genome.fa.s445.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  103  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18928458--18928491	10	3.5	10	88	4	52	2	14	0	82	0.79
18929636--18929759	28	4.6	27	76	10	110	21	8	22	47	1.77
18929635--18929759	14	9.2	13	72	11	83	22	8	22	47	1.77
18929832--18929897	13	4.9	13	87	5	96	24	3	21	51	1.62
18929831--18929897	27	2.5	26	90	4	98	23	4	20	50	1.66
18929831--18929910	13	6.0	13	82	5	88	21	5	23	50	1.68
18929832--18929910	40	2.0	40	89	0	122	21	3	24	50	1.65
18931868--18931909	3	14.0	3	90	9	68	30	0	0	69	0.89
18932637--18932682	18	2.6	18	78	0	56	2	17	2	78	0.96
18938376--18938432	13	4.5	13	82	4	71	22	7	28	42	1.80
18938344--18938440	6	15.2	6	72	8	50	21	4	34	40	1.73
18938389--18938440	25	2.0	26	96	3	97	19	7	30	42	1.79
18938443--18938482	21	1.9	21	84	0	53	20	5	30	45	1.72
18939129--18939172	23	2.0	22	81	4	52	47	20	18	13	1.82
18954154--18954290	46	3.0	45	75	14	127	45	16	10	28	1.79
18955359--18955392	10	3.3	10	84	8	50	61	17	11	8	1.54
18956352--18956445	18	5.0	18	73	19	61	75	3	2	19	1.04
18956388--18956444	25	2.3	23	85	8	78	77	0	1	21	0.86
18956373--18956444	19	3.8	18	75	14	56	77	1	1	19	0.91
18956373--18956451	18	4.2	19	75	15	65	77	1	2	18	0.96
18956412--18956451	19	2.2	18	90	4	62	80	0	2	17	0.83
18957301--18957438	3	45.7	3	77	12	113	60	6	2	31	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18958071--18958686	120	5.2	119	75	5	404	46	15	19	18	1.84
18958421--18958634	114	1.9	111	84	2	284	46	14	20	18	1.84
18963599--18963673	16	4.7	17	73	20	56	70	0	8	21	1.12
18964565--18964733	3	57.7	3	74	13	138	60	4	1	32	1.27
18964565--18964676	14	8.5	13	79	13	115	64	2	1	31	1.18
18964565--18964676	17	7.1	16	83	11	126	64	2	1	31	1.18
18964671--18964714	13	3.5	12	84	3	52	50	6	2	40	1.42
18968339--18968426	35	2.5	36	83	9	101	27	42	1	29	1.63
18968371--18968416	18	2.6	18	77	16	51	28	45	2	23	1.65
18970824--18970877	20	2.7	19	72	8	54	33	0	1	64	1.04
18970868--18970904	8	4.6	8	86	0	56	43	0	0	56	0.99
18970840--18970904	23	2.9	21	78	15	58	33	0	1	64	1.03
18970868--18970909	16	2.8	16	89	7	61	45	0	0	54	0.99
18970894--18970945	22	2.5	22	90	6	81	48	1	0	50	1.12
18972572--18972623	26	2.0	26	84	0	68	42	7	1	48	1.43
18973466--18973510	21	2.1	22	84	12	58	31	0	4	64	1.13
18974420--18974478	26	2.3	26	82	5	66	59	10	10	20	1.58
18982477--18982592	32	3.6	32	84	5	126	30	14	16	38	1.89
18982475--18982634	33	4.9	32	79	6	126	30	15	15	39	1.88
18982542--18982630	32	2.8	32	84	1	106	31	14	14	39	1.87
18982687--18982826	36	4.0	35	79	8	131	27	14	17	41	1.87
18982949--18983057	36	3.1	36	90	2	168	26	13	22	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18982957--18983063	34	3.1	34	90	2	160	26	12	20	41	1.87
18983460--18983518	11	5.3	11	75	17	50	13	5	1	79	0.97
18983479--18983518	21	1.9	21	90	10	64	10	7	0	82	0.84
18983466--18983528	33	1.9	33	83	6	83	11	6	4	77	1.10
18983471--18983519	23	2.2	22	85	10	64	12	6	0	81	0.86
18985218--18985272	3	18.3	3	100	0	110	67	0	0	32	0.91
18987501--18987732	56	4.1	58	80	10	239	50	5	7	36	1.54
18987673--18987705	11	2.7	13	90	9	52	54	6	6	33	1.50
18987707--18987755	23	2.1	23	85	7	64	42	12	6	38	1.67
18990304--18990844	144	3.8	144	80	3	608	30	13	14	41	1.84
18990297--18990844	287	1.9	286	84	1	722	30	13	14	41	1.84
18996066--18996113	19	2.6	19	83	3	62	77	4	2	16	1.03
18998247--18998776	36	14.8	36	72	5	214	17	18	14	49	1.80
18998871--18998940	36	1.9	36	88	0	104	15	5	18	60	1.55
18998926--18998993	35	1.9	35	81	3	82	16	8	17	57	1.64
18998931--18999011	35	2.3	35	78	2	81	14	9	16	59	1.61
