genome.fa.s445.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  24  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5150709--5150767	21	2.9	21	71	26	54	45	1	1	50	1.21
5151174--5151221	14	3.1	14	76	21	51	66	6	0	27	1.15
5151185--5151236	18	2.9	18	83	11	63	67	5	1	25	1.23
5151339--5152337	370	2.7	370	84	1	1293	20	30	21	27	1.98
5154740--5154787	18	2.7	18	77	9	53	47	0	2	50	1.12
5155255--5155314	29	2.1	29	90	6	95	38	0	5	56	1.21
5155531--5155569	19	2.1	18	85	4	51	53	5	2	38	1.37
5155745--5155869	42	3.0	42	97	0	232	32	15	16	36	1.90
5156155--5156206	23	2.3	22	83	3	59	53	1	0	44	1.11
5159938--5160103	69	2.5	65	74	14	149	32	9	12	45	1.73
5160144--5160189	24	1.9	24	100	0	92	26	8	21	43	1.81
5160149--5160205	24	2.3	24	84	3	69	29	12	14	43	1.81
5161086--5161366	139	2.0	138	93	0	472	34	16	12	36	1.86
5162274--5162314	21	1.9	22	85	5	57	68	2	14	14	1.32
5164013--5164037	13	1.9	13	100	0	50	76	0	0	24	0.80
5164122--5164196	32	2.3	32	81	0	87	48	5	2	44	1.39
5164136--5164198	32	2.0	32	87	0	90	46	4	3	46	1.40
5169927--5169972	24	1.9	24	86	0	65	52	0	0	47	1.00
5170235--5170292	29	2.0	28	87	12	82	62	1	0	36	1.06
5173843--5173907	32	2.1	31	82	8	78	67	6	7	18	1.36
5177525--5177571	19	2.6	18	75	18	53	23	4	2	70	1.16
5179191--5179234	22	2.0	22	86	0	61	47	6	13	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5179281--5179480	18	11.3	18	68	22	106	51	0	3	45	1.22
5179294--5179386	22	4.2	21	80	12	98	55	1	1	41	1.14
5179281--5179543	87	3.0	85	74	16	229	52	1	2	43	1.22
5179281--5179481	21	10.4	20	70	18	81	51	0	3	44	1.22
5179282--5179552	24	10.7	26	65	20	78	53	1	2	42	1.21
5179282--5179542	15	16.6	15	66	18	104	52	1	2	43	1.22
5179470--5179549	35	2.3	35	75	12	83	60	2	0	37	1.11
5179573--5179660	19	4.9	18	68	26	62	47	1	0	51	1.08
5179570--5179645	18	4.1	19	69	16	52	44	1	0	53	1.08
5179629--5179669	16	2.7	15	85	7	55	48	2	0	48	1.14
5179629--5179694	15	4.5	16	70	24	56	48	1	0	50	1.10
5179639--5179688	26	2.0	25	96	4	91	52	2	0	46	1.12
5181621--5181658	2	19.0	2	88	0	58	50	0	2	47	1.15
5182169--5182210	13	3.5	12	87	9	59	38	0	0	61	0.96
5185204--5185250	23	2.0	23	83	0	58	36	0	2	61	1.08
5187534--5187585	21	2.6	21	81	6	63	40	1	0	57	1.10
5188075--5188105	16	1.9	16	93	0	53	41	0	3	54	1.16
5188135--5188196	27	2.3	26	83	2	70	51	1	0	46	1.10
5189329--5189390	33	1.9	33	86	3	90	29	9	4	56	1.52
5191780--5191821	18	2.3	19	91	4	68	33	0	0	66	0.92
5191860--5191898	12	3.2	12	82	7	51	61	0	0	38	0.96
5193932--5193990	23	2.8	22	80	14	70	49	1	0	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5194026--5194063	17	2.4	16	86	8	51	28	2	7	60	1.38
5195268--5195571	154	2.0	154	92	0	500	38	16	23	21	1.93
5197059--5197092	17	2.0	17	88	11	52	44	11	14	29	1.81
5200943--5200990	23	2.0	24	88	4	71	66	2	0	31	1.03
5200981--5201021	17	2.3	18	91	4	66	46	2	0	51	1.14
5201364--5201397	12	2.8	12	86	0	50	38	2	0	58	1.13
5205979--5206005	12	2.2	12	100	0	54	22	14	7	55	1.64
5206311--5206359	17	2.9	17	79	14	57	32	12	20	34	1.90
5208123--5208149	2	13.5	2	100	0	54	48	0	0	51	1.00
5209479--5209540	25	2.4	25	91	2	97	41	8	3	46	1.49
5209925--5209972	21	2.3	21	100	0	96	31	16	29	22	1.96
5215186--5215224	2	19.5	2	89	0	60	53	2	0	43	1.14
5215782--5215842	28	2.1	30	85	11	83	44	0	0	55	0.99
5219987--5220031	23	2.0	23	81	0	54	37	8	8	44	1.67
5223084--5223150	29	2.3	29	76	2	71	58	1	0	40	1.07
5225209--5225244	17	2.2	16	90	5	54	16	8	11	63	1.49
