	66	26	29	24	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10174403--10174470	9	8.5	8	73	16	52	27	0	2	69	1.03
10174406--10174470	16	4.1	15	76	9	67	27	0	3	69	1.03
10174407--10174469	31	2.1	30	86	13	87	28	0	3	68	1.05
10174414--10174506	47	2.0	47	83	8	118	31	0	5	63	1.17
10174401--10174508	37	2.8	39	76	17	102	30	0	6	62	1.20
10174964--10175018	26	2.2	26	80	12	69	38	5	18	38	1.74
10174966--10175018	25	2.1	25	86	6	72	37	5	16	39	1.73
10175068--10175278	115	1.8	115	90	5	345	43	7	13	35	1.73
10175068--10175278	57	3.6	57	93	1	341	43	7	13	35	1.73
10181862--10181894	10	3.1	11	86	8	50	21	0	0	78	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147