genome.fa.s445.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  95  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17439496--17439527	15	2.1	15	94	0	55	21	3	25	50	1.64
17439510--17439557	22	2.2	22	85	7	62	25	2	20	52	1.58
17443982--17444045	31	2.0	32	90	3	103	43	10	21	23	1.84
17447853--17447926	13	5.8	13	76	6	71	55	9	2	32	1.46
17447828--17447935	24	4.5	24	81	11	114	58	7	1	32	1.37
17447828--17447931	11	9.0	11	78	15	68	57	7	1	32	1.38
17447828--17447933	13	8.8	13	82	6	66	58	7	1	32	1.37
17447881--17447972	34	2.7	35	86	3	116	59	9	3	27	1.44
17447942--17447991	22	2.3	22	89	0	73	62	6	8	24	1.46
17447899--17448020	34	3.5	34	76	7	102	62	9	4	24	1.42
17449406--17449830	126	3.4	123	77	8	381	36	11	8	43	1.72
17450165--17450336	61	2.8	61	77	4	168	39	12	10	37	1.77
17451217--17451316	22	4.6	21	73	10	67	42	9	16	33	1.79
17451282--17451339	22	2.6	22	80	0	62	51	3	12	32	1.56
17451347--17451495	67	2.2	67	80	8	158	41	6	17	34	1.74
17451420--17451479	23	2.7	23	84	2	68	38	8	15	38	1.77
17451638--17451700	22	2.8	23	81	11	69	34	9	20	34	1.85
17452270--17452329	29	2.1	29	100	0	120	20	25	3	51	1.62
17456895--17456929	17	2.0	17	88	5	52	2	34	0	62	1.10
17457295--17457333	11	3.5	11	85	3	51	12	5	5	76	1.11
17457955--17458001	16	2.8	17	84	15	71	74	2	6	17	1.12
17459071--17459108	10	3.8	10	89	10	60	68	0	10	21	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17463840--17463912	12	6.0	12	74	17	62	63	8	4	24	1.40
17464488--17464531	19	2.3	19	80	0	52	68	15	2	13	1.31
17465064--17465089	13	2.0	13	100	0	52	76	0	0	23	0.78
17465056--17465098	22	2.0	22	86	9	61	74	0	4	20	1.00
17473274--17473317	18	2.4	18	82	17	56	36	0	9	54	1.32
17473273--17473318	19	2.5	17	82	10	56	34	0	8	56	1.30
17473477--17473510	11	3.0	11	86	4	50	82	8	0	8	0.85
17473951--17473994	21	2.1	21	87	4	63	40	38	0	20	1.53
17474366--17474410	3	15.3	3	86	4	65	64	4	0	31	1.13
17474413--17474442	3	10.0	3	92	0	51	30	0	33	36	1.58
17474448--17474477	3	10.0	3	92	0	51	66	3	0	30	1.07
17474480--17474580	29	3.6	26	73	16	69	52	3	6	36	1.47
17475103--17475164	23	2.7	23	80	9	65	56	14	1	27	1.48
17475471--17475500	9	3.3	9	95	0	51	0	16	10	73	1.09
17476093--17476134	12	3.3	12	83	9	57	73	0	0	26	0.83
17476170--17476222	22	2.5	22	87	3	72	69	3	7	18	1.28
17476837--17477737	236	3.8	233	80	5	948	33	9	12	45	1.73
17481749--17482134	193	2.0	193	99	0	763	38	11	17	32	1.87
17485222--17485262	3	13.7	3	94	0	73	36	0	0	63	0.95
17485490--17485524	17	2.1	17	89	5	54	40	0	2	57	1.14
17485991--17486028	19	2.0	19	94	0	67	50	18	15	15	1.79
17487170--17487561	144	2.7	145	79	5	357	40	12	11	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17487307--17487589	145	2.0	143	80	4	327	40	12	12	34	1.81
17490242--17490310	34	2.0	34	91	0	111	28	10	15	44	1.79
17495723--17495768	24	1.9	24	86	0	65	36	26	6	30	1.82
17506239--17506264	3	8.7	3	100	0	52	34	65	0	0	0.93
17507090--17507137	25	1.9	25	87	8	71	33	6	2	58	1.35
17509268--17509297	15	2.0	15	93	0	51	43	0	0	56	0.99
17511010--17511050	15	2.8	15	79	17	50	63	0	0	36	0.95
17510996--17511039	22	2.0	22	86	0	61	65	0	0	34	0.93
17511116--17511147	14	2.4	14	94	5	57	68	0	0	31	0.90
17511118--17511148	12	2.5	12	94	5	53	67	0	0	32	0.91
17515510--17515778	147	1.8	146	82	4	344	36	9	4	49	1.56
17515664--17516313	228	2.9	225	79	4	600	34	10	8	46	1.68
17515669--17516282	113	5.5	114	77	4	523	34	10	8	47	1.68
17518491--17518594	52	2.0	52	83	3	129	27	21	6	44	1.77
17519440--17519540	51	2.0	52	88	5	152	31	18	2	46	1.64
17517970--17521500	944	3.7	946	83	3	3947	34	21	8	35	1.84
