genome.fa.s445.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  48  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9613336--9613550	112	1.9	112	82	3	272	29	9	13	47	1.74
9613692--9613734	18	2.4	18	88	0	59	41	13	9	34	1.77
9617546--9617590	18	2.6	18	82	3	56	46	0	0	53	1.00
9622617--9622669	15	3.6	15	78	12	56	47	1	1	49	1.23
9623418--9623456	2	19.5	2	100	0	78	0	48	0	51	1.00
9624224--9624260	5	7.4	5	93	0	65	40	2	0	56	1.13
9627830--9627905	23	3.5	22	72	16	68	32	1	2	63	1.17
9627841--9627919	23	3.8	20	75	21	65	32	0	3	63	1.12
9627999--9628027	3	10.0	3	92	7	51	34	0	0	65	0.93
9629018--9629415	58	6.7	58	84	6	494	44	7	13	34	1.70
9629016--9629415	179	2.2	178	91	3	662	44	7	13	35	1.71
9629019--9629415	119	3.3	118	86	4	534	44	7	13	35	1.70
9632598--9632639	18	2.3	18	95	0	75	40	4	21	33	1.74
9632889--9632931	12	3.7	11	82	11	59	86	11	2	0	0.67
9633164--9633238	23	3.4	22	72	17	66	33	1	2	62	1.17
9633174--9633252	23	3.8	20	75	21	65	32	0	3	63	1.12
9634221--9634277	27	2.1	27	81	12	64	15	7	1	75	1.10
9634331--9634787	58	7.8	57	84	7	576	45	7	13	34	1.71
9634333--9634787	118	3.8	117	85	6	616	45	6	13	34	1.70
9635329--9635437	30	3.6	30	82	7	123	38	7	17	36	1.78
9637413--9637452	18	2.3	18	91	4	64	32	7	0	60	1.25
9637852--9637876	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9639807--9640019	112	1.9	111	82	4	268	30	9	13	46	1.75
9640161--9640203	18	2.4	18	92	0	68	44	13	9	32	1.76
9643866--9643896	13	2.4	13	94	0	53	74	0	6	19	1.03
9644001--9644045	18	2.6	18	82	3	56	46	0	0	53	1.00
9649610--9649644	15	2.3	15	90	0	52	54	2	0	42	1.15
9652285--9652343	31	1.9	31	92	0	100	40	8	15	35	1.77
9652292--9652373	30	2.7	31	84	1	94	40	7	13	39	1.72
9652288--9652389	30	3.4	29	77	8	87	39	6	14	39	1.73
9654116--9654497	42	9.1	42	82	9	446	36	22	16	24	1.94
9654116--9654497	84	4.6	84	88	4	526	36	22	16	24	1.94
9654116--9654497	125	3.0	124	89	5	549	36	22	16	24	1.94
9655725--9655785	27	2.2	29	80	19	76	8	11	0	80	0.91
9655736--9655773	10	3.4	11	85	14	51	7	10	0	81	0.87
9661695--9662054	59	6.0	57	82	9	407	33	12	8	46	1.72
9661695--9662054	118	3.0	116	88	7	508	33	12	8	46	1.72
9662075--9662137	10	6.2	10	83	9	83	84	1	3	11	0.81
9662069--9662137	11	6.5	11	81	8	65	82	1	2	13	0.85
9662069--9662145	6	13.3	6	71	16	56	81	1	3	12	0.88
9662078--9662145	17	4.3	17	72	12	56	82	1	4	11	0.88
9662072--9662150	9	8.4	9	77	13	79	81	1	5	12	0.92
9662168--9662206	12	3.2	12	85	3	51	79	2	5	12	1.00
9663001--9663047	18	2.7	17	76	3	58	72	0	8	19	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9663789--9663825	18	2.0	19	94	5	67	32	8	0	59	1.27
9668460--9668638	99	1.8	99	82	4	236	41	11	8	37	1.72
9669110--9669379	59	4.7	59	85	7	342	34	13	8	43	1.75
9669110--9669378	58	4.7	58	85	7	320	34	13	8	43	1.75
9669110--9669378	115	2.3	116	83	6	359	34	13	8	43	1.75
9669406--9669489	5	15.4	5	77	20	80	76	0	7	16	1.00
9669406--9669489	17	5.1	15	78	18	80	76	0	7	16	1.00
9669396--9669478	38	2.3	36	85	10	107	74	0	8	16	1.05
9669514--9669548	3	12.0	3	93	6	63	68	0	0	31	0.90
9670062--9670112	12	4.4	12	80	4	61	52	13	1	31	1.51
9670484--9670532	14	3.6	14	74	25	52	59	6	6	28	1.46
9670487--9670543	25	2.3	25	88	8	82	61	5	3	29	1.35
9671260--9671294	14	2.5	14	86	13	54	71	5	0	22	1.07
9671414--9671444	13	2.4	13	94	0	53	74	0	6	19	1.03
9671549--9671593	18	2.6	18	82	3	56	46	0	0	53	1.00
9675347--9675374	5	5.6	5	100	0	56	17	0	17	64	1.30
