genome.fa.s445.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  64  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12062257--12062623	13	28.2	13	62	26	52	55	2	2	39	1.26
12062248--12062404	71	2.3	68	82	11	180	56	1	1	40	1.21
12062346--12062403	29	1.9	31	82	6	75	55	3	1	39	1.27
12062387--12062584	41	5.1	38	72	18	131	55	2	2	39	1.27
12062246--12062628	18	21.7	17	69	24	180	55	2	2	39	1.25
12062724--12062777	16	3.8	16	64	31	50	53	1	0	44	1.11
12062717--12062785	25	2.8	24	82	6	93	49	1	1	47	1.19
12063077--12063336	18	14.2	18	69	22	127	54	2	1	40	1.25
12063129--12063371	41	5.6	41	72	21	135	54	2	1	41	1.23
12063130--12063359	23	10.1	23	70	16	124	53	3	1	41	1.24
12063213--12063359	74	2.0	75	82	9	185	53	2	1	42	1.23
12063074--12063366	28	10.0	28	65	20	81	54	2	1	40	1.25
12063402--12063445	19	2.3	18	84	7	52	43	2	0	54	1.12
12063462--12063533	9	8.4	9	75	17	55	48	1	2	47	1.25
12063462--12063532	26	2.8	25	87	6	92	49	1	2	46	1.25
12065236--12065281	21	2.2	21	84	7	58	32	0	2	65	1.05
12065244--12065281	12	3.4	12	82	17	55	31	0	0	68	0.90
12066759--12066831	37	2.0	37	86	0	101	23	10	46	19	1.81
12066865--12066945	7	10.0	8	75	19	71	14	0	11	74	1.08
12066867--12066916	24	2.2	22	89	7	73	10	0	12	78	0.98
12066867--12066945	32	2.4	34	87	6	110	13	0	11	74	1.07
12066865--12066943	18	4.3	18	75	17	65	15	0	10	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12066891--12066945	15	3.4	15	79	18	65	16	0	10	72	1.11
12066896--12066953	17	3.4	17	75	15	57	20	0	8	70	1.13
12067032--12067104	27	2.6	28	86	4	103	32	20	23	23	1.98
12067383--12067835	48	9.3	49	82	6	431	40	18	10	30	1.84
12067383--12067835	98	4.6	99	80	7	478	40	18	10	30	1.84
12067474--12067837	195	1.9	197	86	3	529	40	19	10	30	1.84
12067377--12067837	147	3.1	147	80	7	535	40	18	10	30	1.84
12070282--12070338	27	2.1	27	100	0	114	36	14	10	38	1.80
12071040--12071088	22	2.2	22	85	0	62	61	2	0	36	1.08
12071988--12072060	37	2.0	37	91	5	121	21	9	47	20	1.78
12072111--12072147	15	2.5	15	95	0	65	13	0	10	75	1.04
12072094--12072145	17	3.2	17	81	10	63	11	1	7	78	1.02
12072233--12072310	28	2.8	28	94	0	138	34	16	23	25	1.95
12072478--12072536	24	2.4	25	80	8	68	32	1	0	66	1.02
12074505--12074538	2	17.0	2	93	0	59	50	47	0	2	1.16
12089868--12089920	28	1.9	27	85	11	72	62	3	3	30	1.30
12089868--12089920	27	1.9	28	88	3	81	62	3	3	30	1.30
12091012--12091044	6	5.7	6	85	7	50	30	0	0	69	0.88
12091009--12091044	17	2.1	17	94	5	63	30	0	0	69	0.89
12095366--12095391	8	3.2	8	100	0	52	26	11	23	38	1.89
12098041--12098079	20	2.0	21	90	10	64	28	5	23	43	1.75
12098678--12098721	23	1.9	23	86	9	63	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12105193--12105280	34	2.5	33	80	10	88	46	0	1	52	1.08
12105200--12105246	23	2.0	25	87	8	71	44	0	0	55	0.99
12107800--12107854	13	4.6	13	72	23	50	49	1	0	49	1.11
12107800--12107863	33	1.9	34	83	3	85	53	1	0	45	1.10
12108177--12108234	27	2.1	27	90	6	91	34	12	3	50	1.57
12109270--12109577	162	1.9	164	85	5	437	44	22	12	20	1.85
12118843--12118896	17	3.2	16	80	12	56	1	20	1	75	0.98
12119168--12119217	19	2.6	19	78	6	57	76	6	8	10	1.17
12119256--12119313	26	2.2	26	96	0	107	39	15	15	29	1.88
12125170--12125215	22	2.1	22	100	0	92	47	13	21	17	1.81
12125725--12125768	20	2.2	19	84	11	61	52	0	0	47	1.00
12125728--12125768	21	2.0	21	90	4	66	51	0	0	48	1.00
12125806--12125989	18	10.1	18	74	17	148	55	1	0	42	1.11
12125822--12126008	41	4.3	43	71	22	126	56	1	0	42	1.10
12125811--12126017	39	5.1	39	71	15	152	57	0	0	40	1.12
