genome.fa.s445.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  51  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9976512--9977096	311	1.9	311	86	1	850	28	23	18	29	1.98
9985561--9985611	24	2.1	24	88	0	75	54	1	0	43	1.11
9985580--9985616	19	2.0	19	94	5	67	56	0	0	43	0.99
9987774--9987826	17	3.1	16	89	8	70	66	0	0	33	0.92
9987758--9987800	3	14.3	3	85	0	59	58	0	0	41	0.98
9987880--9987945	23	2.9	23	83	0	78	13	43	19	22	1.86
9988872--9988917	22	2.0	22	87	4	65	41	2	6	50	1.40
9991159--9991204	24	1.9	24	86	0	65	50	4	10	34	1.57
9995962--9996005	11	3.9	11	85	11	54	86	0	9	4	0.70
9997217--9997266	3	16.3	3	82	12	57	68	4	0	28	1.08
9997555--9997594	20	2.0	20	85	0	53	55	27	0	17	1.43
9997585--9997730	60	2.5	60	86	3	197	45	28	4	20	1.71
9997746--9997797	14	3.7	14	68	0	50	53	30	0	15	1.42
9997883--9997936	21	2.5	22	75	3	56	48	24	3	24	1.67
9997942--9998003	15	4.3	14	80	10	63	53	25	1	19	1.54
10000333--10000411	41	1.9	41	94	0	140	32	20	10	36	1.86
10004045--10004085	15	2.7	15	88	7	57	82	4	7	4	0.93
10004045--10004085	16	2.7	16	92	7	68	82	4	7	4	0.93
10006544--10006895	110	3.2	108	83	6	431	24	20	15	39	1.91
10006652--10006696	22	2.0	22	87	8	65	31	26	11	31	1.91
10006954--10007015	22	2.8	22	85	2	79	25	24	16	33	1.95
10006962--10007024	22	2.9	21	83	4	72	30	25	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10007094--10007203	22	5.0	21	73	12	96	30	23	15	30	1.95
10007107--10007190	44	1.9	44	90	0	132	30	23	14	30	1.94
10006874--10007146	132	2.1	132	88	1	404	23	20	18	38	1.94
10006874--10007452	308	1.9	308	85	2	797	23	20	17	38	1.93
10006962--10007321	176	2.0	176	88	1	524	25	21	16	36	1.94
10007402--10007467	22	3.0	22	80	8	80	30	21	16	31	1.95
10007138--10007555	132	3.2	130	81	4	462	23	20	17	38	1.93
10007457--10007627	88	1.9	88	83	2	218	23	18	16	41	1.90
10007622--10007664	22	2.0	22	86	9	61	30	23	16	30	1.96
10007545--10007772	110	2.1	110	85	0	303	25	20	16	38	1.92
10007732--10007792	22	2.9	21	83	9	70	32	22	14	29	1.94
10007882--10007924	22	2.0	22	90	0	68	32	20	13	32	1.92
10007622--10008124	132	3.8	132	81	2	526	22	19	17	40	1.92
10007994--10008058	22	3.0	22	78	14	62	29	18	18	33	1.95
10008069--10008170	37	2.8	37	86	0	150	16	22	13	47	1.82
10008591--10008651	32	2.0	32	83	6	81	27	47	9	14	1.76
10008927--10008965	10	3.7	11	83	10	55	76	15	0	7	0.99
10009726--10009766	3	13.3	3	89	5	64	65	4	0	29	1.13
10010051--10010090	20	2.0	20	85	0	53	55	30	0	15	1.41
10010064--10010117	13	3.9	13	75	13	54	46	35	3	14	1.63
10010064--10010253	30	6.4	29	73	7	121	45	28	4	22	1.71
10010068--10010254	60	3.1	58	77	6	169	44	28	4	22	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10010381--10010450	28	2.5	27	80	11	79	51	28	1	18	1.55
10014449--10014477	8	3.6	8	100	0	58	34	0	27	37	1.57
10022958--10023041	22	3.8	22	82	0	69	36	7	9	46	1.64
10023273--10023355	22	3.7	22	75	9	78	39	10	2	46	1.52
10023264--10023362	22	4.5	22	72	9	76	43	10	3	43	1.53
10023630--10023664	18	1.9	18	94	0	61	34	8	8	48	1.64
10024148--10024303	60	2.5	62	88	7	246	39	12	7	40	1.71
10024331--10024400	35	2.0	35	83	10	90	74	1	7	17	1.11
10024958--10025022	17	3.9	17	82	8	71	66	0	7	26	1.19
10024949--10025030	32	2.5	34	78	7	89	70	0	6	23	1.09
10024952--10025063	24	4.9	24	70	13	67	68	0	7	24	1.14
10024971--10025097	67	1.9	67	81	12	154	70	0	6	22	1.09
10024966--10025066	17	6.1	17	70	15	68	69	0	6	23	1.13
10024962--10025076	21	5.5	21	72	20	89	68	0	6	25	1.12
10025036--10025088	18	2.8	19	80	2	63	67	0	3	28	1.07
10024962--10025086	20	6.1	20	69	22	71	68	0	6	24	1.12
