genome.fa.s445.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  127  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22907979--22908158	87	2.1	87	81	1	209	27	13	16	42	1.85
22909173--22909206	14	2.4	14	90	0	50	17	2	8	70	1.25
22909848--22909954	56	1.9	57	86	5	155	50	7	7	34	1.59
22912855--22912912	19	3.1	18	78	7	62	25	0	27	46	1.53
22912884--22912998	7	16.7	7	73	13	78	20	0	33	46	1.51
22912884--22913003	19	5.9	19	73	17	98	20	0	33	45	1.52
22912864--22912936	14	5.5	14	69	22	50	24	0	31	43	1.54
22912916--22912985	24	2.8	24	82	4	86	18	0	35	45	1.50
22913019--22913085	15	4.5	15	77	7	64	23	1	26	47	1.60
22913036--22913083	8	6.2	8	80	4	55	22	0	25	52	1.48
22913021--22913077	22	2.5	23	88	5	89	22	1	24	50	1.58
22913021--22913084	22	2.8	23	79	13	78	23	1	25	50	1.58
22913856--22913981	55	2.3	55	95	0	234	45	15	4	34	1.67
22914296--22914325	10	3.1	10	95	4	53	36	0	0	63	0.95
22915786--22915812	3	9.0	3	100	0	54	33	0	0	66	0.92
22926796--22926837	18	2.3	19	87	4	59	45	2	4	47	1.36
22927535--22927564	14	2.1	15	93	6	53	50	0	0	50	1.00
22932701--22932728	2	14.0	2	100	0	56	50	0	0	50	1.00
22934263--22934308	2	24.0	2	82	8	60	47	0	0	52	1.00
22934294--22934357	23	3.0	23	82	11	66	51	4	0	43	1.22
22934310--22934365	23	2.5	23	85	2	78	51	5	0	42	1.24
22935808--22935879	18	4.2	18	73	5	51	48	1	1	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22944549--22944575	9	3.0	9	100	0	54	44	22	22	11	1.84
22947478--22947519	21	2.0	21	90	0	66	42	14	14	28	1.84
22953800--22953985	18	10.5	18	71	14	104	55	2	1	40	1.21
22953807--22953969	23	7.0	23	68	21	81	52	3	1	42	1.24
22953825--22953873	20	2.5	20	75	18	59	51	4	0	44	1.20
22953846--22953985	41	3.3	41	73	13	131	55	2	1	40	1.23
22954044--22954086	16	2.7	16	82	7	52	51	0	0	48	1.00
22954231--22954257	14	1.9	14	100	0	54	44	0	0	55	0.99
22954380--22954418	16	2.4	16	95	0	69	53	5	5	35	1.45
22957571--22957604	2	17.5	2	87	6	52	47	2	0	50	1.16
22960574--22960611	9	3.8	10	86	10	51	0	10	7	81	0.87
22960574--22960611	19	2.0	20	89	5	60	0	10	7	81	0.87
22961054--22961095	21	2.0	22	85	4	59	19	4	11	64	1.44
22963093--22963123	14	2.1	14	94	5	53	0	9	0	90	0.46
22963097--22963121	11	2.3	11	100	0	50	0	8	0	92	0.40
22966362--22966407	18	2.5	17	86	10	56	21	4	2	71	1.14
22966467--22966511	8	5.4	8	80	19	56	35	2	2	60	1.22
22966549--22966587	12	3.1	12	79	13	51	69	0	5	25	1.09
22970223--22970282	21	2.9	20	85	7	75	81	0	10	8	0.87
22970537--22970621	24	3.8	24	76	14	58	72	1	17	8	1.15
22970575--22970623	8	7.0	7	84	11	57	83	0	12	4	0.77
22970573--22970623	13	3.8	13	80	14	50	84	0	11	3	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22970573--22970623	21	2.5	21	90	3	77	84	0	11	3	0.75
22971599--22971838	45	5.4	44	80	9	256	35	8	14	42	1.76
22971607--22971678	22	3.2	22	71	13	65	31	9	16	41	1.81
22971624--22971790	23	7.3	23	64	14	87	35	7	14	43	1.73
22971619--22971861	90	2.7	89	83	8	298	35	9	13	41	1.77
22971982--22972038	25	2.3	25	81	0	69	28	7	14	50	1.68
22972205--22972324	34	3.5	34	71	6	100	39	12	14	34	1.83
22973792--22973834	19	2.2	20	91	8	70	37	4	4	53	1.43
22973797--22973841	21	2.3	19	84	7	54	37	4	6	51	1.49
22974011--22974083	37	1.9	37	83	2	92	43	12	9	34	1.75
22975961--22976005	23	2.0	23	86	4	65	33	0	0	66	0.92
22975990--22976023	18	1.9	17	88	5	50	47	0	0	52	1.00
22976086--22976142	16	3.5	16	75	11	53	68	3	0	28	1.06
22982266--22982328	25	2.5	25	92	0	99	47	31	6	14	1.69
22982266--22982330	13	5.2	13	75	7	71	47	32	6	13	1.68
22982273--22982350	12	6.3	12	76	5	57	44	32	6	16	1.73
