Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  15  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3243573--3243635
21
2.8
22
77
13
67
7
17
0
74
1.05
3246969--3247008
16
2.4
17
83
8
55
45
0
5
50
1.23
3247059--3247162
5
19.6
5
68
20
52
75
2
5
15
1.10
3247059--3247148
11
7.7
11
70
15
56
77
2
5
14
1.04
3247059--3247148
6
14.5
6
71
20
53
77
2
5
14
1.04
3247111--3247148
17
2.2
17
90
0
58
81
2
2
13
0.90
3247059--3247149
35
2.6
34
80
13
89
76
2
6
14
1.07
3247692--3247743
26
2.1
25
85
7
70
53
17
1
26
1.54
3248030--3248090
22
2.8
22
85
7
72
73
8
8
9
1.24
3248078--3248164
21
4.1
21
78
8
81
71
2
3
22
1.13
3248078--3248164
42
2.1
42
82
8
106
71
2
3
22
1.13
3248142--3248283
17
8.6
16
68
23
73
64
3
2
29
1.25
3248135--3248292
4
39.2
4
68
15
60
64
3
2
29
1.24
3248100--3248176
20
3.8
21
80
13
81
68
1
2
27
1.10
3248093--3248292
21
9.0
21
67
18
86
65
3
3
28
1.24
3248156--3248217
33
1.9
32
84
15
83
61
4
1
32
1.27
3248091--3248197
17
5.6
19
75
19
64
66
1
3
28
1.19
3251660--3251706
22
2.1
22
84
0
58
59
0
0
40
0.97
3259919--3259972
23
2.3
24
80
6
65
18
24
9
48
1.77
3260853--3260894
19
2.2
19
86
0
57
19
11
4
64
1.44
3261037--3261111
37
2.0
37
92
0
123
26
17
10
45
1.81
3267338--3267381
5
8.0
5
83
16
52
18
0
0
81
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3267338--3267380
11
3.8
11
93
6
77
16
0
0
83
0.64
3267332--3267381
17
2.9
17
85
14
68
18
0
0
82
0.68
3268355--3268408
26
2.1
26
82
0
63
42
3
5
48
1.44
3268525--3268970
171
2.6
171
91
1
691
41
8
12
37
1.74
3269989--3270128
70
2.0
70
92
2
237
25
12
22
39
1.89
3274433--3274485
21
2.5
21
87
0
70
47
5
13
33
1.66
3274646--3274739
22
4.4
22
69
15
70
31
11
20
36
1.88
3276232--3276625
143
2.7
145
78
8
349
34
13
10
41
1.78
3280471--3280531
7
9.1
7
72
22
51
44
39
1
14
1.55
3280494--3280525
12
2.6
13
85
14
50
40
40
3
15
1.63
3281418--3281486
20
3.6
18
68
19
50
52
0
1
46
1.09
3282603--3282628
13
2.0
13
100
0
52
46
0
0
53
1.00
3282963--3282995
17
1.9
17
93
0
57
42
3
0
54
1.15
3283980--3284011
13
2.5
13
89
0
55
81
0
0
18
0.70
3291407--3291471
25
2.6
24
83
9
69
55
0
4
40
1.21
3291407--3291466
24
2.5
23
81
10
66
56
0
5
38
1.21
3293468--3293521
22
2.5
22
93
3
92
37
22
12
27
1.91
3298336--3298413
23
3.3
24
80
7
79
41
3
0
55
1.18
3298789--3298822
17
2.0
17
100
0
68
70
0
5
23
1.09
3298898--3298946
25
2.0
25
88
8
73
61
2
4
32
1.26
3298940--3298975
8
4.6
8
86
6
56
38
0
0
61
0.96
3298993--3299042
26
1.9
26
91
0
82
52
2
8
38
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3299031--3299127
43
2.3
41
79
13
99
59
6
3
30
1.37
3299079--3299136
22
2.5
22
80
5
53
60
5
0
34
1.19
3301079--3301118
20
2.0
20
90
0
62
70
0
7
22
1.12
3301559--3301606
18
2.7
18
81
12
62
22
2
0
75
0.91
3301665--3301697
11
3.1
11
95
4
59
63
0
0
36
0.95
3301663--3301696
10
3.3
10
92
8
59
61
0
0
38
0.96
3302003--3302060
23
2.5
23
80
8
64
6
17
1
74
1.12
3302020--3302067
16
3.1
16
84
3
62
4
16
2
77
1.03
3302026--3302072
15
3.1
15
81
6
51
2
12
2
82
0.84
3302039--3302073
10
3.3
10
92
8
52
0
17
0
82
0.66
3303297--3303349
22
2.3
23
87
6
72
43
0
1
54
1.11
3303345--3303376
16
2.0
16
93
0
55
21
6
6
65
1.38
3303578--3303626
20
2.5
20
84
15
66
51
2
4
42
1.32
3303578--3303627
21
2.5
20
81
12
59
52
2
4
42
1.31
3309518--3309553
18
2.0
18
88
0
54
80
2
5
11
0.98
3310581--3310622
18
2.3
18
88
8
59
42
28
4
23
1.74
3310657--3310735