12125974--12126023	23	2.2	23	82	7	57	64	0	2	34	1.05
12126092--12126137	16	2.9	16	78	12	58	41	4	0	54	1.20
12126096--12126137	17	2.6	16	78	10	50	42	2	0	54	1.13
12126192--12126260	33	2.1	33	81	7	79	59	5	0	34	1.21
12129967--12130029	31	2.0	31	87	3	90	57	9	0	33	1.31
12130878--12130936	27	2.2	27	90	0	91	50	1	16	30	1.55
12131309--12131347	18	2.2	18	86	9	53	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12137466--12137506	22	1.9	22	85	5	57	39	0	0	60	0.96
12138136--12138173	19	2.0	20	84	5	51	39	5	0	55	1.23
12141530--12141574	18	2.5	18	81	0	63	40	31	4	24	1.75
12154436--12154471	6	5.8	6	90	3	54	19	44	0	36	1.51
12154809--12154853	20	2.3	20	88	3	65	33	2	15	48	1.57
12155445--12155483	4	9.8	4	100	0	78	51	23	0	25	1.49
12156533--12156557	2	12.5	2	100	0	50	0	48	0	52	1.00
12162770--12162806	19	1.9	19	89	10	58	37	2	0	59	1.12
12162867--12162925	26	2.4	25	82	5	75	49	1	1	47	1.21
12162867--12162944	24	3.2	25	82	10	90	48	1	1	48	1.17
12162935--12162964	9	3.2	9	95	4	51	63	0	0	36	0.95
12162937--12162966	10	3.1	10	95	4	53	63	0	0	36	0.95
12162904--12162970	26	2.7	26	80	11	70	55	0	1	43	1.09
12162934--12162978	19	2.3	20	75	17	51	57	0	0	42	0.98
12164624--12164670	13	3.8	13	80	8	53	51	2	0	46	1.13
12164984--12165039	21	2.8	21	78	13	55	53	1	0	44	1.11
12165893--12165938	22	2.2	21	81	11	51	30	2	6	60	1.34
12166620--12166655	18	2.0	18	88	0	54	66	2	0	30	1.06
12166715--12166781	30	2.2	31	82	12	77	49	0	0	50	1.00
12166890--12166924	15	2.4	14	90	4	52	88	0	2	8	0.61
12178126--12178173	24	2.0	24	95	0	87	20	16	27	35	1.94
12179459--12179503	22	2.0	24	82	8	58	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12179530--12179575	10	4.7	10	81	5	58	65	0	0	34	0.93
12179532--12179575	20	2.2	20	92	4	72	68	0	0	31	0.90
12180465--12180497	5	6.8	5	89	6	50	0	15	0	84	0.61
12204569--12204624	3	18.7	3	100	0	112	66	0	0	33	0.92
12204974--12205011	20	1.9	19	85	15	51	65	7	2	23	1.32
12205645--12205675	14	2.2	14	94	0	53	9	19	22	48	1.78
12210406--12210442	18	2.0	19	85	15	51	67	0	2	29	1.04
12210412--12210454	17	2.5	17	80	3	50	67	2	4	25	1.22
12213946--12213978	16	2.0	17	88	5	50	75	9	3	12	1.14
12215561--12215602	18	2.3	18	84	8	50	33	4	33	28	1.78
12218896--12219109	70	3.1	70	72	9	186	45	8	19	26	1.79
12218904--12219099	35	5.6	35	70	10	141	45	7	19	27	1.77
12219006--12219113	35	3.1	33	77	17	103	45	9	21	24	1.80
12220670--12220712	17	2.6	17	85	3	52	4	6	2	86	0.79
12231703--12231742	3	13.3	3	100	0	80	32	0	0	67	0.91
12231768--12231812	21	2.2	21	84	4	56	60	2	6	31	1.35
12232102--12232212	58	1.9	58	90	0	177	29	23	16	30	1.96
12233221--12233438	73	3.0	73	81	2	258	44	14	23	16	1.85
12233773--12233802	2	15.0	2	100	0	60	50	0	0	50	1.00
12235432--12235472	14	2.8	15	81	3	57	24	0	7	68	1.15
12244947--12244998	27	2.0	24	85	10	68	57	1	3	36	1.28
12249905--12249960	22	2.6	23	77	11	64	48	1	1	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12251267--12251338	31	2.4	30	84	9	92	44	0	1	54	1.08
12252147--12252221	20	3.8	18	72	16	60	45	0	5	49	1.25
12252150--12252222	29	2.4	29	79	4	83	46	0	5	47	1.25
12253292--12253674	201	1.9	201	87	2	563	27	23	17	31	1.97
12254256--12254327	31	2.3	31	75	0	81	38	1	0	59	1.06
12254322--12254357	17	2.2	17	90	5	56	47	2	0	50	1.15
12264935--12264968	3	11.3	3	100	0	68	67	0	0	32	0.91
12265873--12266061	50	3.9	49	76	8	174	39	13	14	32	1.84
12266413--12266602	94	2.0	93	91	3	310	41	16	12	30	1.85
12266931--12266960	12	2.5	12	94	0	51	20	6	0	73	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147