Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  71  of  147  ( 17591 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13419721--13419815
3
31.0
3
69
16
52
36
1
3
58
1.21
13419721--13419817
9
10.9
9
73
13
58
38
1
3
57
1.21
13419698--13419816
16
6.9
17
68
20
59
40
0
3
55
1.22
13419722--13419767
16
2.9
16
90
3
76
36
0
4
58
1.18
13422584--13422612
14
2.1
14
100
0
58
37
20
13
27
1.91
13427162--13427191
11
2.6
11
94
5
51
60
0
0
40
0.97
13428903--13428975
38
1.9
38
88
0
110
43
8
8
39
1.64
13455469--13455725
130
2.0
131
81
8
301
37
8
8
44
1.66
13457044--13457108
30
2.1
31
88
5
96
18
0
41
40
1.51
13457008--13457112
16
6.9
16
73
7
85
17
1
33
47
1.58
13458500--13458546
23
2.0
23
87
0
67
14
14
55
14
1.70
13458618--13458660
3
14.7
3
80
4
52
39
0
0
60
0.97
13459074--13459125
19
2.5
21
84
15
72
30
0
1
67
1.02
13460114--13460143
15
2.0
15
93
0
51
50
3
0
46
1.18
13460105--13460230
64
2.0
62
92
3
207
46
7
3
42
1.47
13473423--13473495
19
3.8
19
70
13
60
32
0
2
64
1.08
13474606--13474662
1
57.0
1
75
0
51
3
0
8
87
0.64
13474605--13474674
9
7.9
9
80
15
65
2
0
12
84
0.73
13474611--13474671
10
6.2
10
84
7
72
3
0
9
86
0.67
13474611--13474662
19
2.7
19
90
0
77
3
0
7
88
0.62
13474894--13475720
95
8.8
95
84
8
1039
34
27
11
25
1.91
13474894--13475720
191
4.4
191
85
8
1086
34
27
11
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13475459--13475560
35
2.9
35
100
0
204
36
29
11
22
1.90
13475564--13475730
48
3.5
48
90
2
264
34
28
10
27
1.89
13488253--13488352
37
2.7
38
78
6
105
15
26
37
22
1.93
13489196--13489241
10
4.6
10
83
8
58
0
2
15
82
0.76
13489196--13489241
20
2.3
21
85
11
69
0
2
15
82
0.76
13489198--13489253
9
6.2
9
77
8
60
1
1
14
82
0.84
13489191--13489250
29
2.1
28
81
12
68
1
5
13
80
0.96
13497583--13497683
38
2.7
38
81
4
123
13
25
38
21
1.91
13498534--13498576
9
4.7
9
94
5
77
0
2
9
88
0.60
13498532--13498576
19
2.4
19
96
0
81
0
2
11
86
0.65
13507883--13507914
17
1.9
16
93
6
55
56
3
0
40
1.15
13509001--13509033
17
1.9
17
100
0
66
30
18
18
33
1.94
13512686--13512765
41
2.0
41
100
0
160
32
23
15
28
1.95
13527221--13527250
11
2.7
11
100
0
60
36
0
16
46
1.47
13527465--13527551
43
2.0
43
97
0
165
34
11
14
39
1.83
13531023--13531148
64
2.0
64
96
3
238
42
3
6
48
1.44
13532473--13532524
15
3.3
15
81
5
59
53
0
0
46
1.00
13532475--13532513
3
13.0
3
83
0
51
58
0
0
41
0.98
13532587--13532623
11
3.3
11
85
7
56
10
54
18
16
1.71
13540141--13540165
12
2.1
12
100
0
50
48
16
28
8
1.74
13541716--13541742
2
13.5
2
100
0
54
51
0
0
48
1.00
13544293--13544327
12
2.9
12
82
0
52
77
0
2
20
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13545397--13545429
17
1.9
17
88
11
50
24
0
3
72
0.98
13547034--13547115
31
2.6
32
82
5
105
30
15
23
30
1.96
13550486--13550516
3
10.3
3
100
0
62
32
35
0
32
1.58
13551770--13551863
21
4.4
21
73
14
75
45
2
0
52
1.12
13551788--13551901
43
2.6
42
80
12
115
44
2
0
51
1.21
13551874--13551904
16
1.9
16
93
0
53
38
0
0
61
0.96
13564755--13564786
16
2.0
16
93
0
55
34
0
21
43
1.53
13568973--13569003
16
1.9
16
100
0
62
32
0
22
45
1.53
13572467--13572527
32
2.0
31
84
12
81
68
11
1
18
1.27
13573172--13573205
16
2.1
17
94
5
61
64
0
29
5
1.17
13573440--13573473
17
1.9
17
88
5
50
23
5
0
70
1.09
13574001--13574051
20
2.5
20
83
6
57
70
3
1
23
1.14
13575795--13575836
20
2.1
20
100
0
84
42
9
33
14
1.78
13575801--13575844
20
2.2
20
83
0
52
50
9
31
9
1.65
13578591--13578628
20
2.0
20
94
5
69
73
0
18
7
1.06
13584455--13585086
48
12.9
48
77
7
336
30
12
17
