genome.fa.s445.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  84  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15494002--15494037	16	2.2	17	90	9	58	58	0	0	41	0.98
15494002--15494042	16	2.7	15	85	14	57	60	0	0	39	0.96
15494184--15494225	18	2.4	18	88	4	59	45	2	0	52	1.13
15503004--15503068	32	2.0	32	84	0	85	47	4	4	43	1.44
15502997--15503066	16	4.3	16	83	1	77	48	4	4	42	1.42
15503669--15503727	24	2.4	25	77	5	59	59	0	0	40	0.97
15506978--15507004	2	13.5	2	100	0	54	51	0	0	48	1.00
15507002--15507028	4	6.8	4	100	0	54	51	0	22	25	1.48
15510864--15510888	12	2.1	12	100	0	50	24	8	16	52	1.70
15517067--15517104	19	2.0	19	94	0	67	23	15	18	42	1.89
15519855--15519902	23	2.1	23	92	0	78	31	0	18	50	1.48
15524393--15524417	13	1.9	13	100	0	50	0	24	0	76	0.80
15526920--15526997	39	2.1	39	81	13	92	55	15	0	29	1.41
15539340--15539392	25	2.2	23	83	6	70	73	1	11	13	1.18
15545740--15545891	61	2.5	61	85	6	202	37	11	2	48	1.54
15545898--15546090	57	3.2	59	83	6	219	37	7	4	50	1.49
15545830--15545982	71	2.1	71	80	4	173	37	8	4	49	1.54
15545898--15546094	62	3.3	61	81	9	235	38	7	4	50	1.49
15546068--15546106	14	2.6	15	80	12	53	23	5	5	66	1.32
15548028--15548326	40	7.4	40	82	4	289	41	19	13	25	1.88
15548520--15548581	23	2.7	23	76	0	61	33	17	9	38	1.83
15548781--15548914	25	5.5	25	85	7	195	40	14	8	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15549265--15549428	70	2.3	71	79	1	186	31	29	6	32	1.82
15549818--15549846	15	1.9	15	100	0	58	51	13	0	34	1.42
15550057--15550115	19	2.8	19	80	16	64	8	11	0	79	0.93
15550437--15551349	305	3.0	300	86	5	1245	30	13	13	42	1.83
15553572--15553605	17	2.0	17	88	0	50	50	5	17	26	1.69
15554742--15554905	60	2.7	61	84	3	215	39	11	4	43	1.62
15554833--15554879	18	2.6	18	80	13	51	46	4	8	40	1.54
15556840--15556890	23	2.3	22	80	12	59	72	0	7	19	1.08
15568171--15568212	21	2.0	21	85	4	57	33	21	11	33	1.90
15570272--15571166	357	2.5	356	84	2	1114	37	13	11	36	1.81
15570557--15572165	798	2.0	802	85	2	2158	37	12	11	38	1.80
15572488--15572565	38	2.1	38	100	0	156	29	19	10	41	1.84
15576869--15576901	5	6.6	5	86	13	50	78	3	18	0	0.87
15585382--15585412	15	2.1	15	93	0	53	77	9	0	12	0.99
15585391--15585447	11	4.8	11	75	14	51	77	8	5	8	1.13
15585382--15585447	25	2.6	26	85	4	89	77	9	4	9	1.12
15586832--15586922	15	5.9	15	73	10	58	46	35	2	16	1.59
15586823--15586907	31	2.7	31	73	8	82	45	35	2	16	1.60
15586935--15586965	16	1.9	16	93	0	53	45	35	0	19	1.51
15593504--15593548	12	3.6	12	88	8	63	88	6	4	0	0.61
15594801--15595246	33	13.7	33	86	3	566	28	20	16	33	1.95
15594801--15595246	98	4.6	99	87	3	566	28	20	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15595927--15595962	17	2.1	17	100	0	72	33	0	16	50	1.46
15595806--15596088	138	2.0	138	96	0	521	32	13	16	38	1.87
15595944--15596230	121	2.4	121	92	0	475	32	14	16	36	1.89
15596218--15596267	22	2.3	22	92	0	82	32	24	18	26	1.97
15596338--15596389	22	2.3	23	83	9	72	28	19	15	36	1.92
15596355--15596399	22	2.0	22	86	0	63	28	22	15	33	1.95
15596200--15596635	132	3.3	130	85	3	563	24	21	18	35	1.96
15596463--15596530	23	3.0	23	86	2	93	26	22	23	27	1.99
15596250--15596636	132	2.9	133	89	3	575	23	21	18	35	1.95
15596596--15596640	22	2.0	23	91	4	74	22	22	26	28	1.99
15596486--15596688	110	1.8	110	86	2	291	25	20	17	37	1.93
15596859--15596913	15	3.9	15	77	15	64	78	9	0	12	0.97
15596868--15596910	13	3.4	12	87	9	59	76	9	0	13	1.01
15596867--15596940	12	5.8	12	77	15	69	77	8	4	10	1.12
15597010--15597082	36	2.0	36	94	0	128	50	24	8	16	1.72
15598377--15598464	16	5.8	15	80	6	79	50	34	1	14	1.51
