genome.fa.s445.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  36  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7391453--7391566	22	5.2	22	83	0	111	48	6	5	40	1.51
7392000--7392036	3	12.3	3	100	0	74	67	0	0	32	0.91
7394177--7394230	17	3.2	17	73	23	51	62	0	0	37	0.95
7397027--7397051	13	1.9	13	100	0	50	28	0	0	72	0.86
7401204--7401241	7	5.4	7	90	0	58	81	0	0	18	0.69
7401187--7401241	27	2.0	27	85	3	74	74	0	0	25	0.82
7401190--7401242	14	3.9	14	82	5	63	73	0	0	26	0.83
7401186--7401249	21	3.0	21	75	4	67	68	1	0	29	0.99
7405421--7405495	34	2.2	34	92	2	125	20	14	17	48	1.82
7411859--7411886	2	14.0	2	100	0	56	50	0	0	50	1.00
7412072--7412096	2	12.5	2	100	0	50	48	0	0	52	1.00
7412695--7412731	3	12.3	3	100	0	74	64	0	0	35	0.94
7413548--7413587	17	2.3	17	95	4	71	47	5	10	37	1.59
7413909--7413954	3	15.3	3	88	8	67	69	0	2	28	1.00
7414355--7414398	22	2.0	22	86	4	61	47	36	0	15	1.46
7416816--7416878	26	2.5	25	80	12	83	65	1	0	33	1.03
7416831--7416899	22	3.3	21	76	9	70	66	0	1	31	1.00
7419588--7419638	20	2.5	22	75	21	56	60	0	15	23	1.35
7421040--7421086	2	24.0	2	86	4	69	48	2	2	46	1.25
7421752--7421784	2	16.5	2	100	0	66	51	0	0	48	1.00
7434085--7434868	391	2.0	391	95	1	1421	35	10	8	46	1.68
7436173--7436677	43	11.6	44	78	3	461	42	15	15	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7436173--7436677	87	5.8	86	82	2	533	42	15	15	26	1.87
7441033--7441084	24	2.1	25	82	3	61	36	7	19	36	1.80
7441817--7441880	31	2.1	31	96	0	119	39	12	21	26	1.89
7446018--7446082	29	2.3	29	78	7	71	55	1	0	43	1.09
7446835--7446885	23	2.2	23	82	10	59	78	3	7	9	1.07
7446835--7446886	24	2.2	23	80	10	61	78	3	7	9	1.06
7446825--7446888	33	2.0	32	84	3	83	76	4	7	10	1.14
7448542--7448612	35	2.0	36	88	2	108	54	4	9	30	1.52
7450123--7450201	11	6.8	12	72	18	62	69	0	2	27	1.01
7450125--7450196	18	3.9	18	77	15	67	69	0	2	27	1.02
7450133--7450198	25	2.7	25	77	9	73	69	0	3	27	1.03
7450129--7450210	25	3.3	24	75	11	69	68	0	3	28	1.06
7450293--7450331	19	2.1	18	95	4	69	71	15	5	7	1.26
7451117--7451179	29	2.1	30	82	8	76	63	6	28	1	1.28
7453051--7453326	61	4.6	60	77	10	267	38	13	6	42	1.69
7453051--7453336	60	4.7	60	77	9	278	37	12	5	44	1.67
7453051--7453337	121	2.4	124	85	6	367	36	12	6	44	1.68
7453360--7453483	5	24.8	5	72	23	93	76	1	1	20	0.95
7453357--7453483	9	13.3	9	76	14	96	77	1	1	19	0.94
7453984--7454036	24	2.1	26	86	10	74	56	15	0	28	1.39
7454111--7454148	19	2.1	18	85	9	51	5	39	2	52	1.38
7454345--7454476	20	6.4	20	68	13	61	67	2	5	25	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7454380--7454496	21	5.4	21	74	17	89	63	2	4	29	1.27
7454604--7454654	7	7.1	7	81	16	52	76	1	0	21	0.88
7454593--7454657	12	5.3	12	79	18	55	75	3	0	21	0.94
7454570--7454626	25	2.2	25	78	3	60	68	5	5	21	1.29
7454832--7455020	42	4.4	43	88	6	276	37	21	15	24	1.93
7454832--7455020	85	2.2	87	90	5	312	37	21	15	24	1.93
7455110--7455213	41	2.5	41	90	1	163	41	17	16	25	1.89
7455507--7455588	43	1.9	42	87	7	121	37	14	9	37	1.79
7455772--7455812	22	1.9	21	90	5	64	34	17	9	39	1.82
7457076--7457129	8	6.8	8	73	23	51	9	11	0	79	0.93
7457075--7457147	33	2.3	32	88	11	114	9	13	0	76	1.01
7457075--7457132	18	3.5	18	68	27	56	8	12	0	79	0.94
7457084--7457143	22	2.7	22	82	12	70	8	13	0	78	0.96
7463004--7463033	15	2.0	15	93	0	51	43	10	13	33	1.77
7463335--7463369	2	17.5	2	93	0	61	45	0	2	51	1.16
7463703--7463735	7	4.7	7	100	0	66	27	12	0	60	1.32
