genome.fa.s445.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  21  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4478936--4478965	2	15.0	2	100	0	60	50	0	0	50	1.00
4481098--4481139	16	2.4	18	80	11	52	30	0	2	66	1.04
4481504--4481557	26	2.2	24	83	12	65	55	0	12	31	1.38
4482064--4482097	5	6.6	5	89	3	50	0	26	0	73	0.83
4482063--4482105	22	1.9	23	85	4	61	0	25	2	72	0.97
4488203--4488274	15	4.9	15	68	13	51	51	0	2	45	1.15
4488285--4488309	12	2.1	12	100	0	50	44	0	0	56	0.99
4488750--4488789	21	1.9	21	90	10	64	60	0	5	35	1.19
4492813--4492859	20	2.3	20	92	0	76	59	6	4	29	1.41
4493099--4493174	39	1.9	39	97	0	143	31	15	19	32	1.94
4502630--4502704	26	2.9	26	80	11	82	22	30	20	26	1.98
4502835--4502920	9	9.6	9	85	8	113	26	1	2	69	1.07
4502835--4502920	6	14.3	6	86	8	113	26	1	2	69	1.07
4514965--4515585	119	5.3	119	77	5	499	17	19	17	45	1.86
4514967--4515553	234	2.5	236	78	4	603	17	19	17	46	1.84
4515678--4515756	26	3.0	26	72	7	79	17	26	21	34	1.96
4515743--4515793	26	2.0	26	84	0	66	25	23	23	27	2.00
4515925--4515950	3	8.7	3	100	0	52	30	0	0	69	0.89
4520166--4520240	36	2.1	37	87	2	107	22	33	8	36	1.84
4520725--4520853	64	2.0	64	93	0	222	29	22	14	33	1.94
4525053--4525086	2	17.0	2	100	0	68	50	0	0	50	1.00
4527872--4527901	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4530055--4530117	30	2.1	31	84	3	83	47	4	12	34	1.63
4530601--4530781	33	5.7	33	66	15	119	28	13	4	53	1.61
4534941--4534980	16	2.3	19	83	16	59	42	0	5	52	1.23
4535966--4536003	18	2.1	18	90	9	60	44	0	7	47	1.32
4536189--4536245	18	3.3	17	72	18	55	59	1	0	38	1.08
4536177--4536254	40	2.0	40	82	9	99	58	2	0	38	1.12
4536193--4536247	17	3.1	18	71	12	51	58	1	0	40	1.09
4536201--4536263	21	3.1	21	77	18	71	57	1	0	41	1.08
4538825--4538852	2	14.0	2	100	0	56	50	0	0	50	1.00
4541547--4541664	57	2.1	57	95	0	209	38	19	13	27	1.89
4543312--4543361	26	2.0	25	84	4	64	38	2	4	56	1.30
4549832--4549864	17	2.0	17	88	5	50	39	0	0	60	0.97
4556534--4556576	14	2.8	16	80	20	56	74	0	4	20	1.00
4557433--4557499	3	22.3	3	90	0	107	64	0	4	31	1.14
4558971--4559094	57	2.1	58	84	12	166	11	16	12	58	1.62
4566100--4566184	41	2.1	41	86	0	116	64	4	11	18	1.43
4567058--4567139	5	16.0	5	74	18	55	75	1	2	20	0.98
4567071--4567140	14	4.6	14	77	20	52	77	1	2	18	0.97
4567043--4567139	23	4.1	22	76	12	86	74	1	3	21	1.02
4567059--4567140	19	4.1	18	73	21	65	76	1	2	19	0.96
4567060--4567141	18	4.6	18	76	4	69	75	1	2	20	0.98
4568010--4568053	19	2.4	19	84	3	54	52	4	9	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4581358--4581401	22	2.0	22	86	4	63	50	22	11	15	1.76
4582357--4582413	30	1.9	30	88	0	87	17	22	22	36	1.94
4585056--4585083	2	14.0	2	100	0	56	50	0	0	50	1.00
4593622--4595393	237	7.4	237	80	7	1589	35	11	12	40	1.79
4593622--4595393	475	3.7	470	80	7	1664	35	11	12	40	1.79
4595224--4595332	51	2.1	51	80	8	123	33	8	11	46	1.69
4596198--4596276	28	2.8	28	92	0	131	22	3	25	48	1.68
4599580--4600167	179	3.3	176	81	5	621	35	13	14	36	1.86
4599971--4600339	194	1.9	195	86	1	526	37	13	14	34	1.86
4600226--4600499	125	2.2	127	79	9	285	35	16	13	35	1.87
4600514--4600761	125	2.0	125	83	6	315	33	16	14	35	1.89
4600166--4601066	304	3.0	303	86	3	1188	35	15	13	34	1.87
4602490--4602528	11	3.6	11	86	3	53	43	0	0	56	0.99
4602922--4602969	25	2.0	24	83	4	60	12	39	4	43	1.62
4604495--4604550	12	4.5	12	75	16	51	33	0	0	66	0.92
4609368--4609406	20	2.0	20	85	10	53	33	15	7	43	1.75