15598377--15598468	31	3.1	31	78	4	91	51	33	1	14	1.49
15598367--15598464	15	6.5	15	77	8	65	48	33	1	16	1.53
15599831--15599860	11	2.8	11	95	5	53	56	6	10	26	1.57
15603460--15603498	18	2.2	18	95	0	69	28	28	15	28	1.96
15604756--15604926	87	2.0	87	90	2	272	35	16	16	31	1.92
15609229--15609297	20	3.4	19	74	20	59	23	5	0	71	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15609348--15609380	17	1.9	17	93	0	57	9	18	6	66	1.40
15610449--15610506	30	1.9	30	85	0	80	46	0	1	51	1.11
15610444--15610494	14	3.6	14	75	12	50	43	0	1	54	1.11
15610862--15610901	14	2.9	14	85	7	55	62	0	2	35	1.09
15612559--15612626	13	5.4	12	73	18	50	22	2	1	73	1.05
15612559--15612626	7	10.8	6	74	16	50	22	2	1	73	1.05
15612564--15612602	18	2.2	18	86	9	53	20	5	0	74	1.01
15612570--15612651	42	1.9	42	80	11	96	21	1	2	74	1.01
15614127--15614186	30	2.0	30	100	0	120	43	20	6	30	1.77
15621709--15621753	20	2.2	20	80	11	56	31	0	11	57	1.33
15621698--15621753	21	2.8	21	78	8	62	28	0	14	57	1.38
15622047--15622117	27	2.6	29	82	8	85	28	5	14	52	1.64
15622047--15622110	14	4.6	14	73	21	55	26	6	15	51	1.67
15622070--15622118	14	3.4	15	77	8	57	28	4	10	57	1.50
15622464--15622490	2	13.5	2	100	0	54	48	0	0	51	1.00
15623266--15623305	20	1.9	22	85	10	57	37	0	5	57	1.21
15634394--15634460	29	2.4	28	78	7	82	35	1	14	47	1.54
15634406--15634471	29	2.3	30	86	5	91	34	0	16	48	1.47
15643064--15643266	87	2.3	87	83	2	255	32	13	14	38	1.86
15643064--15643289	87	2.6	86	82	3	220	32	14	14	38	1.86
15643312--15643350	20	2.0	20	90	5	62	33	20	15	30	1.94
15644149--15644191	21	2.0	22	86	4	61	81	0	11	6	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15646511--15646655	78	1.8	79	85	4	204	35	10	15	38	1.82
15646590--15646687	30	3.1	29	70	18	72	29	12	17	40	1.86
15646590--15646719	64	2.0	64	88	2	190	30	10	19	40	1.85
15646504--15646815	143	2.2	142	81	5	344	35	12	16	36	1.85
15646759--15646846	30	2.8	32	78	11	101	37	15	12	34	1.86
15646522--15646850	143	2.3	143	77	4	317	34	13	15	36	1.86
15646797--15646964	61	2.8	59	79	4	158	34	16	16	32	1.91
15646734--15646964	61	3.8	61	76	8	150	35	16	16	32	1.90
15649882--15649929	20	2.5	19	80	12	53	50	22	6	20	1.71
15649873--15650069	58	3.4	57	76	4	171	48	27	7	16	1.72
15649882--15650069	19	9.7	19	68	16	77	47	28	6	17	1.73
15650025--15650109	35	2.5	33	76	14	82	50	23	4	21	1.67
15652850--15652889	21	2.0	20	85	5	53	5	15	15	65	1.44
15655904--15655932	2	14.5	2	100	0	58	51	0	0	48	1.00
15655914--15656382	234	2.0	234	99	0	929	46	5	11	36	1.64
15664206--15664464	129	2.0	129	94	0	455	46	15	11	26	1.79
15667807--15667865	29	2.0	29	96	0	109	32	27	11	28	1.92
15672002--15672051	17	2.9	16	80	11	55	22	0	2	76	0.89
15672007--15672060	27	1.9	29	81	7	67	24	3	1	70	1.13
15672071--15672111	17	2.4	17	95	4	73	29	0	9	60	1.28
15672743--15672774	15	2.1	15	94	0	55	37	9	0	53	1.34
15674878--15675319	201	2.2	197	79	6	480	38	15	19	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15680781--15680805	2	12.5	2	100	0	50	52	48	0	0	1.00
15683010--15683056	21	2.4	19	82	10	58	59	19	2	19	1.48
15694747--15694809	26	2.5	26	84	2	83	46	1	3	49	1.27
15694773--15694859	16	5.5	15	72	18	61	50	0	1	48	1.08
15694897--15694945	22	2.1	24	85	7	66	44	0	2	53	1.12
15694954--15694994	18	2.3	18	91	0	64	43	0	4	51	1.23
15694896--15695007	16	6.9	16	73	10	77	44	0	2	52	1.15
15695176--15695205	14	2.1	14	93	0	51	43	13	0	43	1.43
15696460--15696518	23	2.6	23	81	5	75	32	15	5	47	1.67
15701942--15701971	15	2.0	15	93	0	51	43	33	0	23	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147