10025288--10025337	1	50.0	1	79	0	55	0	2	8	90	0.54
10025288--10025340	17	3.1	16	86	10	70	0	1	9	88	0.58
10025290--10025335	23	2.0	24	95	4	85	0	2	8	89	0.57
10025356--10025654	41	7.1	41	85	6	316	37	21	15	25	1.93
10025400--10025624	83	2.7	83	88	2	319	36	22	16	25	1.94
10025356--10025654	83	3.6	83	84	6	311	37	21	15	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10027283--10027320	8	4.9	8	90	3	60	7	15	0	76	1.01
10027279--10027349	16	4.7	15	73	16	67	5	15	0	78	0.92
10027314--10027362	23	2.2	21	89	7	71	4	16	0	79	0.88
10027299--10027355	30	2.0	28	89	6	87	3	17	0	78	0.88
10027299--10027362	11	6.2	10	72	18	51	4	17	0	78	0.92
10030303--10030385	41	2.0	41	92	0	139	49	14	13	22	1.78
10031325--10031724	60	6.7	59	80	4	453	37	13	6	42	1.70
10031324--10031724	121	3.4	119	92	3	671	37	13	6	42	1.70
10031744--10031822	5	14.8	5	78	15	63	75	1	3	18	1.02
10031744--10031825	6	14.0	6	76	13	64	75	1	3	19	1.02
10031744--10031822	29	2.8	28	76	16	81	75	1	3	18	1.02
10031744--10031823	23	3.5	22	79	16	83	76	1	3	18	1.01
10031749--10031821	16	4.5	16	76	17	62	75	1	4	19	1.04
10032385--10032501	45	2.7	43	78	11	121	71	1	5	21	1.14
10032466--10032504	9	4.2	9	80	6	51	82	0	0	17	0.68
10032646--10032698	22	2.4	22	87	0	79	41	7	5	45	1.56
10032646--10032724	22	3.6	22	81	6	72	41	6	7	44	1.58
10032743--10032879	22	6.2	22	76	5	71	42	8	5	43	1.60
10032774--10033287	22	23.4	22	68	6	166	35	9	7	48	1.62
10032807--10033280	66	7.2	65	70	8	251	34	8	6	49	1.61
10033028--10033297	44	6.1	44	75	8	185	33	9	4	52	1.55
10033028--10033429	66	6.0	64	72	13	238	35	8	4	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10033740--10033843	22	4.8	22	82	7	113	34	9	2	52	1.49
10033870--10033930	22	2.8	22	75	5	61	29	6	6	57	1.49
10033949--10034006	22	2.6	22	80	0	71	39	8	0	51	1.33
10033989--10034091	22	4.8	22	71	8	70	41	7	2	47	1.47
10034234--10034283	20	2.5	19	80	6	55	74	2	4	20	1.08
10036141--10036192	23	2.2	24	87	12	74	32	3	5	57	1.40
10036637--10036942	152	2.0	152	84	3	402	44	5	7	42	1.57
10036978--10037010	2	16.5	2	100	0	66	51	0	0	48	1.00
10037252--10037287	2	18.5	2	94	5	65	52	0	0	47	1.00
10040731--10040768	6	6.5	6	85	14	53	71	0	28	0	0.87
10040732--10040768	12	3.0	13	88	11	60	70	0	29	0	0.88
10040726--10040767	18	2.3	18	95	4	75	71	0	28	0	0.86
10041501--10041538	20	2.0	20	89	5	60	28	5	2	63	1.30
10062919--10063236	22	14.9	22	69	15	132	52	5	8	33	1.55
10063129--10063238	44	2.5	44	83	0	148	54	5	6	33	1.49
10063128--10063237	11	10.0	11	68	2	60	53	5	6	34	1.49
10063734--10063785	22	2.4	21	75	15	52	53	3	7	34	1.48
10063791--10063839	22	2.2	22	100	0	98	46	10	12	30	1.74
10063769--10063913	22	6.8	22	72	15	72	48	8	9	33	1.66
10064115--10064199	22	3.9	22	77	0	71	43	7	12	36	1.70
10064200--10064306	22	4.9	22	87	0	133	48	7	2	41	1.46
10064211--10064341	44	3.0	43	78	7	140	48	8	4	38	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10064200--10064339	66	2.1	66	80	5	158	47	7	5	40	1.53
10064213--10064384	22	7.9	21	77	10	109	46	8	7	37	1.62
10064759--10064838	22	3.8	21	77	8	63	45	11	7	36	1.68
10064844--10064970	22	5.8	21	79	9	94	45	10	7	37	1.65
10064847--10064970	66	1.9	66	83	3	160	45	10	6	37	1.64
10067014--10067056	20	2.3	18	88	8	59	32	4	2	60	1.30
10069516--10069573	30	1.9	30	86	6	82	5	8	5	81	0.99
10069591--10069641	21	2.4	22	84	15	72	41	1	1	54	1.22
10069599--10069650	18	2.8	18	83	13	70	50	1	0	48	1.12
10069599--10069645	20	2.6	17	87	12	67	46	2	0	51	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147