4609451--4609933	21	21.1	21	70	18	218	38	14	9	37	1.78
4609451--4609959	46	11.1	46	83	5	627	38	14	9	37	1.78
4609451--4609959	230	2.2	230	86	3	695	38	14	9	37	1.78
4610266--4610310	23	2.0	23	82	8	56	28	13	6	51	1.66
4611149--4611191	15	2.9	15	80	19	54	6	18	0	74	1.04
4611179--4611238	11	5.6	10	77	13	57	1	15	3	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4611202--4611315	45	2.5	44	78	12	115	6	18	1	73	1.12
4611249--4611305	15	4.2	13	76	23	55	3	15	0	80	0.84
4611149--4611286	16	8.2	17	68	20	53	5	17	2	75	1.08
4611263--4611317	27	2.0	27	83	13	69	9	20	0	70	1.13
4611179--4611322	70	2.0	71	81	9	168	6	18	2	73	1.14
4614947--4615002	12	4.5	12	72	16	51	66	0	0	33	0.92
4614959--4615014	10	5.4	10	77	12	51	66	0	0	33	0.92
4616469--4616516	25	2.0	24	83	4	60	43	4	39	12	1.62
4616711--4616759	21	2.3	21	79	6	55	61	4	0	34	1.15
4616914--4616952	11	3.6	11	82	6	53	53	0	0	46	1.00
4618728--4618958	64	3.7	63	71	10	186	33	15	16	33	1.91
4618664--4618958	125	2.3	126	81	9	336	35	14	16	33	1.89
4618386--4619295	305	3.0	302	86	2	1189	35	14	14	35	1.87
4619101--4619668	194	3.0	188	77	12	542	34	14	14	36	1.87
4619294--4619850	179	3.1	178	81	4	556	34	14	14	36	1.87
4623101--4623176	37	2.1	37	85	5	100	40	19	11	27	1.87
4623182--4623260	28	2.8	29	86	1	106	51	24	1	22	1.55
4624055--4625791	237	7.3	237	81	5	1699	40	12	11	35	1.79
4624055--4625801	475	3.7	474	82	4	1846	40	12	11	35	1.79
4632679--4632726	24	2.0	23	88	4	69	75	0	16	8	1.04
4633084--4633177	16	6.0	16	73	18	65	78	1	15	4	0.96
4633082--4633223	21	5.7	24	70	21	80	76	2	15	5	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4633101--4633149	21	2.3	21	93	6	82	83	2	8	6	0.87
4633082--4633178	36	2.7	34	78	12	97	78	1	15	5	0.98
4633101--4633150	11	4.6	11	90	9	77	84	2	8	6	0.86
4633085--4633178	10	9.4	9	76	13	62	79	1	14	4	0.93
4633084--4633229	26	5.6	26	67	25	69	76	2	15	5	1.06
4634460--4634485	13	2.0	13	100	0	52	30	0	23	46	1.53
4634472--4634517	22	2.1	22	83	0	56	34	6	21	36	1.80
4634531--4634586	21	2.8	20	88	2	76	37	12	16	33	1.86
4634472--4634642	79	2.2	80	90	3	265	36	11	18	34	1.86
4634979--4635309	42	8.0	42	84	5	358	23	11	19	45	1.84
4634980--4635288	84	3.7	83	85	6	412	22	11	19	45	1.82
4635497--4635542	7	6.1	7	87	9	56	84	2	0	13	0.71
4635499--4635545	8	6.0	8	85	5	69	85	2	0	12	0.70
4635707--4635750	19	2.2	20	92	4	72	68	9	13	9	1.40
4640340--4640417	27	3.0	27	78	14	74	74	3	1	20	1.05
4640382--4640417	6	5.8	6	87	6	54	80	0	0	19	0.71
4641183--4641303	3	42.3	3	69	12	67	61	4	4	29	1.36
4641515--4641654	55	2.5	55	83	0	181	40	12	23	23	1.88
4647818--4647870	13	4.2	12	76	13	54	71	0	7	20	1.10
4647810--4647899	32	2.9	29	79	15	92	73	1	6	18	1.11
4647830--4647905	19	4.1	18	73	11	57	76	1	5	17	1.04
4647830--4647905	24	3.1	24	73	14	66	76	1	5	17	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4648680--4648733	3	18.3	3	76	3	56	62	1	3	31	1.23
4649448--4649552	52	2.0	52	88	3	158	41	7	23	26	1.81
4653133--4653163	2	16.0	2	93	6	55	51	0	0	48	1.00
4655489--4655544	26	2.2	26	78	15	62	50	1	3	44	1.29
4655500--4655558	26	2.4	24	86	10	91	50	0	1	47	1.11
4655644--4655748	23	4.4	22	70	21	68	40	1	0	57	1.16
4655649--4655749	27	3.5	27	71	19	87	41	1	0	55	1.18
4655676--4655748	18	4.2	18	77	12	89	43	1	1	53	1.17
4656111--4656259	72	2.1	72	79	10	164	42	10	6	40	1.66
4657709--4657742	2	17.5	2	87	6	52	50	2	0	47	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147