17521389--17521424	18	2.0	18	89	10	56	22	8	2	66	1.31
17521332--17521432	53	1.9	53	87	0	148	25	13	6	53	1.65
17521389--17521423	17	2.0	18	88	5	54	22	8	2	65	1.34
17526119--17526156	20	1.9	20	100	0	76	26	5	0	68	1.11
17527241--17527340	49	2.0	49	86	0	137	27	15	14	44	1.84
17527294--17527418	55	2.3	55	80	4	135	26	14	11	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17529688--17530039	186	1.9	182	88	5	530	23	23	12	40	1.88
17532777--17532823	3	15.7	3	100	0	94	68	0	0	31	0.90
17533744--17534140	62	6.4	62	69	8	168	32	14	15	37	1.88
17534184--17534369	62	3.0	62	75	9	180	35	13	15	34	1.88
17534900--17534935	16	2.2	16	100	0	72	38	0	11	50	1.38
17536801--17537032	63	3.6	64	80	4	193	35	13	12	39	1.82
17537072--17537335	132	2.0	132	87	0	384	34	14	9	41	1.78
17551269--17551313	21	2.1	21	88	8	65	2	71	0	26	0.98
17551435--17551568	59	2.4	54	78	9	144	19	2	20	56	1.55
17551460--17551579	59	2.0	59	87	3	170	15	3	21	59	1.51
17551653--17551677	12	2.1	12	100	0	50	16	0	0	84	0.63
17551924--17551957	15	2.4	14	90	9	59	41	2	0	55	1.15
17551927--17552015	38	2.4	38	84	5	119	38	1	4	56	1.27
17552897--17552991	49	1.9	49	95	0	172	30	16	15	36	1.91
17554291--17554334	12	3.8	11	79	8	52	0	9	6	84	0.79
17554451--17554503	16	3.7	15	76	21	51	22	0	5	71	1.06
17555988--17556029	12	3.4	12	81	15	50	35	2	2	59	1.23
17555981--17556029	24	2.0	24	88	4	71	32	4	2	61	1.26
17556023--17556061	20	2.0	20	85	10	53	64	0	0	35	0.94
17556029--17556066	15	2.8	14	84	15	53	65	0	0	34	0.93
17570448--17570486	19	2.0	21	85	10	55	43	15	10	30	1.80
17570790--17570842	6	9.0	6	77	4	54	28	3	3	64	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17570798--17570843	23	2.0	23	83	8	58	23	4	6	65	1.35
17570792--17570861	29	2.4	30	83	7	81	22	4	7	65	1.35
17571967--17572009	20	2.2	20	86	0	59	37	4	6	51	1.50
17572997--17573066	34	2.0	35	89	8	108	34	25	7	32	1.83
17576444--17576493	23	2.2	23	89	7	75	80	2	14	4	0.95
17576788--17576852	12	5.6	12	72	18	57	80	7	10	1	0.98
17576799--17576852	23	2.3	23	81	6	65	79	9	9	1	1.00
17577957--17578074	24	5.1	23	71	11	89	38	6	16	38	1.76
17577958--17578076	22	5.2	22	75	13	105	36	7	16	38	1.77
17577952--17578078	46	2.7	47	86	4	168	37	7	16	37	1.78
17578080--17578151	22	3.2	22	71	15	67	37	8	8	45	1.64
17578280--17578379	17	5.8	17	71	15	71	35	13	13	39	1.83
17578415--17578462	17	2.8	17	81	9	62	37	16	8	37	1.79
17578447--17578509	33	1.9	33	90	0	99	33	12	7	46	1.71
17578670--17578798	43	3.0	42	81	8	145	24	14	17	44	1.86
17579039--17579082	12	3.6	12	84	6	61	18	0	11	70	1.16
17579080--17579128	17	3.1	16	77	19	57	73	4	12	10	1.22
17580185--17580224	21	1.9	21	94	0	71	40	5	7	47	1.54
17584111--17584672	145	3.9	142	83	5	691	32	12	12	41	1.81
17586193--17586236	22	2.0	22	82	8	54	54	0	9	36	1.32
17593496--17594404	362	2.5	360	77	5	886	28	22	15	33	1.95
17595596--17595681	41	2.1	42	88	2	129	33	22	13	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17612240--17612328	41	2.1	42	91	6	146	44	0	1	53	1.07
17612348--17612424	41	2.0	40	84	7	104	53	1	1	44	1.17
17612569--17612615	23	2.0	23	87	0	67	59	0	0	40	0.97
17612569--17612629	30	2.1	29	90	3	95	59	0	0	40	0.98
17617308--17617363	15	3.9	14	77	13	60	41	0	0	58	0.98
17617314--17617369	28	2.0	29	92	3	96	42	0	0	57	0.99
17617371--17617417	20	2.3	20	78	7	51	70	2	2	25	1.10
17617396--17617441	23	2.0	24	87	12	69	65	0	0	34	0.93
17619580--17619608	15	1.9	15	100	0	58	6	3	0	89	0.57
17620057--17620096	21	1.9	21	85	10	55	45	2	0	52	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147