genome.fa.s445.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  47  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9491191--9491228	17	2.2	18	85	4	51	34	0	0	65	0.93
9491658--9491927	146	1.8	148	82	3	346	46	2	3	46	1.35
9495034--9495073	12	3.3	12	83	13	55	35	0	0	65	0.93
9495035--9495081	24	2.0	24	87	8	69	38	2	0	59	1.09
9500809--9500833	13	1.9	13	100	0	50	48	4	0	48	1.20
9501316--9501346	2	15.5	2	100	0	62	48	0	0	51	1.00
9504743--9504779	12	3.1	12	100	0	74	24	24	8	43	1.81
9506201--9506237	19	1.9	19	88	0	56	13	13	2	70	1.28
9510637--9511008	204	1.8	202	80	9	452	48	5	9	36	1.60
9511565--9511603	18	2.2	18	95	0	69	41	10	17	30	1.83
9511451--9511698	133	1.9	133	95	0	451	36	15	9	37	1.81
9512448--9512487	9	4.4	9	83	0	53	37	2	0	60	1.11
9513728--9513799	29	2.5	27	79	16	74	43	2	1	52	1.24
9514277--9514323	24	2.0	24	83	8	60	29	6	2	61	1.32
9514527--9514566	21	1.9	21	90	10	64	47	0	5	47	1.24
9514527--9514575	21	2.3	22	82	6	57	42	0	12	44	1.41
9515072--9515114	15	2.9	15	79	6	52	53	0	0	46	1.00
9515068--9515119	24	2.2	24	92	0	86	61	0	0	38	0.96
9515121--9515162	14	3.1	14	83	12	52	59	0	0	40	0.97
9515117--9515175	27	2.1	28	81	9	68	59	0	0	40	0.97
9520225--9520301	29	2.5	31	79	12	88	48	5	1	45	1.33
9521412--9521479	31	2.2	31	79	10	77	50	1	0	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9522008--9522049	22	2.0	22	85	4	59	54	2	7	35	1.41
9523379--9523484	52	2.0	52	100	0	212	33	0	9	57	1.31
9523379--9523502	52	2.4	52	93	5	198	35	0	8	56	1.29
9525412--9525465	13	4.1	13	78	2	54	44	0	0	55	0.99
9525503--9525544	18	2.3	19	87	4	59	64	0	2	33	1.07
9525577--9525627	11	4.5	11	78	9	57	45	0	1	52	1.12
9525584--9525632	24	2.0	24	88	0	71	48	0	0	51	1.00
9525577--9525644	35	1.9	35	84	0	91	51	0	1	47	1.09
9526313--9526346	16	2.1	17	88	5	52	32	0	0	67	0.91
9526985--9527012	9	3.1	9	100	0	56	21	32	10	35	1.88
9527174--9527214	2	20.5	2	100	0	82	0	0	48	51	1.00
9530707--9530755	4	13.0	4	75	12	50	24	2	2	71	1.07
9531692--9531762	25	2.8	24	77	16	72	45	5	9	39	1.61
9538329--9538394	31	2.1	33	91	5	109	81	0	6	12	0.85
9538330--9538391	8	7.6	8	85	8	81	85	0	3	11	0.71
9539863--9540142	45	6.3	44	83	7	318	25	10	18	44	1.82
9539862--9540170	134	2.4	132	82	8	364	25	11	20	43	1.85
9540154--9540261	44	2.5	43	83	1	126	22	12	19	45	1.84
9540437--9540488	4	13.8	4	76	11	56	25	1	1	71	1.07
9541428--9541490	25	2.5	25	74	20	69	46	3	11	39	1.55
9541428--9541490	26	2.5	26	78	21	71	46	3	11	39	1.55
9541638--9541698	25	2.4	25	86	2	86	47	6	9	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9543330--9543361	15	2.1	15	94	0	55	21	0	0	78	0.76
9543633--9543672	20	2.0	20	100	0	80	20	20	15	45	1.86
9546197--9546348	59	2.6	57	82	6	173	38	13	6	40	1.71
9546398--9546533	6	21.8	6	67	21	50	74	2	2	20	1.06
9546446--9546522	4	19.2	4	75	12	54	71	2	0	25	0.99
9546376--9546534	8	21.4	7	70	20	53	73	1	2	22	1.05
9546397--9546534	13	10.5	12	67	16	51	74	2	2	20	1.05
9547355--9547457	21	5.0	21	70	17	72	65	0	5	28	1.22
9547366--9547468	21	5.0	20	76	12	84	66	0	5	27	1.21
9547358--9547457	41	2.4	40	83	9	121	65	1	6	28	1.23
9547347--9547578	4	56.5	4	67	18	79	63	2	4	28	1.28
9547438--9547486	18	2.5	19	83	12	64	61	2	2	34	1.19
9547401--9547629	42	5.6	42	74	14	142	63	2	5	28	1.30
9547366--9547578	22	10.0	22	72	13	130	63	2	5	29	1.28
9547602--9547665	7	9.6	7	83	11	73	76	1	1	20	0.95
9547602--9547666	27	2.4	27	87	9	98	76	1	1	20	0.94