18999127--18999199	36	2.0	37	81	7	87	21	12	10	54	1.68
18999232--18999335	36	2.9	35	78	2	109	16	17	15	50	1.78
18999602--18999733	71	1.9	71	80	6	160	17	20	12	49	1.79
18999492--19000072	323	1.8	320	80	6	699	18	16	14	51	1.77
18999637--19000730	35	30.7	35	68	11	321	17	15	14	52	1.76
19000228--19000342	34	3.2	37	80	8	119	17	13	11	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19000951--19001073	36	3.4	35	76	10	115	18	15	10	55	1.68
19001298--19001365	36	1.9	35	84	3	91	16	11	13	58	1.62
19001335--19001437	53	1.9	53	88	3	154	19	12	12	55	1.69
19001388--19001518	35	3.7	35	84	2	156	19	12	11	57	1.65
19001388--19001679	70	4.1	70	73	11	225	16	14	14	54	1.71
19001578--19001665	35	2.5	35	84	0	122	17	18	13	51	1.77
19001399--19001766	70	5.2	69	72	10	219	17	15	13	53	1.73
19001852--19001941	36	2.5	36	81	1	119	13	15	16	54	1.71
19001879--19001974	36	2.7	36	75	3	86	16	16	17	48	1.81
19002054--19002439	36	10.9	36	69	11	181	16	16	15	51	1.77
19002306--19002618	35	8.9	35	71	9	181	14	14	18	53	1.74
19002306--19002576	70	3.9	72	74	9	247	14	13	18	54	1.71
19002270--19002620	70	5.0	68	72	9	217	14	15	17	51	1.76
19002517--19002658	71	2.0	72	83	8	184	15	16	17	50	1.78
19002564--19002756	107	1.8	107	81	8	241	16	17	15	51	1.77
19002797--19003390	36	16.6	36	71	7	244	16	16	15	51	1.77
19002517--19003027	271	1.9	266	79	8	579	14	15	17	52	1.75
19003108--19003310	106	1.9	108	82	4	259	17	19	15	47	1.82
19003072--19003387	108	2.9	105	77	8	287	17	18	15	49	1.80
19003324--19003379	18	3.1	18	65	10	51	17	16	10	55	1.69
19003216--19003383	71	2.3	72	83	6	198	16	17	13	51	1.76
19003249--19003454	36	5.8	36	74	9	163	17	14	13	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19003492--19003566	13	5.9	13	73	23	63	82	14	2	0	0.77
19003496--19003564	19	3.7	18	81	14	79	81	15	2	0	0.81
19003499--19003566	24	3.2	20	75	20	66	80	16	2	0	0.82
19003492--19003567	15	5.3	14	73	9	55	82	14	2	0	0.77
19003494--19003567	11	6.8	10	74	18	60	82	14	2	0	0.78
19004014--19004700	344	2.0	343	88	2	1031	32	13	13	41	1.83
19004434--19004782	143	2.4	143	82	3	391	30	12	13	43	1.81
19005570--19005603	17	2.0	17	100	0	68	17	5	23	52	1.66
19013691--19013740	22	2.3	22	85	0	73	30	24	20	26	1.98
19013928--19013973	20	2.2	21	92	3	76	26	4	17	52	1.63
19013955--19014097	17	8.4	17	68	8	60	30	11	11	46	1.75
19014363--19014392	15	2.0	15	93	0	51	33	10	13	43	1.77
19022205--19022269	27	2.2	30	84	13	82	49	7	1	41	1.41
19026213--19026406	101	1.9	101	98	0	379	38	15	20	25	1.92
19026342--19026647	154	2.0	154	87	0	441	32	14	25	28	1.94
19029972--19029996	2	12.5	2	100	0	50	52	0	0	48	1.00
19030034--19030112	40	2.0	40	92	0	131	37	17	17	26	1.92
19033641--19033675	13	2.7	13	90	0	52	82	0	8	8	0.83
19034534--19034593	12	4.7	13	80	19	65	35	0	0	65	0.93
19034539--19034594	22	2.5	22	77	5	60	35	0	0	64	0.94
19034552--19034590	16	2.4	16	82	0	51	35	0	0	64	0.94
19036060--19036090	12	2.6	12	94	0	53	19	6	3	70	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19036600--19036657	25	2.4	24	82	8	64	24	3	1	70	1.12
19039240--19039340	33	2.9	36	73	8	93	42	12	16	27	1.85
19043926--19043977	16	3.2	16	77	2	59	28	5	7	57	1.50
19046895--19046923	14	2.1	14	100	0	58	34	27	6	31	1.83
19055494--19055547	20	2.7	20	74	5	56	40	20	22	16	1.91
19061333--19061366	15	2.2	16	89	5	52	70	5	2	20	1.21
19064959--19065000	18	2.3	19	84	12	52	45	11	2	40	1.54
19065413--19065524	55	2.0	55	98	0	215	29	13	27	29	1.94
19065495--19065616	61	2.0	61	95	0	217	30	14	20	34	1.93
19066076--19066101	10	2.6	10	100	0	52	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147