7463724--7463800	26	3.2	25	75	21	74	18	2	5	74	1.13
7470228--7470277	25	2.0	25	88	0	73	52	10	0	38	1.35
7470242--7470288	25	2.0	24	87	8	69	57	8	0	34	1.29
7470634--7470676	19	2.2	20	87	4	61	62	0	4	32	1.15
7472892--7472929	15	2.4	16	82	13	51	18	2	0	78	0.86
7473124--7473204	26	3.2	25	63	13	65	34	8	11	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7473109--7473212	52	2.0	52	100	0	208	34	9	9	46	1.69
7474930--7474973	22	2.0	22	90	0	70	34	11	11	43	1.77
7478251--7478286	17	2.1	18	94	5	65	75	5	11	8	1.19
7478266--7478313	15	3.4	14	80	5	53	72	10	10	6	1.26
7479451--7479490	16	2.6	16	92	4	64	50	27	2	20	1.61
7485255--7485284	14	2.1	14	93	0	51	90	0	10	0	0.47
7486112--7486655	33	16.5	33	84	5	663	28	20	15	34	1.94
7486113--7486655	98	5.5	98	87	3	725	28	20	16	34	1.94
7486810--7486892	41	2.0	41	81	13	98	30	20	15	33	1.94
7487397--7487468	36	2.0	36	86	5	101	25	18	15	41	1.89
7487359--7487720	109	3.3	109	84	2	422	24	19	17	37	1.94
7487756--7487947	89	2.2	89	81	2	226	23	19	17	39	1.92
7487954--7488057	22	4.8	22	77	7	88	27	25	19	27	1.98
7487925--7488025	21	4.8	21	78	7	96	29	21	16	31	1.96
7488240--7488724	34	13.9	34	67	14	202	20	18	12	47	1.82
7488169--7488890	105	6.9	105	85	0	869	22	18	12	46	1.83
7489689--7489736	15	3.4	14	77	5	53	70	10	10	8	1.33
7490590--7490630	3	13.7	3	100	0	82	31	0	0	68	0.90
7490858--7490929	16	4.8	16	78	13	82	51	29	1	18	1.54
7492970--7493013	22	2.0	22	95	0	79	31	11	13	43	1.80
7494845--7494872	2	14.0	2	100	0	56	50	0	0	50	1.00
7496924--7496978	23	2.4	23	79	11	60	27	3	7	61	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7497185--7497284	49	2.0	49	96	0	182	45	17	3	35	1.63
7497961--7498252	148	2.0	146	85	4	399	41	7	13	38	1.72
7498864--7498930	22	3.1	22	69	12	59	52	4	10	32	1.56
7498914--7498963	22	2.3	22	82	0	64	56	4	6	34	1.43
7504669--7504711	22	2.0	22	86	9	61	48	9	6	34	1.62
7508462--7508565	6	17.7	6	75	14	76	17	1	1	78	0.93
7508452--7508536	22	3.8	22	76	13	66	17	3	1	77	0.97
7508462--7508566	15	7.8	13	74	19	76	17	1	1	79	0.92
7508462--7508568	13	8.1	12	69	25	65	16	1	1	79	0.91
7508672--7508715	21	2.0	22	91	4	72	25	4	0	70	1.06
7509571--7509675	5	19.6	5	75	13	52	18	5	2	73	1.16
7509602--7509675	22	3.4	22	75	15	64	13	8	1	77	1.06
7509623--7509663	11	3.8	10	84	15	55	12	2	2	82	0.86
7509610--7509675	17	3.9	17	80	7	73	12	9	1	77	1.06
7509698--7509919	61	3.7	60	86	5	306	44	5	13	35	1.69
7517457--7517501	19	2.3	19	88	3	63	2	20	0	77	0.87
7522690--7522753	31	2.1	31	96	0	119	39	12	21	26	1.89
7527286--7527318	9	3.7	9	92	8	50	75	0	0	24	0.80
7528683--7528731	24	2.1	23	82	17	57	67	0	8	24	1.18
7529432--7529500	36	2.0	34	86	8	95	53	2	10	33	1.49
7529432--7529502	35	2.0	36	91	2	117	54	2	9	32	1.48
7530491--7531197	353	2.0	353	95	1	1283	30	12	13	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7531361--7531439	11	6.8	12	75	18	71	70	0	1	27	0.95
7531358--7531440	7	11.2	8	76	22	51	71	0	1	27	0.94
7531361--7531442	10	7.8	11	75	22	63	70	0	1	28	0.95
7531365--7531448	25	3.4	25	76	12	84	70	0	2	27	1.00
7531535--7531575	21	2.0	20	90	9	66	73	14	4	7	1.22
7532357--7532418	29	2.1	30	85	8	83	62	6	29	1	1.29
7532390--7532421	16	2.0	17	88	11	50	59	9	31	0	1.29
7537953--7537984	2	16.0	2	93	0	55	46	0	3	50	1.17
7542364--7542414	20	2.5	20	93	0	93	43	11	3	41	1.60
7542898--7542981	3	29.3	3	83	9	95	32	2	3	61	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147