39
1.87
13584642--13585070
48
8.8
48
80
4
362
30
12
18
39
1.87
13595536--13596009
51
9.5
51
79
5
287
28
13
20
37
1.91
13595483--13596101
48
12.6
48
78
6
467
30
13
18
37
1.89
13595483--13596039
98
5.7
96
76
7
429
29
13
18
38
1.89
13596193--13596220
5
5.6
5
100
0
56
82
0
17
0
0.68
13596519--13596557
18
2.2
18
90
4
62
74
12
0
12
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13596813--13596837
10
2.5
10
100
0
50
92
0
8
0
0.40
13597240--13597269
14
2.1
14
93
0
51
20
53
3
23
1.60
13598140--13598185
23
2.0
22
83
4
56
30
2
2
65
1.16
13598269--13598321
17
3.2
17
78
21
60
75
3
0
20
0.96
13598255--13598322
17
4.3
16
71
14
52
73
4
0
22
1.01
13611199--13611252
22
2.4
22
84
3
63
46
0
1
51
1.11
13611311--13611363
23
2.2
24
83
6
63
47
1
0
50
1.12
13611205--13611423
114
1.9
115
82
10
279
33
5
5
55
1.46
13611660--13611694
17
2.1
17
94
0
61
42
0
0
57
0.99
13612316--13612482
86
1.9
86
91
0
271
35
10
10
43
1.74
13615758--13616164
15
27.5
15
68
19
144
55
2
1
40
1.20
13615777--13616104
58
5.6
58
70
23
159
55
2
1
40
1.22
13615828--13616160
117
2.8
119
77
12
291
55
2
1
40
1.23
13615939--13616022
16
5.9
15
72
18
63
57
2
0
40
1.12
13615996--13616145
59
2.5
58
72
20
112
56
0
1
42
1.07
13615970--13616150
23
7.9
23
73
20
125
56
0
1
41
1.11
13615937--13616151
102
2.1
105
81
10
257
56
0
0
41
1.12
13616005--13616158
82
1.9
83
87
5
231
56
0
1
41
1.10
13615762--13616148
27
14.3
26
66
22
110
55
2
1
41
1.19
13616180--13616248
19
3.7
18
74
12
59
44
1
0
53
1.09
13623744--13623808
32
2.0
32
96
0
121
29
18
7
44
1.77
13626769--13626809
21
2.0
20
90
4
64
36
9
12
41
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13633512--13633554
16
2.7
16
82
7
52
53
4
2
39
1.34
13636747--13636790
23
1.9
23
90
0
70
38
9
6
45
1.63
13637715--13637768
2
27.0
2
92
0
72
51
5
0
42
1.25
13639206--13639230
13
1.9
13
100
0
50
28
0
0
72
0.86
13642126--13642159
15
2.2
16
90
10
54
29
2
0
67
1.05
13643203--13643227
13
1.9
13
100
0
50
48
0
16
36
1.46
13644115--13644182
21
2.9
24
74
14
70
36
4
0
58
1.18
13644330--13644373
23
1.9
23
85
0
61
47
0
0
52
1.00
13653884--13653931
25
1.9
25
83
8
62
45
10
4
39
1.58
13656594--13656642
14
2.9
17
74
20
50
48
2
0
48
1.12
13656594--13656641
17
2.8
18
73
23
50
50
2
0
47
1.12
13658170--13658387
105
2.1
105
89
1
330
33
24
13
27
1.94
13662755--13662823
23
3.2
23
66
26
69
46
5
5
42
1.52
13662769--13662836
23
3.2
22
68
14
54
47
4
5
42
1.48
13667094--13667618
59
8.9
59
80
9
583
33
13
7
45
1.72
13667094--13667618
178
3.0
175
87
6
704
33
13
7
45
1.72
13667094--13667620
119
4.5
117
86
5
665
33
13
7
45
1.72
13667623--13667677
16
3.5
15
78
9
56
76
0
7
16
1.00
13667640--13667694
16
3.5
15
76
9
56
78
0
7
14
0.96
13667635--13667711
35
2.2
35
84
6
95
77
0
6
15
0.95
13667635--13667711
17
4.5
17
77
6
75
77
0
6
15
0.95
13668679--13668711
3
11.3
3
87
6
50
66
3
0
30
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13668675--13668744
20
3.3
21
79
18
74
64
4
0
31
1.13
13668788--13668826
17
2.4
16
86
4
51
69
5
0
25
1.09
13669601--13669649
15
3.1
15
88
5
62
10
0
4
85
0.71
13669612--13669650
17
2.3
17
90
0
60
10
0
2
87
0.65
13669604--13669651
25
2.0
24
95
4
87
10
0
4
85
0.73
13669601--13669651
8
6.4
8
78
17
61
11
0
3
84
0.75
13670560--13670598
21
1.9
21
89
5
62
20
35
28
15
1.93
13670710--13670792
25
3.3
24
77
19
64
34
0
7
57
1.26
13670781--13670860
36
2.2
38
82
8
94
26
3
3
66
1.26
13671774--13671798
10
2.5
10
100
0
50
16
0
0
84
0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147