9675372--9675396	1	25.0	1	100	0	50	0	0	0	100	0.00
9675664--9675710	24	2.0	24	82	0	58	53	6	6	34	1.52
9676834--9676951	58	2.0	58	88	3	175	45	6	7	39	1.59
9677517--9677627	55	2.0	55	89	0	168	34	18	12	34	1.89
9678408--9678459	22	2.4	23	81	12	65	46	7	1	44	1.43
9679897--9679924	14	2.0	14	100	0	56	28	21	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9681844--9681870	4	6.8	4	100	0	54	22	0	0	77	0.76
9682311--9682356	18	2.6	17	80	10	56	19	0	2	78	0.86
9685569--9685602	6	5.5	6	93	6	59	14	2	0	82	0.79
9685570--9685607	13	3.1	13	88	11	62	13	5	0	81	0.85
9687075--9687124	22	2.2	23	82	10	59	76	10	2	12	1.11
9687114--9687159	4	11.8	4	81	4	58	71	0	6	21	1.08
9687410--9687589	43	4.2	43	86	2	254	48	16	8	26	1.75
9688177--9688250	14	5.6	14	75	13	68	40	16	5	37	1.71
9689301--9689378	7	11.6	7	82	8	99	10	17	0	71	1.12
9691674--9691785	40	2.6	42	76	18	115	31	6	2	59	1.36
9691744--9691805	20	3.0	20	83	6	81	30	4	3	61	1.33
9691749--9691823	20	3.7	19	74	13	62	26	5	5	62	1.38
9692330--9692443	6	19.8	6	75	14	55	25	1	2	70	1.10
9692323--9692447	17	7.4	17	70	17	66	24	1	2	72	1.06
9692376--9692450	23	3.3	23	75	15	77	18	1	1	78	0.89
9692379--9692450	5	14.0	5	74	20	60	18	1	1	79	0.88
9692377--9692445	35	2.0	35	86	11	97	18	1	1	78	0.91
9692458--9692732	119	2.3	117	83	10	319	43	7	13	36	1.71
9692458--9692732	61	4.6	60	81	9	298	43	7	13	36	1.71
9692681--9692749	32	2.2	32	84	2	86	39	8	10	42	1.70
9692691--9692766	32	2.3	33	88	4	109	46	5	14	34	1.67
9692569--9692881	148	2.1	149	87	7	445	43	6	14	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9692722--9692890	58	2.9	57	77	14	193	43	7	14	35	1.72
9696813--9696868	17	3.3	17	72	16	53	76	0	16	7	0.99
9696843--9696899	28	2.0	28	90	6	89	78	0	15	5	0.91
9696820--9696876	16	3.3	17	69	13	53	77	0	17	5	0.95
9698723--9698947	41	5.5	40	85	9	253	24	15	20	39	1.91
9698723--9698954	82	2.8	80	86	7	315	24	15	21	39	1.91
9699027--9699092	11	5.5	12	75	17	57	83	16	0	0	0.65
9699027--9699090	18	3.6	18	81	10	78	82	17	0	0	0.66
9699026--9699092	30	2.2	31	89	2	109	83	16	0	0	0.64
9699109--9699248	41	3.3	42	91	3	228	27	17	21	33	1.96
9699521--9699621	40	2.3	44	80	13	120	30	5	1	61	1.31
9699593--9699634	20	2.0	21	95	4	77	30	4	0	64	1.14
9700180--9700224	6	7.7	6	85	5	65	17	2	0	80	0.82
9700183--9700254	5	14.0	5	76	17	51	18	1	2	77	0.96
9700182--9700253	23	3.2	23	77	12	78	16	1	2	79	0.93
9700175--9700250	29	2.6	30	81	10	95	19	1	2	76	0.98
9700262--9700961	60	11.8	59	79	7	729	41	7	13	38	1.71
9700268--9700961	118	5.9	119	86	5	897	41	6	13	37	1.71
9703471--9703806	182	1.8	182	82	9	436	36	10	8	45	1.68
9704750--9704841	16	5.6	16	69	14	62	72	7	2	17	1.17
9704795--9704840	4	11.8	4	81	4	58	71	2	4	21	1.14
9706058--9706215	48	3.3	48	78	5	187	46	12	12	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9711599--9711710	15	7.9	15	66	23	55	55	0	0	42	1.12
9711610--9711691	12	7.2	12	72	16	68	57	0	1	41	1.06
9711599--9711699	28	3.6	28	73	16	102	55	0	0	42	1.13
9711592--9711705	56	2.0	56	93	3	194	55	0	1	42	1.16
9711653--9711691	11	3.5	11	86	13	62	53	0	0	46	1.00
9712379--9712417	21	1.9	21	89	5	62	20	30	28	20	1.98
9712475--9712514	9	4.7	9	84	15	50	25	0	7	67	1.16
9712478--9712574	37	2.5	40	76	20	109	30	0	6	62	1.19
9712491--9712608	8	16.6	7	69	23	52	33	0	5	61	1.18
9713084--9713120	19	1.9	19	94	0	65	32	13	13	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147