genome.fa.s445.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  63  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11882515--11883797	553	2.3	546	83	5	1584	38	11	14	35	1.82
11889985--11890236	134	1.9	134	83	1	326	30	8	16	44	1.77
11894336--11894361	3	8.7	3	100	0	52	34	0	0	65	0.93
11894883--11894926	3	14.7	3	100	0	88	65	0	0	34	0.93
11895813--11895872	25	2.4	25	86	5	77	26	41	16	15	1.88
11907810--11907843	10	3.5	10	88	8	52	88	2	8	0	0.62
11907813--11907857	16	2.8	16	89	3	63	84	2	11	2	0.80
11907811--11907843	9	3.6	9	92	8	57	87	3	9	0	0.63
11908952--11909052	38	2.8	36	82	8	123	24	21	8	44	1.81
11908964--11909244	36	7.9	38	67	18	133	21	21	9	46	1.80
11908877--11910089	103	11.7	103	77	6	847	20	20	12	46	1.83
11909920--11909990	37	1.9	37	85	0	97	22	18	12	46	1.82
11909929--11910185	37	7.1	36	72	7	164	20	18	13	47	1.81
11910551--11910616	3	22.0	3	96	0	105	62	0	4	33	1.16
11910718--11910771	3	18.0	3	100	0	108	66	0	0	33	0.92
11911830--11911883	3	18.0	3	100	0	108	66	0	0	33	0.92
11916695--11917270	196	3.0	190	84	7	702	41	9	3	45	1.55
11920354--11920388	15	2.3	15	90	9	54	2	22	0	74	0.95
11921532--11921565	15	2.3	15	90	5	52	55	0	2	41	1.15
11922131--11922167	15	2.3	17	86	9	51	54	0	5	40	1.24
11921289--11922464	602	1.9	602	87	3	1724	41	12	14	31	1.84
11924194--11924250	27	2.1	27	100	0	114	36	29	7	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11929194--11929225	17	1.9	16	93	6	55	43	0	0	56	0.99
11930120--11930171	22	2.4	22	100	0	104	19	34	23	23	1.96
11930295--11930345	18	2.7	19	75	22	54	25	0	3	70	1.04
11930787--11930843	15	3.7	15	88	4	78	49	29	1	19	1.58
11930787--11930848	8	7.9	8	75	10	56	53	27	1	17	1.53
11930817--11930892	17	4.5	17	78	4	75	46	36	1	15	1.55
11930886--11930928	23	1.9	23	85	4	61	44	27	2	25	1.66
11930907--11931015	29	3.8	29	71	11	98	46	27	0	24	1.59
11930883--11931050	58	2.9	58	79	8	155	46	29	1	23	1.60
11930972--11931082	30	3.8	28	71	15	89	47	29	0	21	1.57
11932555--11932583	9	3.0	10	90	10	51	51	0	0	48	1.00
11932615--11932652	13	2.9	13	84	0	58	36	18	2	42	1.64
11933528--11933571	17	2.6	17	85	7	63	52	0	0	47	1.00
11933489--11933596	55	2.0	55	82	10	132	52	0	1	45	1.11
11933736--11933844	57	1.9	57	88	0	164	38	15	5	40	1.71
11934792--11934847	24	2.2	26	87	6	80	48	0	1	50	1.11
11936105--11936137	12	2.8	12	86	4	50	78	9	0	12	0.95
11936167--11936321	56	2.7	56	88	6	240	34	14	7	43	1.74
11936340--11936415	33	2.3	33	82	11	84	77	2	7	11	1.08
11936338--11936426	27	3.4	27	76	21	91	75	2	11	11	1.14
11936450--11936518	8	7.8	9	81	10	63	81	2	1	14	0.88
11936450--11936518	9	8.0	8	81	15	59	81	2	1	14	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11936483--11936518	19	2.0	19	89	10	58	88	0	0	11	0.50
11937461--11937525	19	3.4	19	81	14	62	72	1	0	26	0.94
11937429--11937525	9	9.8	9	71	15	52	70	2	1	26	1.05
11937464--11937544	40	2.0	43	82	7	105	69	2	0	28	1.02
11937499--11937546	14	3.2	14	80	19	53	62	2	0	35	1.07
11937429--11937546	28	4.1	31	70	22	80	67	2	0	28	1.09
11937435--11937548	37	3.0	38	76	15	96	67	3	0	28	1.13
11938124--11938171	18	2.7	18	78	12	53	22	0	4	72	1.01
11938162--11938210	21	2.3	21	85	3	62	32	2	12	53	1.50
11938179--11938222	19	2.2	21	84	8	56	36	0	11	52	1.38
11938554--11938638	31	2.8	32	77	11	83	49	30	1	18	1.55
11938554--11938638	14	5.6	14	74	13	71	49	30	1	18	1.55
11941016--11941058	22	2.0	22	81	9	52	46	0	2	51	1.13
11941057--11941106	15	3.1	18	81	16	56	60	0	0	40	0.97
11944275--11944322	21	2.3	21	92	0	78	35	20	8	35	1.83
11944375--11944473	51	1.9	51	93	0	171	26	10	15	48	1.76
