genome.fa.s445.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  140  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25741400--25741425	12	2.2	12	100	0	52	38	0	0	61	0.96
25742329--25742370	2	21.0	2	100	0	84	50	0	0	50	1.00
25742837--25742928	47	2.0	47	93	0	157	27	5	17	50	1.68
25750085--25750133	24	2.0	24	84	7	64	57	0	2	40	1.10
25756305--25756338	2	17.0	2	100	0	68	50	0	0	50	1.00
25765975--25766014	21	1.9	20	85	10	53	62	2	0	35	1.09
25767226--25767431	101	2.0	101	96	0	376	27	8	13	50	1.70
25773031--25773062	2	16.0	2	100	0	64	50	0	0	50	1.00
25776826--25776872	15	3.1	15	75	19	53	38	0	0	61	0.96
25776842--25776916	23	3.4	23	87	8	95	40	0	0	60	0.97
25776888--25776925	18	2.1	19	90	5	60	34	0	0	65	0.93
25777613--25777644	15	2.1	16	88	11	50	53	0	0	46	1.00
25779280--25779308	14	2.1	14	100	0	58	51	13	0	34	1.42
25779876--25779915	12	3.3	12	92	0	62	52	2	0	45	1.14
25780430--25780472	22	1.9	22	90	4	68	55	4	4	34	1.41
25780569--25780737	23	7.5	23	72	13	102	54	2	1	42	1.21
25780566--25780647	30	2.7	30	76	14	80	58	2	0	39	1.11
25780566--25780650	18	4.8	18	77	18	88	57	2	0	40	1.11
25780823--25780863	16	2.7	15	85	7	55	48	2	0	48	1.14
25780833--25780896	26	2.5	26	87	9	96	51	1	0	46	1.10
25780826--25780896	9	8.2	9	71	20	53	50	1	0	47	1.09
25781019--25781058	14	2.8	14	84	3	53	45	12	0	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25782165--25782191	6	4.5	6	100	0	54	62	0	0	37	0.95
25782839--25782892	27	2.0	28	82	10	67	55	1	0	42	1.10
25789710--25790075	183	2.0	181	92	1	606	32	22	13	31	1.92
25795415--25795466	22	2.4	21	77	20	54	48	0	0	51	1.00
25795405--25795454	22	2.1	24	82	17	61	50	0	0	50	1.00
25799558--25799583	12	2.2	12	100	0	52	42	7	7	42	1.62
25813655--25813737	27	3.1	27	84	5	116	48	0	3	48	1.19
25813732--25813804	17	3.9	19	68	16	55	54	0	1	43	1.08
25813723--25813809	18	5.0	18	75	16	69	54	1	1	43	1.15
25813841--25813939	44	2.2	44	77	7	103	41	1	2	55	1.18
25814103--25814130	14	2.0	14	100	0	56	42	0	0	57	0.99
25828605--25828635	16	1.9	16	93	0	53	32	12	0	54	1.38
25828857--25828914	27	2.2	26	84	9	73	25	10	8	55	1.62
25830320--25830371	27	1.9	27	84	0	68	28	15	36	19	1.92
25834410--25834469	11	5.8	10	77	18	52	21	1	3	73	1.07
25834410--25834478	5	13.4	5	75	17	61	23	1	2	72	1.06
25834425--25834470	23	1.9	24	86	8	67	23	0	2	73	0.94
25834420--25834489	11	5.9	12	77	14	65	25	1	1	71	1.03
25834450--25834481	16	2.0	16	93	0	55	28	0	0	71	0.86
25834866--25834890	13	1.9	13	100	0	50	40	0	0	60	0.97
25838254--25838283	15	1.9	16	93	6	53	86	10	3	0	0.67
25839340--25839466	22	5.8	22	70	11	73	33	4	13	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25839338--25839460	44	2.8	44	80	7	142	33	4	13	47	1.64
25839549--25839669	23	5.4	23	65	8	61	33	4	16	46	1.66
25840027--25840065	18	2.1	19	90	4	62	35	5	15	43	1.69
25840100--25840158	31	1.9	30	86	3	82	30	13	13	42	1.83
25840262--25840423	67	2.4	66	76	6	173	20	24	13	40	1.89
25840472--25840619	66	2.2	66	85	0	188	20	18	10	51	1.74
25841154--25841229	3	24.7	3	94	5	134	32	1	1	64	1.10
25845798--25845946	76	2.0	76	95	0	271	29	16	16	37	1.91
25864661--25864700	2	20.0	2	94	0	71	50	2	0	47	1.14
25870622--25870673	23	2.3	23	80	6	61	23	1	13	61	1.42
25878399--25878429	14	2.2	14	94	0	53	58	0	6	35	1.24
25878329--25878593	133	2.0	132	87	5	383	50	3	9	36	1.52
25879359--25879396	19	2.0	19	100	0	76	21	21	21	36	1.95
25879782--25879830	15	3.1	15	79	5	53	34	12	8	44	1.71
25881640--25881791	59	2.6	58	87	3	207	50	5	11	32	1.61
25881640--25881791	58	2.6	58	87	5	207	50	5	11	32	1.61