9547850--9548104	42	6.1	41	82	6	253	38	19	15	26	1.91
9547896--9548107	83	2.6	83	85	3	268	36	18	16	28	1.92
9549102--9549171	26	2.7	26	82	10	81	10	8	0	81	0.88
9549166--9549204	17	2.2	17	86	9	51	28	15	10	46	1.78
9554733--9554758	2	13.0	2	100	0	52	50	0	0	50	1.00
9559201--9559225	12	2.1	12	100	0	50	28	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9561331--9561382	19	2.7	20	80	20	65	48	0	0	51	1.00
9561339--9561374	17	2.0	18	89	10	56	44	0	0	55	0.99
9561491--9561550	11	5.7	11	81	18	83	58	0	0	41	0.98
9561479--9561550	6	12.3	6	75	16	62	54	0	0	45	0.99
9561470--9561564	36	2.6	36	83	12	115	56	0	0	43	0.99
9567858--9567890	11	2.8	12	86	9	50	18	0	0	81	0.68
9568208--9568277	31	2.3	31	85	5	97	20	24	25	30	1.99
9568326--9568367	19	2.2	19	86	0	57	23	30	23	21	1.99
9568636--9568679	15	2.9	15	86	0	52	9	0	4	86	0.70
9568634--9568662	1	29.0	1	100	0	58	0	0	0	100	0.00
9568712--9569309	156	3.8	156	95	0	1052	29	13	18	38	1.89
9571778--9571815	19	2.1	19	90	5	60	71	0	0	28	0.87
9573154--9573196	18	2.4	18	84	7	52	65	0	4	30	1.13
9575023--9575108	35	2.5	36	74	11	72	29	1	5	63	1.24
9574974--9575078	16	6.6	16	69	18	60	27	0	7	64	1.20
9574966--9575137	83	2.1	76	76	15	168	26	1	6	65	1.26
9576080--9576207	17	7.5	17	70	20	56	20	3	3	71	1.18
9576215--9576749	59	8.9	59	84	4	655	42	7	14	34	1.74
9576217--9576749	180	3.0	178	90	3	813	42	7	15	34	1.74
9576235--9576751	119	4.4	117	89	4	684	42	7	15	34	1.75
9580184--9580213	15	2.1	14	93	6	51	50	6	36	6	1.55
9585102--9585194	8	11.8	8	86	8	129	75	0	11	12	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9585101--9585194	15	5.9	16	81	10	113	75	0	11	12	1.05
9585103--9585194	32	2.9	32	93	3	152	75	0	11	13	1.06
9586211--9586643	39	10.8	39	92	6	692	22	18	20	38	1.93
9586211--9586643	119	3.6	120	92	6	722	22	18	20	38	1.93
9586211--9586643	158	2.7	158	93	5	714	22	18	20	38	1.93
9586655--9586695	17	2.4	17	91	0	64	90	9	0	0	0.46
9586654--9586695	18	2.3	18	91	0	66	90	9	0	0	0.45
9586654--9586695	9	4.7	9	88	8	59	90	9	0	0	0.45
9586652--9586687	1	36.0	1	88	0	54	94	5	0	0	0.31
9586878--9586982	16	6.6	16	69	18	60	27	0	7	64	1.20
9586868--9587033	73	2.3	74	76	14	182	27	1	6	65	1.26
9587010--9587043	17	1.9	18	88	5	52	14	2	2	79	0.97
9586963--9587086	55	2.2	58	81	8	139	26	4	3	66	1.25
9587467--9587528	31	2.0	31	84	6	81	35	14	14	35	1.87
9588002--9588052	26	2.0	25	84	3	66	21	1	5	70	1.18
9588025--9588066	17	2.4	18	88	4	59	14	4	4	76	1.12
9588105--9588521	59	6.9	59	86	5	518	44	6	13	35	1.71
9588124--9588536	180	2.3	178	90	4	663	44	7	14	34	1.72
9590056--9590179	56	2.2	57	87	5	173	30	2	4	62	1.29
9591437--9591566	59	2.2	59	87	5	183	30	2	4	63	1.27
9595998--9596026	14	2.1	14	93	6	51	58	0	0	41	0.98
9596826--9596863	19	2.1	19	90	5	60	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9597748--9597816	31	2.2	31	92	0	111	24	21	27	26	1.99
9598246--9598288	18	2.4	18	84	7	52	65	0	4	30	1.13
9601015--9601145	60	2.2	57	85	5	172	29	2	5	63	1.29
9602387--9602518	58	2.3	59	84	5	180	30	2	4	62	1.27
9606876--9606903	14	2.0	14	100	0	56	64	0	0	35	0.94
9606925--9606968	15	2.9	15	77	9	54	61	0	2	36	1.09
9606925--9606991	30	2.2	30	84	10	82	61	2	2	32	1.26
9607490--9607537	24	1.9	26	83	8	64	43	4	2	50	1.33
9609137--9609200	33	2.0	30	85	8	83	39	0	3	57	1.14
9609309--9609377	34	2.0	35	81	13	81	30	7	0	62	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147