18
4.4
17
80
12
79
37
31
1
29
1.65
3310653--3310735
36
2.3
35
79
6
94
39
31
1
27
1.64
3310675--3310790
36
3.2
36
78
9
114
37
30
2
30
1.71
3311158--3311201
15
2.9
15
80
12
54
54
9
13
22
1.67
3311369--3311424
15
3.6
15
79
15
60
46
1
17
33
1.59
3317109--3317153
23
2.0
23
90
0
72
75
6
6
11
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3318120--3318164
21
2.1
21
84
8
56
62
2
0
35
1.08
3318315--3318341
14
1.9
14
100
0
54
7
7
0
85
0.75
3319274--3319430
52
3.0
52
85
7
203
41
8
24
26
1.83
3325159--3325196
11
3.5
11
85
0
58
52
0
0
47
1.00
3327957--3328123
76
2.2
76
98
0
325
38
22
10
28
1.87
3329774--3330095
160
2.0
158
94
2
565
36
15
7
40
1.76
3333789--3333924
47
2.7
49
75
11
127
36
4
8
51
1.52
3333860--3333901
22
1.9
22
85
9
59
35
2
7
54
1.41
3333868--3333909
22
1.9
22
85
0
57
35
2
9
52
1.47
3333929--3333986
22
2.8
21
82
12
66
44
0
0
55
0.99
3341031--3341107
17
4.5
17
95
0
136
45
0
12
41
1.43
3348699--3348738
20
2.0
20
95
0
71
42
2
10
45
1.51
3355118--3355171
26
2.1
26
82
0
63
35
11
14
38
1.82
3356401--3356469
33
2.1
33
100
0
138
37
24
8
28
1.85
3357681--3357761
42
1.9
42
92
0
135
39
12
14
33
1.84
3358741--3359270
264
2.0
263
91
1
857
26
16
20
37
1.93
3359890--3359969
39
2.1
39
95
0
142
21
2
38
37
1.67
3361534--3361723
96
2.0
96
94
0
335
47
3
17
31
1.65
3367835--3367859
2
12.5
2
100
0
50
48
0
0
52
1.00
3379952--3380077
65
1.9
65
85
0
171
39
7
14
38
1.73
3386601--3386654
3
18.0
3
96
0
99
0
35
0
64
0.94
3390051--3390192
52
2.7
51
81
6
160
45
6
16
32
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3391013--3391163
52
2.9
52
84
3
171
48
6
16
28
1.71
3394658--3394723
3
22.0
3
93
0
114
65
3
0
31
1.08
3396049--3396141
46
2.0
46
95
0
168
32
16
30
21
1.95
3402430--3402476
7
6.9
7
79
18
55
23
2
2
72
1.06
3402430--3402476
15
3.5
13
83
16
60
23
2
2
72
1.06
3411398--3411456
29
2.0
29
80
6
66
6
20
8
64
1.44
3413864--3413890
10
2.7
10
100
0
54
74
0
18
7
1.05
3414111--3414156
25
2.0
25
83
12
62
39
4
0
56
1.19
3419737--3419839
52
2.0
52
84
1
136
27
17
7
47
1.75
3420615--3420769
52
3.0
52
85
8
183
29
14
6
50
1.67
3425567--3425632
29
2.3
28
82
10
71
33
1
6
59
1.31
3430542--3430620
40
2.0
39
92
2
131
22
24
6
46
1.75
3432110--3432203
42
2.2
42
94
0
170
26
15
27
29
1.96
3436097--3436194
48
2.0
48
98
0
187
38
2
25
33
1.68
3436763--3436791
2
14.5
2
100
0
58
0
48
0
51
1.00
3439782--3439815
11
3.0
11
87
8
50
64
14
20
0
1.28
3440556--3440608
15
3.4
15
82
10
61
47
1
0
50
1.12
3440550--3440608
8
7.5
8
79
11
68
45
1
1
50
1.21
3450379--3450417
18
2.2
17
86
4
51
76
7
5
10
1.13
3452283--3452371
6
14.8
6
71
15
60
19
3
3
74
1.11
3452286--3452333
9
5.3
9
78
7
53
16
4
2
77
1.03
3452285--3452387
6
20.2
5
70
21
56
19
4
2
72
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3452260--3452371
41
2.8
42
83
10
130
18
5
3
72
1.19
3452286--3452371
36
2.4
35
83
13
95
18
3
3
74
1.11
3452305--3452394
31
2.9
30
77
19
96
22
6
2
68
1.24
3452994--3453062
30
2.3
29
82
7
77
56
14
8
20
1.64
3457145--3457481
67
5.1
65
71
11
195
26
20
7
45
1.77
3457700--3457724
2
12.5
2
100
0
50
48
0
0
52
1.00
3457952--3457986
19
1.9
19
88
11
56
22
14
0
62
1.31
3458002--3458118
6
18.5
6
70
15
58
22
5
1
70
1.15
3458055--3458143
5
17.2
5
73
15
51
19
8
2
69
1.25
3458055--3458092
14
2.7
14
80
12
51
21
5
0
73
1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147