22982269--22982342	25	3.0	25	84	4	87	47	31	5	16	1.69
22982980--22983340	187	1.9	186	86	3	512	39	10	15	35	1.81
22983243--22983434	61	3.1	60	69	15	158	37	9	14	38	1.80
22983224--22983453	124	1.9	124	89	3	365	37	10	13	37	1.81
22983225--22983424	63	3.2	60	70	13	154	36	12	14	38	1.83
22983038--22983639	311	1.9	310	83	4	784	38	11	14	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22983349--22984012	186	3.6	183	83	4	778	39	11	13	34	1.82
22994097--22994145	18	2.9	17	81	6	55	63	0	0	36	0.95
22994101--22994139	16	2.4	16	82	0	51	64	0	0	35	0.94
22994502--22994545	22	2.0	22	90	0	70	25	20	29	25	1.99
22995173--22995207	15	2.2	16	90	5	54	5	0	5	88	0.63
22998712--22999167	235	1.9	235	89	0	705	32	19	19	28	1.96
23000791--23000820	8	3.8	8	95	0	51	83	3	0	13	0.77
23005034--23005117	10	8.3	10	77	12	82	82	0	15	2	0.78
23005034--23005117	19	4.2	19	79	11	96	82	0	15	2	0.78
23006312--23006566	46	5.6	46	82	3	257	38	9	14	38	1.78
23006320--23006562	25	10.7	21	72	14	101	38	8	13	38	1.76
23006536--23006593	28	2.0	29	93	6	100	27	8	20	43	1.81
23006873--23006933	31	2.0	31	84	12	81	42	9	13	34	1.77
23018599--23018712	57	2.0	57	81	3	131	53	12	14	20	1.72
23021883--23021915	2	16.5	2	100	0	66	48	0	0	51	1.00
23022472--23022515	22	2.0	22	86	0	61	27	22	29	20	1.99
23025178--23025232	18	2.9	18	75	5	56	56	1	0	41	1.10
23027958--23028002	3	15.0	3	100	0	90	66	0	0	33	0.92
23028148--23028239	21	4.4	21	82	6	98	33	1	9	55	1.40
23028538--23028690	22	7.0	22	79	2	146	43	9	2	43	1.51
23028590--23028666	11	7.0	11	74	0	55	41	7	1	49	1.40
23028548--23028731	66	2.8	66	75	8	160	42	10	3	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23028732--23028904	22	7.9	21	66	14	73	39	10	2	46	1.53
23028882--23028967	29	3.0	29	91	0	136	43	10	5	40	1.63
23028944--23029044	21	4.7	21	74	16	66	42	8	2	45	1.50
23028938--23029044	43	2.5	43	74	6	101	42	9	2	45	1.51
23028944--23029255	65	4.8	64	74	11	197	39	8	5	46	1.56
23028938--23029252	22	14.4	22	71	9	169	39	8	5	47	1.56
23029545--23029730	22	8.5	22	80	0	183	38	6	6	47	1.56
23029808--23029870	22	2.9	21	76	6	54	33	7	11	47	1.68
23029867--23029916	22	2.4	21	84	12	68	42	12	4	42	1.60
23029876--23029918	22	2.0	22	95	0	77	44	11	4	39	1.62
23029977--23030035	22	2.8	21	85	10	84	38	8	1	50	1.43
23030190--23030270	22	3.7	22	76	0	72	41	11	3	43	1.58
23030406--23030464	22	2.7	22	86	0	82	37	13	5	44	1.66
23031868--23031954	22	4.0	22	77	7	79	34	10	5	49	1.61
23031923--23032012	22	4.2	21	72	12	76	38	10	4	46	1.57
23031923--23032000	21	3.7	21	75	11	70	38	10	5	46	1.60
23032523--23032557	14	2.6	14	86	4	54	71	5	0	22	1.07
23032537--23032579	22	2.0	22	85	0	59	69	6	0	23	1.12
23035110--23035147	20	2.0	20	84	5	51	44	2	5	47	1.39
23035604--23035636	17	1.9	17	93	0	57	51	6	9	33	1.58
23037240--23037312	30	2.4	30	86	6	94	43	2	17	35	1.64
23042522--23042589	6	10.7	6	73	10	55	47	32	1	19	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23042510--23042583	13	5.8	13	73	10	64	45	32	2	18	1.64
23042431--23042672	104	2.4	104	94	3	420	46	27	1	23	1.62
23042522--23042589	19	3.6	18	76	9	64	47	32	1	19	1.58
23042634--23042669	17	2.1	17	89	0	54	50	27	0	22	1.50
23042606--23042713	19	5.6	19	73	17	64	45	34	1	18	1.60
23047396--23047489	32	2.9	33	80	4	93	25	12	20	41	1.87
23050596--23050641	23	2.0	23	95	0	83	50	8	8	32	1.64
23057914--23057950	19	2.1	17	90	10	56	40	0	2	56	1.13
23067934--23068013	42	1.9	42	89	5	126	41	15	12	31	1.84
23075293--23075363	29	2.4	31	80	7	83	54	1	2	40	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147