Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  20  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4288037--4288105
15
4.3
15
90
5
84
43
1
0
55
1.08
4291599--4291623
11
2.3
11
100
0
50
28
0
16
56
1.41
4291642--4291700
30
2.0
30
86
6
84
27
10
20
42
1.84
4292067--4292104
15
2.6
15
87
4
51
23
2
2
71
1.12
4292071--4292139
4
16.5
4
71
14
50
21
4
2
71
1.17
4292201--4292732
60
9.1
59
81
7
527
46
6
12
34
1.66
4292200--4292732
120
4.5
120
82
7
594
46
6
12
34
1.66
4303328--4303531
57
3.7
54
78
8
182
55
11
16
17
1.69
4303505--4303671
45
3.5
45
70
18
124
45
13
19
20
1.85
4304562--4304827
85
3.1
85
86
1
383
21
13
16
48
1.81
4305972--4306031
23
2.6
23
76
10
68
21
3
3
71
1.15
4305970--4306035
4
17.0
4
73
6
55
22
3
3
71
1.14
4306123--4306802
120
5.7
119
78
12
606
45
6
13
35
1.68
4306123--4306801
59
11.3
59
79
10
616
45
6
13
35
1.68
4306403--4306492
27
3.2
27
66
23
69
45
5
12
36
1.65
4306541--4306679
69
2.0
71
84
5
185
42
5
15
36
1.70
4306481--4306738
128
2.0
130
86
7
366
43
5
14
36
1.68
4306423--4306798
188
2.0
188
84
7
487
45
5
13
35
1.67
4307366--4307414
26
1.9
25
91
4
80
32
10
16
40
1.82
4313351--4313377
2
13.5
2
100
0
54
51
0
0
48
1.00
4314873--4314929
21
2.7
23
78
10
59
45
0
1
52
1.11
4314863--4314936
24
3.0
23
76
9
76
45
0
1
52
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4319193--4319224
2
17.0
2
87
12
50
46
0
0
53
1.00
4319972--4319999
6
4.7
6
100
0
56
17
32
32
17
1.94
4320656--4320687
16
2.0
16
93
0
55
43
21
0
34
1.53
4322515--4322721
108
1.9
108
90
0
333
24
25
12
38
1.90
4327962--4328277
164
2.0
161
81
8
376
48
10
6
34
1.64
4328198--4328228
15
2.1
15
93
0
53
83
9
0
6
0.79
4328544--4328584
2
20.5
2
89
0
64
46
2
2
48
1.28
4329063--4329127
29
2.2
30
81
10
73
63
1
6
29
1.28
4329201--4329234
9
3.7
9
84
7
50
44
0
0
55
0.99
4329611--4329687
27
2.9
27
81
14
72
36
6
3
53
1.45
4330994--4331074
25
3.3
25
80
13
105
37
0
3
59
1.15
4330994--4331084
25
3.7
24
73
16
71
37
0
3
59
1.14
4331134--4331188
8
6.4
8
76
15
56
49
0
0
50
1.00
4331134--4331168
17
2.1
17
94
0
61
45
0
0
54
0.99
4332138--4332177
12
3.8
11
84
15
50
5
0
15
80
0.88
4332352--4332729
107
3.6
105
80
5
413
33
16
16
33
1.92
4333495--4333523
14
2.0
15
93
6
51
37
13
27
20
1.91
4334982--4335040
20
3.0
20
76
19
61
10
15
0
74
1.06
4335000--4335056
19
3.2
19
83
9
59
5
12
0
82
0.82
4335017--4335054
14
2.6
15
83
4
51
5
7
0
86
0.69
4343208--4343238
8
4.0
8
95
4
55
0
9
0
90
0.46
4343308--4343345
16
2.4
16
100
0
76
57
31
0
10
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4343708--4343732
6
4.2
6
100
0
50
0
16
0
84
0.63
4344165--4344508
144
2.4
145
79
2
370
43
10
12
33
1.77
4359328--4359555
22
10.4
22
66
13
78
32
17
16
33
1.92
4359453--4359549
44
2.2
44
82
8
110
32
19
15
31
1.93
4359477--4359686
65
3.2
65
76
7
183
32
18
14
34
1.91
4359510--4359598
22
4.1
22
72
13
67
35
20
13
30
1.91
4363273--4363336
24
2.6
24
82
2
74
53
0
0
46
1.00
4366061--4366087
13
2.1
13
100
0
54
55
0
0
44
0.99
4366940--4366997
25
2.6
21
75
19
62
48
3
1
46
1.29
4366943--4366991
25
2.0
25
92
4
82
48
4
2
44
1.33
4367065--4367113
21
2.3
22
89
6
75
48
0
4
46
1.20
4367224--4367281
10
6.2
10
74
22
63
58
0
0
41
0.98
4367238--4367302
19
3.0
21
74
19
62
53
1
0
44
1.09
4367217--4367351
36
3.7
36
73
12
107
51
0
1
45
1.15
4367217--4367277
17
3.3
18
79
9
70
59
0
0
40
0.98
4367227--4367287
17
3.5
17
73