25881914--25881966	24	2.2	24	80	6	63	43	5	5	45	1.51
25883601--25883669	31	2.2	31	84	5	86	50	1	7	40	1.39
25884508--25884532	7	3.6	7	100	0	50	32	0	0	68	0.90
25892256--25892340	29	2.9	30	75	16	79	55	1	5	37	1.32
25892749--25892817	24	3.0	23	79	12	79	63	0	2	33	1.09
25893114--25893180	31	2.1	31	83	8	82	26	13	11	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25894071--25894127	15	3.4	18	77	18	70	54	1	0	43	1.10
25894135--25894215	34	2.4	33	82	12	85	44	0	2	53	1.14
25897680--25897757	39	2.0	39	87	2	113	34	7	1	56	1.36
25897887--25897916	15	1.9	16	93	6	53	46	3	0	50	1.18
25899279--25899305	14	1.9	14	100	0	54	74	0	0	25	0.83
25906055--25906098	22	2.1	22	84	12	58	36	0	0	63	0.95
25906098--25906144	24	1.9	24	82	4	58	25	8	2	63	1.34
25906240--25906271	3	11.0	3	93	6	57	68	0	0	31	0.90
25907900--25907933	18	1.9	18	88	5	52	26	0	8	64	1.22
25911180--25911225	23	1.9	25	86	8	69	56	17	10	15	1.67
25918254--25918430	92	1.9	94	83	5	234	41	19	3	35	1.70
25921110--25921246	70	1.9	70	82	1	166	37	10	7	43	1.68
25922632--25922736	52	2.0	52	94	0	183	37	16	6	40	1.75
25923513--25923578	33	2.0	33	96	0	123	46	10	0	42	1.38
25924436--25924520	32	2.6	32	85	5	100	43	27	2	27	1.67
25924269--25924752	156	3.1	155	87	1	680	45	23	1	29	1.61
25924613--25924675	32	2.0	32	87	0	90	46	26	0	26	1.54
25924884--25924931	11	4.3	11	76	5	51	66	4	4	25	1.27
25924873--25924933	22	2.7	22	85	7	70	68	3	3	24	1.19
25927156--25927197	3	13.7	3	95	5	75	66	0	0	33	0.92
25938180--25938208	13	2.2	13	100	0	58	34	0	6	58	1.25
25938355--25938409	14	3.9	14	76	19	51	49	3	0	47	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25940156--25940251	31	3.0	31	79	11	90	48	3	1	46	1.24
25940280--25940331	16	3.1	16	71	10	50	34	0	0	65	0.93
25941261--25941305	16	2.9	16	83	9	58	40	0	4	55	1.20
25947056--25947087	2	16.0	2	100	0	64	0	50	0	50	1.00
25963462--25963526	32	2.0	32	93	0	112	35	12	7	44	1.71
25968284--25968313	12	2.5	12	88	0	51	23	16	26	33	1.96
25968751--25968779	15	1.9	15	100	0	58	0	27	3	68	1.05
25969035--25969083	22	2.2	22	82	10	55	36	0	4	59	1.17
25975663--25975712	25	2.1	23	85	7	64	44	2	0	54	1.11
25975688--25975720	17	2.0	17	88	5	50	33	3	0	63	1.10
25975689--25975734	20	2.5	17	86	10	56	39	2	0	58	1.10
25975723--25975758	17	2.2	17	90	5	56	47	0	0	52	1.00
25977075--25977104	15	2.0	15	93	0	51	56	0	0	43	0.99
25978882--25978924	21	2.0	21	86	0	59	37	6	2	53	1.41
25981902--25981936	10	3.5	10	88	0	52	40	2	8	48	1.49
25983972--25984026	24	2.2	25	77	3	58	43	7	7	41	1.60
25986222--25986269	24	2.0	25	83	4	62	45	4	0	50	1.21
25986442--25986475	13	2.5	14	90	4	52	73	0	2	23	0.97
25999699--25999938	123	2.0	123	96	0	444	50	14	9	25	1.73
26000073--26000138	27	2.4	27	82	0	78	43	3	6	46	1.43
26000219--26000285	28	2.4	28	80	7	75	50	7	1	40	1.39
26001834--26001876	14	3.2	13	77	9	50	37	4	0	58	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26001836--26001876	12	2.9	15	75	20	52	34	4	0	60	1.18
26001818--26002046	68	3.6	60	78	17	180	37	9	3	49	1.50
26001835--26002208	76	5.1	73	79	12	360	37	8	4	50	1.52
26002040--26002078	20	2.0	20	100	0	78	46	0	7	46	1.31
26003294--26003321	2	14.0	2	100	0	56	50	0	0	50	1.00
26003310--26003403	24	3.9	24	90	2	145	46	2	10	40	1.50
26010425--26010459	2	17.5	2	87	0	52	45	0	5	48	1.26
26010675--26010875	111	1.8	110	89	3	314	36	21	11	29	1.89
26010675--26010883	112	1.9	109	88	3	310	36	22	11	29	1.89
26012559--26012594	11	3.3	11	88	0	54	38	5	2	52	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147