11951634--11951679	24	2.0	22	83	8	56	76	4	2	17	1.06
11952821--11952847	2	13.5	2	100	0	54	51	0	0	48	1.00
11957956--11958005	19	2.5	20	79	20	61	36	0	0	64	0.94
11957930--11958029	51	2.0	50	80	11	114	41	1	1	57	1.12
11958115--11958147	13	2.4	14	85	10	50	69	0	3	27	1.03
11958103--11958158	23	2.4	23	79	5	69	62	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11961109--11961139	16	1.9	16	93	0	53	12	41	0	45	1.42
11965279--11965311	15	2.1	16	88	5	50	18	15	9	57	1.63
11966262--11966320	26	2.2	27	82	8	68	28	0	5	66	1.13
11966272--11966322	26	1.9	26	88	4	75	29	0	3	66	1.09
11967480--11967538	18	3.2	18	83	9	82	16	3	8	71	1.25
11967478--11967538	20	3.2	20	73	17	65	16	3	8	72	1.23
11969050--11969356	170	1.8	166	87	4	454	20	15	21	42	1.89
11970979--11971174	78	2.5	78	86	5	272	32	21	21	23	1.98
11976556--11976590	17	1.9	17	88	11	52	20	0	0	80	0.72
11976556--11976587	9	3.4	10	87	12	50	18	0	0	81	0.70
11976554--11976595	21	2.0	21	81	9	50	21	0	2	76	0.90
11976908--11976971	32	2.0	31	85	11	85	60	0	1	37	1.06
11977514--11977578	32	2.0	32	84	0	85	52	0	0	47	1.00
11997043--11997099	22	2.6	22	88	5	80	54	7	8	29	1.58
11997203--11997565	82	4.5	83	79	14	325	54	1	2	41	1.21
11997203--11997508	59	5.1	59	76	13	266	54	1	1	42	1.18
11997247--11997426	36	5.0	36	73	20	117	54	1	1	42	1.17
11997453--11997550	23	4.1	23	84	4	124	57	0	4	38	1.18
11997203--11997556	41	8.4	44	72	17	227	54	1	2	42	1.20
11997647--11997696	26	2.0	25	88	4	73	50	6	0	44	1.26
11997793--11997871	11	6.8	12	72	18	53	55	1	1	41	1.16
11997807--11997936	48	2.7	48	79	14	121	50	1	1	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11997933--11997996	26	2.5	26	90	5	96	50	4	0	45	1.22
11998104--11998145	14	2.9	14	82	3	57	42	7	2	47	1.43
11999088--11999126	5	7.6	5	88	5	60	0	20	0	79	0.73
12001861--12001904	20	2.3	19	92	4	70	31	0	0	68	0.90
12001861--12001906	10	4.7	10	81	5	58	34	0	0	65	0.93
12005907--12006207	152	2.0	152	95	0	539	44	16	12	25	1.84
12016266--12016307	12	3.6	12	84	12	52	76	0	0	23	0.79
12017201--12017244	20	2.2	20	88	8	63	34	0	0	65	0.93
12016925--12017702	390	2.0	391	95	1	1407	42	9	4	42	1.59
12018809--12018879	37	1.9	37	91	0	115	22	18	11	47	1.80
12032785--12032826	22	1.9	22	100	0	84	52	21	9	16	1.72
12034503--12034542	20	2.0	20	100	0	80	30	20	15	35	1.93
12039949--12040086	8	15.9	8	72	15	80	38	1	5	54	1.34
12040046--12040086	3	14.3	3	90	10	68	34	0	0	65	0.93
12040046--12040086	17	2.4	17	100	0	82	34	0	0	65	0.93
12044512--12044583	27	2.5	28	82	6	74	40	4	6	48	1.49
12045550--12045629	23	3.8	21	72	20	60	60	3	2	33	1.28
12045582--12045626	23	1.9	24	86	4	65	60	0	2	37	1.09
12047844--12047889	6	7.7	6	85	0	65	0	47	2	50	1.13
12052147--12052186	20	2.1	19	95	4	71	65	0	0	35	0.93
12060003--12060034	12	2.8	12	95	4	57	59	0	0	40	0.97
12061159--12061185	14	1.9	14	100	0	54	44	0	14	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12061382--12061775	13	30.3	13	68	22	192	54	2	1	41	1.22
12061370--12061809	18	24.4	18	67	23	175	55	2	1	41	1.21
12061370--12061797	41	9.7	44	72	19	276	54	2	1	41	1.21
12061434--12061796	28	13.4	28	68	23	103	54	2	0	41	1.20
12061602--12061797	67	2.9	67	93	4	317	55	2	1	41	1.20
12061672--12061806	31	4.2	29	71	21	85	56	1	0	41	1.14
12061411--12061809	23	19.6	20	68	24	123	55	2	1	41	1.21
12061838--12061953	26	4.5	26	69	13	80	46	1	0	51	1.11
12061854--12061878	13	1.9	13	100	0	50	52	0	0	48	1.00
12061894--12061953	26	2.3	26	91	2	95	48	1	0	50	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147