18
63
54
0
0
45
1.00
4367215--4367315
46
2.2
46
81
8
109
54
0
0
44
1.06
4372959--4372998
21
2.0
20
90
9
64
30
0
0
70
0.88
4382110--4382300
18
10.8
18
67
19
84
51
3
0
45
1.17
4382135--4382329
15
12.8
15
67
23
70
53
3
0
42
1.22
4383002--4383043
22
1.9
22
90
0
66
33
11
9
45
1.73
4383255--4383318
25
2.7
24
88
7
94
15
26
18
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4396393--4396704
130
2.4
130
83
2
376
41
9
16
32
1.80
4396390--4396737
65
5.3
65
73
7
240
40
10
16
32
1.83
4397991--4398029
15
2.6
15
95
0
69
17
28
28
25
1.98
4401964--4402071
53
2.0
53
94
0
189
29
23
12
35
1.91
4409499--4409530
14
2.1
16
88
11
50
59
0
0
40
0.97
4409597--4410494
11
85.0
11
62
19
82
41
3
4
50
1.38
4409604--4409662
21
2.8
21
87
5
84
47
1
3
47
1.29
4409650--4409829
31
5.9
30
73
15
131
40
1
2
55
1.22
4409680--4409731
17
3.3
16
75
22
56
40
1
0
57
1.10
4409595--4409758
72
2.3
71
77
12
165
43
1
2
52
1.25
4409798--4409830
17
1.9
17
93
0
57
51
0
0
48
1.00
4409852--4409952
21
4.8
22
79
9
113
50
0
4
43
1.30
4409853--4409952
42
2.4
43
84
3
141
50
1
5
44
1.30
4410141--4410217
36
2.2
35
82
11
88
42
1
6
49
1.36
4410188--4410289
21
4.9
21
79
5
100
46
1
3
48
1.32
4410411--4410453
14
2.9
15
79
10
52
30
2
0
67
1.03
4410430--4410492
21
3.0
22
78
17
71
36
0
1
61
1.05
4410427--4410503
10
7.7
10
70
24
56
37
0
1
61
1.05
4410585--4410685
10
9.6
10
70
20
57
52
1
1
43
1.23
4410568--4410639
27
2.7
25
79
12
72
50
1
0
48
1.09
4410670--4410735
30
2.2
30
86
5
89
60
4
6
28
1.40
4415053--4415120
30
2.1
33
84
13
88
57
0
1
41
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4415084--4415127
22
2.0
23
87
12
67
59
0
0
40
0.98
4416917--4416941
13
1.9
13
100
0
50
48
0
48
4
1.20
4417832--4417878
2
23.5
2
91
0
76
46
0
48
4
1.21
4420982--4421022
14
3.0
13
86
10
55
39
0
0
60
0.96
4421852--4421936
29
3.0
28
81
11
93
51
0
1
47
1.08
4430959--4431027
22
3.0
21
79
12
57
73
1
2
21
1.04
4430959--4431003
17
2.6
16
86
10
54
75
0
4
20
0.97
4430973--4431028
23
2.3
23
84
9
67
75
1
1
21
0.99
4430995--4431022
13
2.2
13
100
0
56
78
0
0
21
0.75
4432154--4432195
18
2.3
18
100
0
84
40
14
14
30
1.85
4432524--4432572
24
2.0
24
84
7
64
34
6
6
53
1.51
4434175--4434220
18
2.8
16
81
12
56
30
2
2
65
1.16
4434742--4434782
21
1.9
21
85
5
55
63
2
2
31
1.20
4438268--4438319
22
2.4
22
87
6
70
40
7
3
48
1.50
4438234--4438388
10
16.3
9
66
26
56
37
5
4
52
1.44
4438326--4438395
3
24.3
3
73
13
58
32
4
1
61
1.24
4439202--4439274
24
2.9
24
78
11
83
16
5
4
73
1.17
4439214--4439271
27
2.1
28
83
3
73
17
5
5
72
1.22
4439356--4439394
17
2.2
17
90
4
60
58
10
0
30
1.31
4448281--4448716
126
3.6
120
82
6
479
26
7
29
36
1.83
4449840--4449871
16
2.0
16
93
0
55
31
15
15
37
1.89
4451511--4451603
47
2.0
47
85
4
125
36
5
20
37
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4453944--4453983
19
2.1
19
86
9
55
30
0
0
70
0.88
4454011--4454051
17
2.4
17
83
0
55
29
0
7
63
1.21
4454507--4454555
20
2.4
21
86
3
64
22
6
0
71
1.08
4454512--4454568
17
3.2
18
82
12
55
21
3
3
71
1.15
4465631--4465664
2
17.0
2
87
0
50
44
0
5
50
1.26
4468597--4468629
2
16.5
2
100
0
66
51
0
0
48
1.00
4470179--4470210
2
16.0
2
100
0
64
50
0
0
50
1.00
4472874--4472904
15
2.1
15
100
0
62
41
0
0
58
0.98
4473012--4473041
14
2.1
14
100
0
60
53
0
0
46
1.00
4474860--4474895
8
4.5
8
85
0
54
55
0
0
44
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147