5227128--5227170	22	2.0	22	86	13	63	41	2	2	53	1.26
5228484--5228525	22	1.9	22	85	9	59	21	28	2	47	1.63
5229071--5229126	28	2.0	28	82	0	67	35	1	3	58	1.26
5230106--5230345	114	2.1	117	91	3	389	49	5	4	41	1.44
5232387--5232440	17	3.2	17	79	10	65	51	5	1	40	1.36
5235771--5235844	38	1.9	39	86	8	107	37	5	17	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5237305--5237350	3	15.3	3	100	0	92	67	0	0	32	0.91
5242218--5242253	18	2.0	18	100	0	72	50	22	5	22	1.70
5243222--5243272	24	2.1	24	88	0	75	68	7	1	21	1.25
5245614--5245669	28	2.0	27	83	10	69	39	0	5	55	1.23
5245751--5245786	7	4.9	7	87	12	54	41	0	0	58	0.98
5245756--5245786	16	1.9	16	100	0	62	38	0	0	61	0.96
5245790--5245822	13	2.5	14	85	14	52	57	0	0	42	0.98
5246494--5246567	18	4.1	19	72	18	68	48	2	0	48	1.15
5246932--5246969	20	1.9	20	88	0	58	76	0	0	23	0.79
5247330--5247362	16	2.1	16	100	0	66	30	0	0	69	0.88
5251364--5251409	15	3.1	15	79	14	51	0	23	0	76	0.79
5251344--5251398	24	2.2	26	90	6	87	3	18	1	76	1.02
5251476--5251509	16	2.1	17	88	5	52	2	20	0	76	0.92
5251458--5251517	22	2.6	22	84	10	68	3	21	0	75	0.95
5252731--5252760	13	2.4	13	94	5	53	43	0	0	56	0.99
5252669--5252977	167	1.9	167	84	2	415	37	7	9	45	1.65
5253643--5253686	19	2.4	18	84	3	61	68	11	0	20	1.20
5254262--5254291	14	2.1	14	93	0	51	80	3	0	16	0.85
5254503--5254540	17	2.2	18	86	13	53	7	0	5	86	0.69
5254556--5254662	40	2.7	41	79	10	130	51	14	12	21	1.75
5255842--5256016	74	2.4	74	82	1	199	32	18	20	28	1.96
5263004--5263181	75	2.4	75	82	0	223	33	19	20	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5270695--5271031	59	5.7	58	87	6	480	34	12	6	46	1.67
5270695--5271031	119	2.9	116	86	4	478	34	12	6	46	1.67
5270695--5271028	178	1.9	177	93	4	575	35	12	5	46	1.66
5271046--5271125	5	15.6	5	70	21	51	76	1	7	15	1.07
5271041--5271206	9	18.1	9	69	22	71	71	3	6	19	1.20
5271045--5271086	22	1.9	22	90	9	68	71	0	11	16	1.14
5271053--5271119	35	1.9	35	84	6	91	77	1	5	14	1.03
5271085--5271125	21	1.9	22	90	5	66	80	2	4	12	0.97
5271153--5271200	4	11.5	4	86	8	69	77	2	0	20	0.88
5271153--5271206	13	4.2	13	90	4	83	77	1	0	20	0.86
5271153--5271206	17	3.2	17	86	5	74	77	1	0	20	0.86
5271153--5271200	25	1.9	25	95	0	87	77	2	0	20	0.88
5272069--5272182	33	3.3	33	79	13	106	68	2	7	21	1.28
5272172--5272350	4	45.2	4	69	20	69	67	2	1	29	1.13
5272175--5272263	17	4.9	19	74	20	59	68	1	0	30	0.97
5272174--5272263	31	2.9	30	83	8	110	68	1	0	30	0.96
5272175--5272240	36	1.9	33	84	9	87	71	0	0	28	0.87
5272190--5272278	31	2.9	29	79	17	83	64	3	0	32	1.10
5272614--5273004	41	9.4	41	87	6	463	38	21	17	23	1.93
5278098--5278375	59	4.7	59	90	5	438	33	13	6	47	1.68
5278098--5278375	119	2.4	118	91	4	438	33	13	6	47	1.68
5278386--5278553	9	18.0	9	69	22	64	71	2	6	19	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5278390--5278431	22	1.9	22	90	9	68	71	0	11	16	1.14
5278413--5278477	15	4.3	15	70	16	53	75	1	9	13	1.11
5278498--5278542	4	11.5	4	86	9	58	77	2	0	20	0.87
5278504--5278556	22	2.4	21	78	12	61	79	1	0	18	0.83
5279357--5279424	27	2.5	27	83	9	77	70	1	8	19	1.21
5279443--5279630	4	47.2	4	70	20	78	67	2	1	29	1.12
5279452--5279639	20	8.7	22	69	25	95	66	2	1	29	1.14
5287058--5287083	11	2.4	11	100	0	52	30	7	0	61	1.24
5289697--5289752	27	2.1	27	83	6	69	33	1	0	64	1.04
5289716--5289771	11	4.9	11	85	10	69	32	1	0	66	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147